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The map label for this gene is yngJ [H]

Identifier: 94314457

GI number: 94314457

Start: 2284233

End: 2285387

Strand: Reverse

Name: yngJ [H]

Synonym: Rmet_5538

Alternate gene names: 94314457

Gene position: 2285387-2284233 (Counterclockwise)

Preceding gene: 94314458

Following gene: 291481583

Centisome position: 88.58

GC content: 58.1

Gene sequence:

>1155_bases
ATGTCGTTGATTAACACCGTCGGGCTGACTGAAGATCAGCGGATGATGCGCGAAGGCGTCCTGGACCTGCTCAACCGGGT
CCTCCCGTGGGAGAAAGTCCGGAAGATGGACGAGGCCCGCGAGTTTCCGCTTGAAGCCTATGAGGCACTGGCAGATGCTG
GTTACATCGGCCTGTTTTATCCCGAGCACCTAGGCGGGATGGGCGGTTCCTACCGCGACATCACTGTCTTGCTCGAGACG
CTTGGCTACTACTACACGGGAATCGCCCAAGCCATTACGACTTCGGCGGTCTATGCCGGTATGCATATCGCGAAGTTTGG
GACGCCCGAGATGCAGCAAGAGCTGATTCCGAAGATCATTTCTGGCAAGGCCAAGCTGGCACTGTGCATGTCCGAGCCTG
GCACGGGCTCCGACGTGGCAGGCCTCAAGACCTACGCCGAACCCGCCGGTGATGAGTACATCCTGAACGGCAATAAGGTC
TGGATCACCTGCGGCCATGTGGCTGACTACTTTGTCGTCATTACGCGAACCGACAGGGAAGGTGGCCGCCATCAAGGAAT
CAGCACGCTGCTGGTTGATGCAAAGGCGCCTGGCGTTACCGTGCGCCCGCTGCAAATGCTGGGGCGTCGTACGACCCATG
CCAATGAGGTCTTCTTCGACAATGTTCGAGTGCCTGCGAAGAACCTGTTCGGTGGCGAAGGCCGTGCCTGGAAAAACATC
ATGAGCTGCCTCGGCCTCGAGCGCCTTGGCTTGGCTGCAATCTCGGCGGGGCACTGCTTCAAGATTACTGAGTATGCCCG
CGACTATGCGAAGGAGCGCGTGCAGTTCGGCAAGCCGATTTCCGATTTCCAGGTCATCCAGCACAAGCTGGCGGACATGC
TCATCCTGTCCGAGACTGCACGTCAGGTAGTCTACCGCGCAGCCGACGTGCTCGACGCCGGCCAGGCTGCAGTTACCGAA
GCATCGATTGCCAAGGTGGTTGCAAGCGAGAACAATTTCAAGTGTGCAGACATCGGGATGCAGATCATGGCAGGTGCTGG
CTACTCGATGGAGTACGACATGCAAATGTTCTTCCGCGACTCCCGCGTTGGTCCTATCGGTGGCGGCACCAACGAGATTC
AGCGCAACATCCTTGCGAAACAAATGGACCTGTAA

Upstream 100 bases:

>100_bases
AGGTAACTTTCTTAACCAGCATCAACCGTGGGCCGGCTAGCTCAGACGCAGCGCTGTGGCCCCGTGCTGTTGCAAAACTC
ATAGTAGTTAGGAGATAACA

Downstream 100 bases:

>100_bases
GTTGAGACTCGGGTAGTTGGGGGCGCGGAAGCGCCCCTTTTTTCTTTGCCCGATGCTCCGGGGTTTCCGTTGCGAGGCGC
TCGAGCCGTTCAAAATGGAA

Product: putative acyl-CoA dehydrogenase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 384; Mature: 383

Protein sequence:

>384_residues
MSLINTVGLTEDQRMMREGVLDLLNRVLPWEKVRKMDEAREFPLEAYEALADAGYIGLFYPEHLGGMGGSYRDITVLLET
LGYYYTGIAQAITTSAVYAGMHIAKFGTPEMQQELIPKIISGKAKLALCMSEPGTGSDVAGLKTYAEPAGDEYILNGNKV
WITCGHVADYFVVITRTDREGGRHQGISTLLVDAKAPGVTVRPLQMLGRRTTHANEVFFDNVRVPAKNLFGGEGRAWKNI
MSCLGLERLGLAAISAGHCFKITEYARDYAKERVQFGKPISDFQVIQHKLADMLILSETARQVVYRAADVLDAGQAAVTE
ASIAKVVASENNFKCADIGMQIMAGAGYSMEYDMQMFFRDSRVGPIGGGTNEIQRNILAKQMDL

Sequences:

>Translated_384_residues
MSLINTVGLTEDQRMMREGVLDLLNRVLPWEKVRKMDEAREFPLEAYEALADAGYIGLFYPEHLGGMGGSYRDITVLLET
LGYYYTGIAQAITTSAVYAGMHIAKFGTPEMQQELIPKIISGKAKLALCMSEPGTGSDVAGLKTYAEPAGDEYILNGNKV
WITCGHVADYFVVITRTDREGGRHQGISTLLVDAKAPGVTVRPLQMLGRRTTHANEVFFDNVRVPAKNLFGGEGRAWKNI
MSCLGLERLGLAAISAGHCFKITEYARDYAKERVQFGKPISDFQVIQHKLADMLILSETARQVVYRAADVLDAGQAAVTE
ASIAKVVASENNFKCADIGMQIMAGAGYSMEYDMQMFFRDSRVGPIGGGTNEIQRNILAKQMDL
>Mature_383_residues
SLINTVGLTEDQRMMREGVLDLLNRVLPWEKVRKMDEAREFPLEAYEALADAGYIGLFYPEHLGGMGGSYRDITVLLETL
GYYYTGIAQAITTSAVYAGMHIAKFGTPEMQQELIPKIISGKAKLALCMSEPGTGSDVAGLKTYAEPAGDEYILNGNKVW
ITCGHVADYFVVITRTDREGGRHQGISTLLVDAKAPGVTVRPLQMLGRRTTHANEVFFDNVRVPAKNLFGGEGRAWKNIM
SCLGLERLGLAAISAGHCFKITEYARDYAKERVQFGKPISDFQVIQHKLADMLILSETARQVVYRAADVLDAGQAAVTEA
SIAKVVASENNFKCADIGMQIMAGAGYSMEYDMQMFFRDSRVGPIGGGTNEIQRNILAKQMDL

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the acyl-CoA dehydrogenase family [H]

Homologues:

Organism=Homo sapiens, GI4501859, Length=377, Percent_Identity=33.1564986737401, Blast_Score=207, Evalue=1e-53,
Organism=Homo sapiens, GI4557233, Length=384, Percent_Identity=32.8125, Blast_Score=200, Evalue=2e-51,
Organism=Homo sapiens, GI226958412, Length=380, Percent_Identity=31.8421052631579, Blast_Score=197, Evalue=2e-50,
Organism=Homo sapiens, GI76496475, Length=386, Percent_Identity=33.419689119171, Blast_Score=191, Evalue=1e-48,
Organism=Homo sapiens, GI4557235, Length=386, Percent_Identity=33.419689119171, Blast_Score=191, Evalue=1e-48,
Organism=Homo sapiens, GI4501857, Length=382, Percent_Identity=32.4607329842932, Blast_Score=188, Evalue=9e-48,
Organism=Homo sapiens, GI4557231, Length=348, Percent_Identity=32.7586206896552, Blast_Score=186, Evalue=3e-47,
Organism=Homo sapiens, GI187960098, Length=348, Percent_Identity=32.7586206896552, Blast_Score=186, Evalue=3e-47,
Organism=Homo sapiens, GI21361497, Length=378, Percent_Identity=33.0687830687831, Blast_Score=185, Evalue=7e-47,
Organism=Homo sapiens, GI226958414, Length=341, Percent_Identity=31.9648093841642, Blast_Score=182, Evalue=4e-46,
Organism=Homo sapiens, GI7656849, Length=379, Percent_Identity=30.8707124010554, Blast_Score=181, Evalue=1e-45,
Organism=Homo sapiens, GI211971008, Length=293, Percent_Identity=27.9863481228669, Blast_Score=114, Evalue=2e-25,
Organism=Homo sapiens, GI48976061, Length=293, Percent_Identity=27.9863481228669, Blast_Score=114, Evalue=2e-25,
Organism=Homo sapiens, GI38505218, Length=284, Percent_Identity=28.5211267605634, Blast_Score=109, Evalue=5e-24,
Organism=Homo sapiens, GI7669494, Length=313, Percent_Identity=28.1150159744409, Blast_Score=101, Evalue=1e-21,
Organism=Homo sapiens, GI4503943, Length=313, Percent_Identity=28.1150159744409, Blast_Score=100, Evalue=2e-21,
Organism=Escherichia coli, GI87081958, Length=377, Percent_Identity=33.42175066313, Blast_Score=183, Evalue=2e-47,
Organism=Escherichia coli, GI1786223, Length=387, Percent_Identity=29.7157622739018, Blast_Score=156, Evalue=3e-39,
Organism=Caenorhabditis elegans, GI17534899, Length=377, Percent_Identity=33.1564986737401, Blast_Score=205, Evalue=3e-53,
Organism=Caenorhabditis elegans, GI17569725, Length=378, Percent_Identity=32.8042328042328, Blast_Score=202, Evalue=2e-52,
Organism=Caenorhabditis elegans, GI17538396, Length=383, Percent_Identity=33.420365535248, Blast_Score=197, Evalue=1e-50,
Organism=Caenorhabditis elegans, GI17570075, Length=378, Percent_Identity=32.8042328042328, Blast_Score=196, Evalue=1e-50,
Organism=Caenorhabditis elegans, GI17508101, Length=362, Percent_Identity=32.3204419889503, Blast_Score=195, Evalue=4e-50,
Organism=Caenorhabditis elegans, GI17506239, Length=376, Percent_Identity=30.5851063829787, Blast_Score=181, Evalue=6e-46,
Organism=Caenorhabditis elegans, GI71985184, Length=386, Percent_Identity=31.3471502590674, Blast_Score=179, Evalue=3e-45,
Organism=Caenorhabditis elegans, GI17505929, Length=351, Percent_Identity=30.7692307692308, Blast_Score=156, Evalue=2e-38,
Organism=Caenorhabditis elegans, GI17533517, Length=378, Percent_Identity=27.5132275132275, Blast_Score=154, Evalue=5e-38,
Organism=Caenorhabditis elegans, GI71985192, Length=333, Percent_Identity=30.9309309309309, Blast_Score=150, Evalue=1e-36,
Organism=Caenorhabditis elegans, GI17551932, Length=357, Percent_Identity=29.1316526610644, Blast_Score=149, Evalue=2e-36,
Organism=Caenorhabditis elegans, GI71990804, Length=298, Percent_Identity=29.8657718120805, Blast_Score=140, Evalue=1e-33,
Organism=Caenorhabditis elegans, GI32563615, Length=232, Percent_Identity=31.4655172413793, Blast_Score=121, Evalue=7e-28,
Organism=Caenorhabditis elegans, GI17534353, Length=376, Percent_Identity=25.2659574468085, Blast_Score=108, Evalue=5e-24,
Organism=Caenorhabditis elegans, GI71982178, Length=277, Percent_Identity=27.7978339350181, Blast_Score=102, Evalue=3e-22,
Organism=Caenorhabditis elegans, GI17562446, Length=287, Percent_Identity=25.7839721254355, Blast_Score=87, Evalue=1e-17,
Organism=Caenorhabditis elegans, GI86563381, Length=309, Percent_Identity=26.2135922330097, Blast_Score=77, Evalue=1e-14,
Organism=Caenorhabditis elegans, GI86563383, Length=309, Percent_Identity=26.2135922330097, Blast_Score=77, Evalue=1e-14,
Organism=Drosophila melanogaster, GI21355753, Length=381, Percent_Identity=34.6456692913386, Blast_Score=209, Evalue=3e-54,
Organism=Drosophila melanogaster, GI24666513, Length=374, Percent_Identity=32.620320855615, Blast_Score=192, Evalue=4e-49,
Organism=Drosophila melanogaster, GI21356377, Length=374, Percent_Identity=32.0855614973262, Blast_Score=191, Evalue=1e-48,
Organism=Drosophila melanogaster, GI24660351, Length=384, Percent_Identity=32.2916666666667, Blast_Score=185, Evalue=4e-47,
Organism=Drosophila melanogaster, GI24646207, Length=372, Percent_Identity=30.6451612903226, Blast_Score=185, Evalue=6e-47,
Organism=Drosophila melanogaster, GI281363737, Length=380, Percent_Identity=28.9473684210526, Blast_Score=174, Evalue=9e-44,
Organism=Drosophila melanogaster, GI19920834, Length=270, Percent_Identity=31.8518518518519, Blast_Score=107, Evalue=1e-23,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006089
- InterPro:   IPR006092
- InterPro:   IPR006090
- InterPro:   IPR006091
- InterPro:   IPR009075
- InterPro:   IPR013786
- InterPro:   IPR009100 [H]

Pfam domain/function: PF00441 Acyl-CoA_dh_1; PF02770 Acyl-CoA_dh_M; PF02771 Acyl-CoA_dh_N [H]

EC number: NA

Molecular weight: Translated: 42175; Mature: 42044

Theoretical pI: Translated: 6.18; Mature: 6.18

Prosite motif: PS00318 HMG_COA_REDUCTASE_2 ; PS00134 TRYPSIN_HIS

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
4.4 %Met     (Translated Protein)
5.7 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
4.2 %Met     (Mature Protein)
5.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSLINTVGLTEDQRMMREGVLDLLNRVLPWEKVRKMDEAREFPLEAYEALADAGYIGLFY
CCCCCCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCHHHHHHHHCCCEEEEEC
PEHLGGMGGSYRDITVLLETLGYYYTGIAQAITTSAVYAGMHIAKFGTPEMQQELIPKII
HHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHCCCHHHHHHHHHHHH
SGKAKLALCMSEPGTGSDVAGLKTYAEPAGDEYILNGNKVWITCGHVADYFVVITRTDRE
CCCCEEEEEECCCCCCCCCHHHHHHCCCCCCCEEECCCEEEEEECCCCCEEEEEEECCCC
GGRHQGISTLLVDAKAPGVTVRPLQMLGRRTTHANEVFFDNVRVPAKNLFGGEGRAWKNI
CCCCCCCEEEEEECCCCCCEEHHHHHHCCCCCCCCCEEECCCCCCHHHCCCCCCHHHHHH
MSCLGLERLGLAAISAGHCFKITEYARDYAKERVQFGKPISDFQVIQHKLADMLILSETA
HHHHCHHHHHHHHCCCCCCEEHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH
RQVVYRAADVLDAGQAAVTEASIAKVVASENNFKCADIGMQIMAGAGYSMEYDMQMFFRD
HHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCCHHHHCHHHHHCCCCCEEHHHHHHHHC
SRVGPIGGGTNEIQRNILAKQMDL
CCCCCCCCCHHHHHHHHHHHHCCC
>Mature Secondary Structure 
SLINTVGLTEDQRMMREGVLDLLNRVLPWEKVRKMDEAREFPLEAYEALADAGYIGLFY
CCCCCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCHHHHHHHHCCCEEEEEC
PEHLGGMGGSYRDITVLLETLGYYYTGIAQAITTSAVYAGMHIAKFGTPEMQQELIPKII
HHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHCCCHHHHHHHHHHHH
SGKAKLALCMSEPGTGSDVAGLKTYAEPAGDEYILNGNKVWITCGHVADYFVVITRTDRE
CCCCEEEEEECCCCCCCCCHHHHHHCCCCCCCEEECCCEEEEEECCCCCEEEEEEECCCC
GGRHQGISTLLVDAKAPGVTVRPLQMLGRRTTHANEVFFDNVRVPAKNLFGGEGRAWKNI
CCCCCCCEEEEEECCCCCCEEHHHHHHCCCCCCCCCEEECCCCCCHHHCCCCCCHHHHHH
MSCLGLERLGLAAISAGHCFKITEYARDYAKERVQFGKPISDFQVIQHKLADMLILSETA
HHHHCHHHHHHHHCCCCCCEEHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH
RQVVYRAADVLDAGQAAVTEASIAKVVASENNFKCADIGMQIMAGAGYSMEYDMQMFFRD
HHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCCHHHHCHHHHHCCCCCEEHHHHHHHHC
SRVGPIGGGTNEIQRNILAKQMDL
CCCCCCCCCHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9387222; 9384377 [H]