Click here to switch to the map view.

The map label for this gene is rpoM [C]

Identifier: 94314319

GI number: 94314319

Start: 2128951

End: 2129448

Strand: Direct

Name: rpoM [C]

Synonym: Rmet_5400

Alternate gene names: 94314319

Gene position: 2128951-2129448 (Clockwise)

Preceding gene: 94314318

Following gene: 94314320

Centisome position: 82.51

GC content: 64.86

Gene sequence:

>498_bases
ATGATTCCGGCGTTGCGCCGCTATGCCCGCGCGCTATTGCGCGAGCAGGCGGCCGCGGACGATCTCGTGCAGGACTGCCT
GGAAAAGGTCATCACGTACTGGGACAGCCGCCGCAACCGCGCAGACACCCGTAGTTGGGTATTCGCCATCCTGCATAACC
TTGCGATGACGGCCCTGCGCCGTCATGCAAGCGCGCAAGGGTTGCACGTGGCGATCGACGACGTGGCGGAGTCCCTCATG
ACCGTGCCGCCGGCCCAGGAAGACGCACTGCGTTATCGGGACCTGCTGAGCGCGGTCGATGCCCTTCCCGCCGAACAGCG
CAGTGTGCTCCTGCTGGTCTCGGTGGAGGAGATGTCGTACGCCGAGACCGCACGCATTCTTGAGATTCCCGTCGGCACCG
TGATGTCGCGCCTGTCTCGCGCGCGGGAAAAACTACTGAGGCAGATGGAACCCGGCCTGAAGGCGGCCCCGACATCCGGA
CTGCGGAGGGTCAAATGA

Upstream 100 bases:

>100_bases
ACCCGTTCAGGTGCAGGCGCTCTAGCCCGCGTGCGATCATGCTGCCACCCCTGACGGAGACACCGCTGCCGTGAAGGACT
TGCTGCAACAGGTCGAACCG

Downstream 100 bases:

>100_bases
ACGAGCATCGACCGATACAGGAAGAGGAACTGCTGGCCTACGTCGACCACGCGCTCGACACCACGCGCCTGCGCGAGATC
GAGGCGTACCTGCAGCAGCA

Product: RNA polymerase sigma M factor (ECF:FecI-like)

Products: NA

Alternate protein names: ECF Subfamily RNA Polymerase Sigma-24 Factor; RNA Polymerase Sigma Factor; Sigma-; RNA Polymerase Sigma Factor Sigma-70 Family; ECF Subfamily RNA Polymerase Sigma Factor; ECF Subfamily RNA Polymerase Sigma-24 Subunit; RNA Polymerase Sigma-70 Factor ECF Subfamily; RNA Polymerase Sigma Factor Protein; ECF Sigma Factor; ECF Family Sigma Factor; ECF Sigma Factor PrtI; Extracytoplasmic Sigma Factor EcfR; RNA Polymerase Sigma-70 Factor ECF Subfamily Protein; RNA Polymerase Sigma-70 Factor ECF Family Protein; RNA Polymerase Sigma-70 Factor; ECF Family RNA Polymerase Sigma Factor; RNA Polymerase Sigma-E Factor Protein; RNA Polymerase Sigma Factor RpoE; RNA Polymerase Sigma M Factor; FecI-Like Sigma-; RNA Polymerase Sigma-24 Factor; RNA Polymerase ECF-Type Sigma Factor; RNA Polymerase Sigma-E Factor; DNA-Directed RNA Polymerase Sigma Subunit; Extracytoplasmic Sigma Factor Protein; RNA Polymerase Sigma-24 Subunit Ecf Subfamily; RNA Polymerase ECF Sigma Factor; DNA-Directed RNA Polymerase Sigma Subunit PrtI

Number of amino acids: Translated: 165; Mature: 165

Protein sequence:

>165_residues
MIPALRRYARALLREQAAADDLVQDCLEKVITYWDSRRNRADTRSWVFAILHNLAMTALRRHASAQGLHVAIDDVAESLM
TVPPAQEDALRYRDLLSAVDALPAEQRSVLLLVSVEEMSYAETARILEIPVGTVMSRLSRAREKLLRQMEPGLKAAPTSG
LRRVK

Sequences:

>Translated_165_residues
MIPALRRYARALLREQAAADDLVQDCLEKVITYWDSRRNRADTRSWVFAILHNLAMTALRRHASAQGLHVAIDDVAESLM
TVPPAQEDALRYRDLLSAVDALPAEQRSVLLLVSVEEMSYAETARILEIPVGTVMSRLSRAREKLLRQMEPGLKAAPTSG
LRRVK
>Mature_165_residues
MIPALRRYARALLREQAAADDLVQDCLEKVITYWDSRRNRADTRSWVFAILHNLAMTALRRHASAQGLHVAIDDVAESLM
TVPPAQEDALRYRDLLSAVDALPAEQRSVLLLVSVEEMSYAETARILEIPVGTVMSRLSRAREKLLRQMEPGLKAAPTSG
LRRVK

Specific function: Sigma Factors Are Initiation Factors That Promote The Attachment Of RNA Polymerase To Specific Initiation Sites And Are Then Released. This Sigma Factor Is Involved In Heat Shock And Oxidative Stress Response; It Is Believed To Control Protein Processing

COG id: COG1595

COG function: function code K; DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: <10 [C]

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 18547; Mature: 18547

Theoretical pI: Translated: 9.58; Mature: 9.58

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
3.6 %Met     (Translated Protein)
4.2 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
3.6 %Met     (Mature Protein)
4.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIPALRRYARALLREQAAADDLVQDCLEKVITYWDSRRNRADTRSWVFAILHNLAMTALR
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH
RHASAQGLHVAIDDVAESLMTVPPAQEDALRYRDLLSAVDALPAEQRSVLLLVSVEEMSY
HHHCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCCCCEEEEEEHHHHHH
AETARILEIPVGTVMSRLSRAREKLLRQMEPGLKAAPTSGLRRVK
HHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCC
>Mature Secondary Structure
MIPALRRYARALLREQAAADDLVQDCLEKVITYWDSRRNRADTRSWVFAILHNLAMTALR
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH
RHASAQGLHVAIDDVAESLMTVPPAQEDALRYRDLLSAVDALPAEQRSVLLLVSVEEMSY
HHHCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCCCCEEEEEEHHHHHH
AETARILEIPVGTVMSRLSRAREKLLRQMEPGLKAAPTSGLRRVK
HHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA