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The map label for this gene is 94314423

Identifier: 94314423

GI number: 94314423

Start: 2247347

End: 2248486

Strand: Reverse

Name: 94314423

Synonym: Rmet_5504

Alternate gene names: NA

Gene position: 2248486-2247347 (Counterclockwise)

Preceding gene: 94314425

Following gene: 94314409

Centisome position: 87.15

GC content: 56.32

Gene sequence:

>1140_bases
ATGCAAAAAATCGGAGGAGACAAGGTGAAAAGAGCGTTGCTTGCGTCGACGGCGCTGGGGCTGTTGCTGTGTACTGGCTA
TGCCCACTCAAGTGTGACGTTGTATGGCGTGGTCGATTCGAACATCGAGTACGTGAATAAGTTGACGAATGCCAGTGGCG
CATCAGGCAGCGTCGTCCGGAATAGTGGCGGCGGCTTCGCCAGCAACCGTTGGGGCGTGCGCGGGGTGGAGGATCTCGGC
GGTGGGCTGAAGGGAATTTTCACCGTTGAAGGCGGCTTCAACGTGGATACCGGCACGCAGTTCAACGCAAACAAGCTGTA
CGATCGACAGACGTTTGTTGGAGTGAGCAGCGATGAGTACGGTCAACTGACGTTCGGGCGGCAATACAGCACCATCTTCC
GCGCTCTGGCCAACTTTTCGCCTAGTGCGTATGCGCCGATGTATGAGCCGTTGTCGTTTCTTTTGGGTATGAATCTGAGA
AACGACAACAGTGTTAACTATGTCATCCAGCGAGGCAGCATCGGAGCACGATTACACTGGACTTTTGGGAATGGTGTGTT
CGGTGCAGGCGAGACTCCGGGGGAGATTAGGGCGAATGCTGGCTATGGCGCTTCGCTCGAGTACTCAGCAGGTGAGTTTG
GCGCATCGATTGCGTACGATCAGTTCTATCCGACGCTCACAACGCTGGGTGATAACGGAATTGGTAACTTCCGAAAGGCA
GCGATCGGCGCGGGCTACAACCTCGGAAAGTTCCGATTCTCCGGCGGCTATCGGTGGGGGCGCAACGAGTTCTCGAATGG
TAGCGTGGCGCTGCGCGACGACTTCCTCTGGTTTGGCGTCAATTATCAGGTCGCGCCGAAGGTCAATCTGATGCTTGCTT
ATTACTACGACAAGCTGCACACGCTCAGGGCGCAGTACAACGGCGCAGAGCTTGACCGACCCAATCCTTACCAAGTCAGC
TTCATGGCGAGCTATGACTTCTCGAAACGGACTAACGTCTATTTGACTACGGCCTACTCTAAGAACGTCGCGCTCGCCTT
TGGCGGACTGGCGACTACGGCTGCGAGCGGGGCGTACTTGCTCGGTGCCGGCAAGAGCAGCCAGGTTGGTGCGGCATTGG
GCATCCGGCATATCTTCTGA

Upstream 100 bases:

>100_bases
GGTTCAACCAATCATATTTAATCACTGCGAGGCGGACAAGGCGCAGAGATCGGAAATCTGCACCTGAGCGCTTCCTAGCG
AGGCGGTGACCTTGCGAGAC

Downstream 100 bases:

>100_bases
GCACCTACACGCATTCATGCTTTTGGCGCCCTTGCGGCGCCTTTTTTTGTTCGTTTGGAATGGAGTGGGCTTCTGCGGGT
CACGTAGATGCGCATCACGG

Product: outer membrane porin

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 379; Mature: 379

Protein sequence:

>379_residues
MQKIGGDKVKRALLASTALGLLLCTGYAHSSVTLYGVVDSNIEYVNKLTNASGASGSVVRNSGGGFASNRWGVRGVEDLG
GGLKGIFTVEGGFNVDTGTQFNANKLYDRQTFVGVSSDEYGQLTFGRQYSTIFRALANFSPSAYAPMYEPLSFLLGMNLR
NDNSVNYVIQRGSIGARLHWTFGNGVFGAGETPGEIRANAGYGASLEYSAGEFGASIAYDQFYPTLTTLGDNGIGNFRKA
AIGAGYNLGKFRFSGGYRWGRNEFSNGSVALRDDFLWFGVNYQVAPKVNLMLAYYYDKLHTLRAQYNGAELDRPNPYQVS
FMASYDFSKRTNVYLTTAYSKNVALAFGGLATTAASGAYLLGAGKSSQVGAALGIRHIF

Sequences:

>Translated_379_residues
MQKIGGDKVKRALLASTALGLLLCTGYAHSSVTLYGVVDSNIEYVNKLTNASGASGSVVRNSGGGFASNRWGVRGVEDLG
GGLKGIFTVEGGFNVDTGTQFNANKLYDRQTFVGVSSDEYGQLTFGRQYSTIFRALANFSPSAYAPMYEPLSFLLGMNLR
NDNSVNYVIQRGSIGARLHWTFGNGVFGAGETPGEIRANAGYGASLEYSAGEFGASIAYDQFYPTLTTLGDNGIGNFRKA
AIGAGYNLGKFRFSGGYRWGRNEFSNGSVALRDDFLWFGVNYQVAPKVNLMLAYYYDKLHTLRAQYNGAELDRPNPYQVS
FMASYDFSKRTNVYLTTAYSKNVALAFGGLATTAASGAYLLGAGKSSQVGAALGIRHIF
>Mature_379_residues
MQKIGGDKVKRALLASTALGLLLCTGYAHSSVTLYGVVDSNIEYVNKLTNASGASGSVVRNSGGGFASNRWGVRGVEDLG
GGLKGIFTVEGGFNVDTGTQFNANKLYDRQTFVGVSSDEYGQLTFGRQYSTIFRALANFSPSAYAPMYEPLSFLLGMNLR
NDNSVNYVIQRGSIGARLHWTFGNGVFGAGETPGEIRANAGYGASLEYSAGEFGASIAYDQFYPTLTTLGDNGIGNFRKA
AIGAGYNLGKFRFSGGYRWGRNEFSNGSVALRDDFLWFGVNYQVAPKVNLMLAYYYDKLHTLRAQYNGAELDRPNPYQVS
FMASYDFSKRTNVYLTTAYSKNVALAFGGLATTAASGAYLLGAGKSSQVGAALGIRHIF

Specific function: Forms anion selective channels [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell outer membrane; Multi-pass membrane protein [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: To bacterial outer membrane proteins and porins [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001702
- InterPro:   IPR002299 [H]

Pfam domain/function: PF00267 Porin_1 [H]

EC number: NA

Molecular weight: Translated: 40739; Mature: 40739

Theoretical pI: Translated: 9.55; Mature: 9.55

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
1.6 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
1.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQKIGGDKVKRALLASTALGLLLCTGYAHSSVTLYGVVDSNIEYVNKLTNASGASGSVVR
CCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEECCCHHHHHHHCCCCCCCCCEEE
NSGGGFASNRWGVRGVEDLGGGLKGIFTVEGGFNVDTGTQFNANKLYDRQTFVGVSSDEY
ECCCCCCCCCCCCCCHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCCCCEEEEECCCCCC
GQLTFGRQYSTIFRALANFSPSAYAPMYEPLSFLLGMNLRNDNSVNYVIQRGSIGARLHW
CCEEECCHHHHHHHHHHCCCCCCCCCHHHHHHHHHCCCCCCCCCEEEEEEECCCCEEEEE
TFGNGVFGAGETPGEIRANAGYGASLEYSAGEFGASIAYDQFYPTLTTLGDNGIGNFRKA
EECCEEECCCCCCCCEEECCCCCCEEECCCCCCCCEEEHHHHCCCCEECCCCCCCCHHHH
AIGAGYNLGKFRFSGGYRWGRNEFSNGSVALRDDFLWFGVNYQVAPKVNLMLAYYYDKLH
HHCCCCCCCEEEECCCEECCCCCCCCCCEEEEECEEEEECCEEECCCEEEEEEEEHHHHH
TLRAQYNGAELDRPNPYQVSFMASYDFSKRTNVYLTTAYSKNVALAFGGLATTAASGAYL
HHHHHCCCCCCCCCCCEEEEEEEECCCCCCCCEEEEEEECCCEEEEECCHHHHHCCCEEE
LGAGKSSQVGAALGIRHIF
EECCCCCCCCHHHHHEECC
>Mature Secondary Structure
MQKIGGDKVKRALLASTALGLLLCTGYAHSSVTLYGVVDSNIEYVNKLTNASGASGSVVR
CCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEECCCHHHHHHHCCCCCCCCCEEE
NSGGGFASNRWGVRGVEDLGGGLKGIFTVEGGFNVDTGTQFNANKLYDRQTFVGVSSDEY
ECCCCCCCCCCCCCCHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCCCCEEEEECCCCCC
GQLTFGRQYSTIFRALANFSPSAYAPMYEPLSFLLGMNLRNDNSVNYVIQRGSIGARLHW
CCEEECCHHHHHHHHHHCCCCCCCCCHHHHHHHHHCCCCCCCCCEEEEEEECCCCEEEEE
TFGNGVFGAGETPGEIRANAGYGASLEYSAGEFGASIAYDQFYPTLTTLGDNGIGNFRKA
EECCEEECCCCCCCCEEECCCCCCEEECCCCCCCCEEEHHHHCCCCEECCCCCCCCHHHH
AIGAGYNLGKFRFSGGYRWGRNEFSNGSVALRDDFLWFGVNYQVAPKVNLMLAYYYDKLH
HHCCCCCCCEEEECCCEECCCCCCCCCCEEEEECEEEEECCEEECCCEEEEEEEEHHHHH
TLRAQYNGAELDRPNPYQVSFMASYDFSKRTNVYLTTAYSKNVALAFGGLATTAASGAYL
HHHHHCCCCCCCCCCCEEEEEEEECCCCCCCCEEEEEEECCCEEEEECCHHHHHCCCEEE
LGAGKSSQVGAALGIRHIF
EECCCCCCCCHHHHHEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 1658537; 12910271 [H]