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The map label for this gene is yfdE [H]

Identifier: 94314354

GI number: 94314354

Start: 2181342

End: 2182454

Strand: Reverse

Name: yfdE [H]

Synonym: Rmet_5435

Alternate gene names: 94314354

Gene position: 2182454-2181342 (Counterclockwise)

Preceding gene: 94314355

Following gene: 94314353

Centisome position: 84.59

GC content: 68.28

Gene sequence:

>1113_bases
ATGGCAGGTTCGCTGGAAGGTTTGAATGTTGTCGAGTTCGCCGGGTTGGGGCCCGCGCCGTTCTGCTGCATGTTGCTGGC
GGATCACGGTGCCGATGTGCTCCGGATCACGCGCCCCACGGCGCCGGGCGTCGAGGCAAAGGTGAATCCTGCGGATGTGC
TGGCACGCGGCCGGCGCACGATACCGCTGGACCTGCGTGAGGCTTCCGGAAGAGATGCCGCGCTGGAACTGATCGCCCGC
GCGGATGTTGTGGTGGAAGGCTTCCGGCCCGGCGTCATGGAACGGCTCGGGCTGGGGCCGGATGTCTGCCTCGCGCGCAA
TCCTCGGCTTGTCTACGGGCGCATGACCGGCTGGGGCCAGTACGGTCCCCTGGCGCAGGCCGCCGGCCACGATATCAACT
ACATCGCCATCAGCGGCGCGCTGCACGCGATTGGCCGGGCCGGCGAAGCGCCGGTGCCGCCATTGAACCTGGTTGGCGAT
TTCGGAGGTGGCGGCATGATGCTCGCGTTCGGCCTGATGGCTGCACTGTACGAGGCGCGCCAGTCCGGACGCGGTCAGGT
CATCGATGCCGCGATGACGGATGGATCGGCGCTGCTTTCCGCCATGCAGTACGGCATGAAGGCCGGCGGCCGCTGGAACA
ACCAGCGCGGCGAGAATCTGCTCGACGGCGGCGCGCCGTTCTACGACACGTATGCCTGCGCCGATGGCAAGTATGTTGCG
GTTGGTGCGATCGAGCCGCAGTTCTACGCGGCGCTGCGCGAGCGTTGCGGCATCGAAGACCCTCTGTTCGACGGCCAGAT
GGAAACCGCGCGCTGGCCGCTGCTCAAGCTGCGGCTGGCGGACATCTTCCGTACCCGGACGCGCGCCGAGTGGTGCGCGC
TCCTGGAGGGTTCCGATGCGTGCTTCGCCCCGGTGCTGGATTGGGACGAGGCGCCTGAGCACCCGCACAACCGCGAACGC
GAGGCCTTCGTCACCTTGCAGGGCGTGGTTCAGCCTGCCGCGGCGCCGCGTTTCTCGCGCACCCCTGCGGCCGCGCCGCA
ATCCGAACGAAGAGTTTCCCTCGATGCCGCGCTAGCGCATTGGGGCGCGCTGCAGCCGGCGAGCGCAGGCTGA

Upstream 100 bases:

>100_bases
CATGGATTTCGTCGCTTCCGACGATTCGTTGCCCCCTTGTTTGACGCACCATAACGGCGTTGACCGTGATGTGAGCGCCG
CTGGCGCGATAGGGGCTGGT

Downstream 100 bases:

>100_bases
GCAACACGTTTTTGCAGACTGGTGGGGGCAACACCAGTCCTAACTTGATTCAAGGAGTCACTATCGTGAGCAATCCCATG
CGAACCCGCGTCACGCGTTT

Product: alpha-methylacyl-CoA racemase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 370; Mature: 369

Protein sequence:

>370_residues
MAGSLEGLNVVEFAGLGPAPFCCMLLADHGADVLRITRPTAPGVEAKVNPADVLARGRRTIPLDLREASGRDAALELIAR
ADVVVEGFRPGVMERLGLGPDVCLARNPRLVYGRMTGWGQYGPLAQAAGHDINYIAISGALHAIGRAGEAPVPPLNLVGD
FGGGGMMLAFGLMAALYEARQSGRGQVIDAAMTDGSALLSAMQYGMKAGGRWNNQRGENLLDGGAPFYDTYACADGKYVA
VGAIEPQFYAALRERCGIEDPLFDGQMETARWPLLKLRLADIFRTRTRAEWCALLEGSDACFAPVLDWDEAPEHPHNRER
EAFVTLQGVVQPAAAPRFSRTPAAAPQSERRVSLDAALAHWGALQPASAG

Sequences:

>Translated_370_residues
MAGSLEGLNVVEFAGLGPAPFCCMLLADHGADVLRITRPTAPGVEAKVNPADVLARGRRTIPLDLREASGRDAALELIAR
ADVVVEGFRPGVMERLGLGPDVCLARNPRLVYGRMTGWGQYGPLAQAAGHDINYIAISGALHAIGRAGEAPVPPLNLVGD
FGGGGMMLAFGLMAALYEARQSGRGQVIDAAMTDGSALLSAMQYGMKAGGRWNNQRGENLLDGGAPFYDTYACADGKYVA
VGAIEPQFYAALRERCGIEDPLFDGQMETARWPLLKLRLADIFRTRTRAEWCALLEGSDACFAPVLDWDEAPEHPHNRER
EAFVTLQGVVQPAAAPRFSRTPAAAPQSERRVSLDAALAHWGALQPASAG
>Mature_369_residues
AGSLEGLNVVEFAGLGPAPFCCMLLADHGADVLRITRPTAPGVEAKVNPADVLARGRRTIPLDLREASGRDAALELIARA
DVVVEGFRPGVMERLGLGPDVCLARNPRLVYGRMTGWGQYGPLAQAAGHDINYIAISGALHAIGRAGEAPVPPLNLVGDF
GGGGMMLAFGLMAALYEARQSGRGQVIDAAMTDGSALLSAMQYGMKAGGRWNNQRGENLLDGGAPFYDTYACADGKYVAV
GAIEPQFYAALRERCGIEDPLFDGQMETARWPLLKLRLADIFRTRTRAEWCALLEGSDACFAPVLDWDEAPEHPHNRERE
AFVTLQGVVQPAAAPRFSRTPAAAPQSERRVSLDAALAHWGALQPASAG

Specific function: Unknown

COG id: COG1804

COG function: function code C; Predicted acyl-CoA transferases/carnitine dehydratase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the CaiB/BaiF CoA-transferase family [H]

Homologues:

Organism=Homo sapiens, GI266456254, Length=341, Percent_Identity=47.8005865102639, Blast_Score=334, Evalue=8e-92,
Organism=Homo sapiens, GI42794625, Length=341, Percent_Identity=47.8005865102639, Blast_Score=334, Evalue=9e-92,
Organism=Homo sapiens, GI266458397, Length=253, Percent_Identity=50.5928853754941, Blast_Score=259, Evalue=3e-69,
Organism=Homo sapiens, GI266458393, Length=249, Percent_Identity=51.004016064257, Blast_Score=258, Evalue=8e-69,
Organism=Homo sapiens, GI42822893, Length=157, Percent_Identity=43.9490445859873, Blast_Score=133, Evalue=3e-31,
Organism=Homo sapiens, GI266458395, Length=141, Percent_Identity=47.5177304964539, Blast_Score=133, Evalue=3e-31,
Organism=Homo sapiens, GI300863124, Length=334, Percent_Identity=27.2455089820359, Blast_Score=124, Evalue=1e-28,
Organism=Homo sapiens, GI300863128, Length=363, Percent_Identity=27.2727272727273, Blast_Score=123, Evalue=3e-28,
Organism=Homo sapiens, GI300863126, Length=357, Percent_Identity=23.8095238095238, Blast_Score=92, Evalue=7e-19,
Organism=Homo sapiens, GI13376042, Length=334, Percent_Identity=23.3532934131737, Blast_Score=89, Evalue=6e-18,
Organism=Escherichia coli, GI87082093, Length=352, Percent_Identity=27.8409090909091, Blast_Score=129, Evalue=4e-31,
Organism=Escherichia coli, GI1788717, Length=205, Percent_Identity=30.7317073170732, Blast_Score=91, Evalue=8e-20,
Organism=Escherichia coli, GI1786222, Length=364, Percent_Identity=27.7472527472527, Blast_Score=84, Evalue=2e-17,
Organism=Caenorhabditis elegans, GI115535051, Length=328, Percent_Identity=37.1951219512195, Blast_Score=212, Evalue=2e-55,
Organism=Caenorhabditis elegans, GI32564160, Length=350, Percent_Identity=33.7142857142857, Blast_Score=204, Evalue=4e-53,
Organism=Drosophila melanogaster, GI24585488, Length=359, Percent_Identity=44.5682451253482, Blast_Score=309, Evalue=2e-84,
Organism=Drosophila melanogaster, GI24648431, Length=339, Percent_Identity=28.6135693215339, Blast_Score=108, Evalue=7e-24,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003673 [H]

Pfam domain/function: PF02515 CoA_transf_3 [H]

EC number: NA

Molecular weight: Translated: 39389; Mature: 39258

Theoretical pI: Translated: 5.45; Mature: 5.45

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.9 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
4.9 %Cys+Met (Translated Protein)
1.9 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
4.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAGSLEGLNVVEFAGLGPAPFCCMLLADHGADVLRITRPTAPGVEAKVNPADVLARGRRT
CCCCCCCCCEEEECCCCCHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCHHHHHHCCCCC
IPLDLREASGRDAALELIARADVVVEGFRPGVMERLGLGPDVCLARNPRLVYGRMTGWGQ
CEEEHHCCCCCHHHHHHHHHHHHHEECCCCHHHHHHCCCCCEEEECCCEEEEEECCCCCC
YGPLAQAAGHDINYIAISGALHAIGRAGEAPVPPLNLVGDFGGGGMMLAFGLMAALYEAR
CCCHHHHCCCCCEEEEECHHHHHHCCCCCCCCCCHHEEECCCCCHHHHHHHHHHHHHHHH
QSGRGQVIDAAMTDGSALLSAMQYGMKAGGRWNNQRGENLLDGGAPFYDTYACADGKYVA
HCCCCEEEEEECCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEECCCCEEE
VGAIEPQFYAALRERCGIEDPLFDGQMETARWPLLKLRLADIFRTRTRAEWCALLEGSDA
EECCCHHHHHHHHHHCCCCCCCCCCCCCHHHCHHHHHHHHHHHHHHHHHHHHHEECCCCC
CFAPVLDWDEAPEHPHNREREAFVTLQGVVQPAAAPRFSRTPAAAPQSERRVSLDAALAH
CEECCCCCCCCCCCCCCCCHHHEEEEHHHHCCCCCCCCCCCCCCCCCCCCEEHHHHHHHH
WGALQPASAG
HCCCCCCCCC
>Mature Secondary Structure 
AGSLEGLNVVEFAGLGPAPFCCMLLADHGADVLRITRPTAPGVEAKVNPADVLARGRRT
CCCCCCCCEEEECCCCCHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCHHHHHHCCCCC
IPLDLREASGRDAALELIARADVVVEGFRPGVMERLGLGPDVCLARNPRLVYGRMTGWGQ
CEEEHHCCCCCHHHHHHHHHHHHHEECCCCHHHHHHCCCCCEEEECCCEEEEEECCCCCC
YGPLAQAAGHDINYIAISGALHAIGRAGEAPVPPLNLVGDFGGGGMMLAFGLMAALYEAR
CCCHHHHCCCCCEEEEECHHHHHHCCCCCCCCCCHHEEECCCCCHHHHHHHHHHHHHHHH
QSGRGQVIDAAMTDGSALLSAMQYGMKAGGRWNNQRGENLLDGGAPFYDTYACADGKYVA
HCCCCEEEEEECCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEECCCCEEE
VGAIEPQFYAALRERCGIEDPLFDGQMETARWPLLKLRLADIFRTRTRAEWCALLEGSDA
EECCCHHHHHHHHHHCCCCCCCCCCCCCHHHCHHHHHHHHHHHHHHHHHHHHHEECCCCC
CFAPVLDWDEAPEHPHNREREAFVTLQGVVQPAAAPRFSRTPAAAPQSERRVSLDAALAH
CEECCCCCCCCCCCCCCCCHHHEEEEHHHHCCCCCCCCCCCCCCCCCCCCEEHHHHHHHH
WGALQPASAG
HCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9205837; 9278503; 8125343 [H]