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The map label for this gene is 94314640

Identifier: 94314640

GI number: 94314640

Start: 2478612

End: 2479670

Strand: Reverse

Name: 94314640

Synonym: Rmet_5721

Alternate gene names: NA

Gene position: 2479670-2478612 (Counterclockwise)

Preceding gene: 94314644

Following gene: 94314639

Centisome position: 96.11

GC content: 58.64

Gene sequence:

>1059_bases
ATGAAAATCAAGATGCTCACCGCTGCGGTCGTTGCCTTGGCGTCGACAGGTGCCTTTGCACAATCGAGCGTGACAATGTA
CGGCGTGGCGGACGTCGGTATCGAATATCTGACCCATGCTGGTGGCGACAACAGCACGGTTCGCATGTCGTCAGGCAATC
TCTCAGGATCGCGTTGGGGCCTGCGTGGCACCGAAGATCTGGGTGGCGGCCTGAAAGGCATCTTCACGCTGGAAAGTGGC
ATCAACATCGACACCGGCAGCGGTGCCGACTCGAGCCGCATGTTCAATCGTCAGGCCTTCGTCGGCTTGCAGAAGGATGG
CATCGGCACCCTGACGCTGGGTCGCCAACAGACGCTGCTGTATGACTTCGGTTTGAACTATGATCCGATGGCCATTGCGA
CGCGTTACTCGATCATCGGACAGGACGGTGCGTTTGCAAGCCGTGCCGACAATGCGATCAAGTATGTCGGTACGTTTGGA
GGCGTCACGGCTTCCGCACTGTATAGCTTCCGCTACAACGGCCAAGAAGTCCCTGGCCAGACCAGCCGCGGCGCTGAGTA
CTCGGCCGGCCTGAACTACGCTACTGGCCCGCTGTCGGTTGGCGCTGTGTATGACCAGGTGCGCCTGGGTTTGACGGCAG
GTGTTGCCGACACGGGTGCGAAGATCCAGCGTGCAACGATTGCTGGCACCTATATGTTTGGTCCGGCCAAGGTGTTCGGT
GGCTGGCGTTGGGCAAACCAGACGATGGCCGACAACCACGTACGTTCGAACCTGTGGTGGACGGGCCTGGGCTATCAGGT
GACACCGGCTCTGTCGTTGACCGGCGCGGTTTACTATCAGGCCTTCCACCAGACTTCGGCTGATCCTTGGACGCTGGTGG
CTTCGGCTGACTACGCGTTGTCCAAGCGTACTGATCTCTATCTGAACATGGCCTATGCCATTAACAAGAAGGATAGCGAC
CGGGGCATCGTGTCGGTAGTTGGCGTGAGCAATGCTGATCAGCCAATCAATGGACAGAACCAGTTCGGCGCCGTTGTCGG
CATCCGTCACAAGTTCTGA

Upstream 100 bases:

>100_bases
AGCTGGGCTGATGGCTATTTCTTGTCAATCTCGATCCAAAGATAATTCGCATCGTTGCATGTTCACCTTGTGACGTTAAT
CCACGGAAGAGGAATTCAGT

Downstream 100 bases:

>100_bases
TGACCTGATTGTGTCCTGAAGATCGTGGAGTGCCTGGACGGGTACTCCGCATCTACCAGATCGAAAAGGCCACGGCATAT
GCCGTGGCCTTTTTGCATGG

Product: outer membrane porin

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 352; Mature: 352

Protein sequence:

>352_residues
MKIKMLTAAVVALASTGAFAQSSVTMYGVADVGIEYLTHAGGDNSTVRMSSGNLSGSRWGLRGTEDLGGGLKGIFTLESG
INIDTGSGADSSRMFNRQAFVGLQKDGIGTLTLGRQQTLLYDFGLNYDPMAIATRYSIIGQDGAFASRADNAIKYVGTFG
GVTASALYSFRYNGQEVPGQTSRGAEYSAGLNYATGPLSVGAVYDQVRLGLTAGVADTGAKIQRATIAGTYMFGPAKVFG
GWRWANQTMADNHVRSNLWWTGLGYQVTPALSLTGAVYYQAFHQTSADPWTLVASADYALSKRTDLYLNMAYAINKKDSD
RGIVSVVGVSNADQPINGQNQFGAVVGIRHKF

Sequences:

>Translated_352_residues
MKIKMLTAAVVALASTGAFAQSSVTMYGVADVGIEYLTHAGGDNSTVRMSSGNLSGSRWGLRGTEDLGGGLKGIFTLESG
INIDTGSGADSSRMFNRQAFVGLQKDGIGTLTLGRQQTLLYDFGLNYDPMAIATRYSIIGQDGAFASRADNAIKYVGTFG
GVTASALYSFRYNGQEVPGQTSRGAEYSAGLNYATGPLSVGAVYDQVRLGLTAGVADTGAKIQRATIAGTYMFGPAKVFG
GWRWANQTMADNHVRSNLWWTGLGYQVTPALSLTGAVYYQAFHQTSADPWTLVASADYALSKRTDLYLNMAYAINKKDSD
RGIVSVVGVSNADQPINGQNQFGAVVGIRHKF
>Mature_352_residues
MKIKMLTAAVVALASTGAFAQSSVTMYGVADVGIEYLTHAGGDNSTVRMSSGNLSGSRWGLRGTEDLGGGLKGIFTLESG
INIDTGSGADSSRMFNRQAFVGLQKDGIGTLTLGRQQTLLYDFGLNYDPMAIATRYSIIGQDGAFASRADNAIKYVGTFG
GVTASALYSFRYNGQEVPGQTSRGAEYSAGLNYATGPLSVGAVYDQVRLGLTAGVADTGAKIQRATIAGTYMFGPAKVFG
GWRWANQTMADNHVRSNLWWTGLGYQVTPALSLTGAVYYQAFHQTSADPWTLVASADYALSKRTDLYLNMAYAINKKDSD
RGIVSVVGVSNADQPINGQNQFGAVVGIRHKF

Specific function: Forms anion selective channels [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell outer membrane; Multi-pass membrane protein [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: To bacterial outer membrane proteins and porins [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001702
- InterPro:   IPR002299 [H]

Pfam domain/function: PF00267 Porin_1 [H]

EC number: NA

Molecular weight: Translated: 37317; Mature: 37317

Theoretical pI: Translated: 9.36; Mature: 9.36

Prosite motif: PS00213 LIPOCALIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKIKMLTAAVVALASTGAFAQSSVTMYGVADVGIEYLTHAGGDNSTVRMSSGNLSGSRWG
CEEEHHHHHHHHHHCCCCCCCCCEEEEEEHHHHHHHHHCCCCCCCEEEEECCCCCCCCCC
LRGTEDLGGGLKGIFTLESGINIDTGSGADSSRMFNRQAFVGLQKDGIGTLTLGRQQTLL
CCCCHHHCCCCEEEEEEECCCEEECCCCCCHHHHHCHHHEEEECCCCCEEEEECCCEEEE
YDFGLNYDPMAIATRYSIIGQDGAFASRADNAIKYVGTFGGVTASALYSFRYNGQEVPGQ
EECCCCCCCCEEEEEEEEEECCCCCHHHCCCCEEEEECCCCHHHHHEEEEECCCCCCCCC
TSRGAEYSAGLNYATGPLSVGAVYDQVRLGLTAGVADTGAKIQRATIAGTYMFGPAKVFG
CCCCCCCCCCCCCCCCCEEHHHHHHHHHHCEEECCCCCCCEEEEEEEEEEEEECCHHHHC
GWRWANQTMADNHVRSNLWWTGLGYQVTPALSLTGAVYYQAFHQTSADPWTLVASADYAL
CEEECCCCCCCCCHHCCEEEECCCEEECCCHHHHHHHHHHHHHCCCCCCEEEEEECCCHH
SKRTDLYLNMAYAINKKDSDRGIVSVVGVSNADQPINGQNQFGAVVGIRHKF
CCCCEEEEEEEEEECCCCCCCCEEEEEECCCCCCCCCCCCCCEEEEEEEECC
>Mature Secondary Structure
MKIKMLTAAVVALASTGAFAQSSVTMYGVADVGIEYLTHAGGDNSTVRMSSGNLSGSRWG
CEEEHHHHHHHHHHCCCCCCCCCEEEEEEHHHHHHHHHCCCCCCCEEEEECCCCCCCCCC
LRGTEDLGGGLKGIFTLESGINIDTGSGADSSRMFNRQAFVGLQKDGIGTLTLGRQQTLL
CCCCHHHCCCCEEEEEEECCCEEECCCCCCHHHHHCHHHEEEECCCCCEEEEECCCEEEE
YDFGLNYDPMAIATRYSIIGQDGAFASRADNAIKYVGTFGGVTASALYSFRYNGQEVPGQ
EECCCCCCCCEEEEEEEEEECCCCCHHHCCCCEEEEECCCCHHHHHEEEEECCCCCCCCC
TSRGAEYSAGLNYATGPLSVGAVYDQVRLGLTAGVADTGAKIQRATIAGTYMFGPAKVFG
CCCCCCCCCCCCCCCCCEEHHHHHHHHHHCEEECCCCCCCEEEEEEEEEEEEECCHHHHC
GWRWANQTMADNHVRSNLWWTGLGYQVTPALSLTGAVYYQAFHQTSADPWTLVASADYAL
CEEECCCCCCCCCHHCCEEEECCCEEECCCHHHHHHHHHHHHHCCCCCCEEEEEECCCHH
SKRTDLYLNMAYAINKKDSDRGIVSVVGVSNADQPINGQNQFGAVVGIRHKF
CCCCEEEEEEEEEECCCCCCCCEEEEEECCCCCCCCCCCCCCEEEEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 1658537; 12910271 [H]