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The map label for this gene is nahR [H]

Identifier: 94314279

GI number: 94314279

Start: 2081384

End: 2082379

Strand: Reverse

Name: nahR [H]

Synonym: Rmet_5360

Alternate gene names: 94314279

Gene position: 2082379-2081384 (Counterclockwise)

Preceding gene: 94314282

Following gene: 94314275

Centisome position: 80.71

GC content: 65.96

Gene sequence:

>996_bases
ATGAACGAATCTCGTTTCAGCGACACCCCAGGCTCGGACGGCACGGAGACGCCGGAAGGCCGCGACAGCAGACGACCGGC
GCTTGCCGAACTGCGCAAGAAGGATCTGAACCTGCTGGTGGTGCTGGCCGCCATGCTCGAGAGCAACAGCGTCAGCGAGG
CCGCCAGGCGGCTGGACAGCACCCAGCCCTCGATGAGCCGGATGCTCGACCGGCTGCGCGACGATCTCGGCGATCCACTG
CTGATCAAGAGCGCCCACAAGATGCTGCCGACGCGCCGCGCCCAGGACATCCGCCGCGTGCTCGATGACGTGTTGCGTGC
CATCGAAGGCGTCTACCAGCAGGGCAGCGACTACAACCCGGCGATGGAGACCGGCACGTACGTGATCGGTATCAACGATT
CCCTGCAGGCGTTGATTGCCCCGGCGTTCCTGGCCAGCCTGCGCCAGGTGGCGCCGCGCGCGCGGGTCCGGATGCAGCCC
GTGCCACAGCAGGGCGGCATTTCCGCGATGACCAGCGGGGCGATCGACCTGATGGTGGCGTTCTATCCCGTGGATATGGA
ATCGCTGCGCTCCGAGCTGCTGCTGACGACGCGTTTCGGCTGCCTGTCGGCCAGATCCAACCCGCATATCGGCGCGATCA
CCTCGGCGCGCGAACTGGCATCGCTCGACTGTCTCGACATCTCGCAGTTCGGCCTGATCACGCGGCTGCTCGACCGCTAC
TTCCAATCGCATGGCCTGCATCGGCGGATCGTCGGCACACTGACCAGCTACCTGGCCGTAGCCGACGCGATTCACGACAC
CGAGATCTACGCGATGATTCCGGACTACCTCGCCAGGCCGCTGTGCCGGCATCCCGGCATGCGCTTCTCGCCGATGGAGG
ACGAAGGCATGGCCGTGCCGATTCATCTGTGCTGGCACAACAACGTCCACTCGCACCCGTTCGTCACGGTGCTGCGGTCG
CTGCTGGCATCCGCCGCGCGTCACGTGGCCACCTAG

Upstream 100 bases:

>100_bases
GATGGGCTCGGTTCTGTGGATAGGTTTCCCCGCCGGGCGGGGTTGAAATGCTGCATACTGCGTTATGCCTTATTCAATAT
GAATTTGAAGCGCAATAGCG

Downstream 100 bases:

>100_bases
GCAGTCGTCAGGTTCACGCATCGCTCACGCATCATTTACGCATCCGCTCGCCAATCACTCGGGCTTGATGCCGGCTGCCG
CGGCAACCTTGCGGAACCGG

Product: putative LysR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 331; Mature: 331

Protein sequence:

>331_residues
MNESRFSDTPGSDGTETPEGRDSRRPALAELRKKDLNLLVVLAAMLESNSVSEAARRLDSTQPSMSRMLDRLRDDLGDPL
LIKSAHKMLPTRRAQDIRRVLDDVLRAIEGVYQQGSDYNPAMETGTYVIGINDSLQALIAPAFLASLRQVAPRARVRMQP
VPQQGGISAMTSGAIDLMVAFYPVDMESLRSELLLTTRFGCLSARSNPHIGAITSARELASLDCLDISQFGLITRLLDRY
FQSHGLHRRIVGTLTSYLAVADAIHDTEIYAMIPDYLARPLCRHPGMRFSPMEDEGMAVPIHLCWHNNVHSHPFVTVLRS
LLASAARHVAT

Sequences:

>Translated_331_residues
MNESRFSDTPGSDGTETPEGRDSRRPALAELRKKDLNLLVVLAAMLESNSVSEAARRLDSTQPSMSRMLDRLRDDLGDPL
LIKSAHKMLPTRRAQDIRRVLDDVLRAIEGVYQQGSDYNPAMETGTYVIGINDSLQALIAPAFLASLRQVAPRARVRMQP
VPQQGGISAMTSGAIDLMVAFYPVDMESLRSELLLTTRFGCLSARSNPHIGAITSARELASLDCLDISQFGLITRLLDRY
FQSHGLHRRIVGTLTSYLAVADAIHDTEIYAMIPDYLARPLCRHPGMRFSPMEDEGMAVPIHLCWHNNVHSHPFVTVLRS
LLASAARHVAT
>Mature_331_residues
MNESRFSDTPGSDGTETPEGRDSRRPALAELRKKDLNLLVVLAAMLESNSVSEAARRLDSTQPSMSRMLDRLRDDLGDPL
LIKSAHKMLPTRRAQDIRRVLDDVLRAIEGVYQQGSDYNPAMETGTYVIGINDSLQALIAPAFLASLRQVAPRARVRMQP
VPQQGGISAMTSGAIDLMVAFYPVDMESLRSELLLTTRFGCLSARSNPHIGAITSARELASLDCLDISQFGLITRLLDRY
FQSHGLHRRIVGTLTSYLAVADAIHDTEIYAMIPDYLARPLCRHPGMRFSPMEDEGMAVPIHLCWHNNVHSHPFVTVLRS
LLASAARHVAT

Specific function: Regulates the expression of the naphthalene (nahA-F) and salicylate (nahG-M) metabolism genes [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI87081684, Length=296, Percent_Identity=18.9189189189189, Blast_Score=64, Evalue=2e-11,

Paralogues:

None

Copy number: 825 Molecules/Cell In: Growth Phase, Glucose-minimal MOPS Media. [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 36642; Mature: 36642

Theoretical pI: Translated: 7.36; Mature: 7.36

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
4.2 %Met     (Translated Protein)
5.4 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
4.2 %Met     (Mature Protein)
5.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNESRFSDTPGSDGTETPEGRDSRRPALAELRKKDLNLLVVLAAMLESNSVSEAARRLDS
CCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCHHHHHHHHHHHCCCHHHHHHHHCC
TQPSMSRMLDRLRDDLGDPLLIKSAHKMLPTRRAQDIRRVLDDVLRAIEGVYQQGSDYNP
CCHHHHHHHHHHHHHCCCCEEHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
AMETGTYVIGINDSLQALIAPAFLASLRQVAPRARVRMQPVPQQGGISAMTSGAIDLMVA
HHHCCCEEEECCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHH
FYPVDMESLRSELLLTTRFGCLSARSNPHIGAITSARELASLDCLDISQFGLITRLLDRY
HCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHH
FQSHGLHRRIVGTLTSYLAVADAIHDTEIYAMIPDYLARPLCRHPGMRFSPMEDEGMAVP
HHHCCCHHHHHHHHHHHHHHHHHHHCCHHHHCCHHHHHHHHHHCCCCCCCCCCCCCCEEE
IHLCWHNNVHSHPFVTVLRSLLASAARHVAT
EEEEECCCCCCCHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MNESRFSDTPGSDGTETPEGRDSRRPALAELRKKDLNLLVVLAAMLESNSVSEAARRLDS
CCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCHHHHHHHHHHHCCCHHHHHHHHCC
TQPSMSRMLDRLRDDLGDPLLIKSAHKMLPTRRAQDIRRVLDDVLRAIEGVYQQGSDYNP
CCHHHHHHHHHHHHHCCCCEEHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
AMETGTYVIGINDSLQALIAPAFLASLRQVAPRARVRMQPVPQQGGISAMTSGAIDLMVA
HHHCCCEEEECCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHH
FYPVDMESLRSELLLTTRFGCLSARSNPHIGAITSARELASLDCLDISQFGLITRLLDRY
HCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHH
FQSHGLHRRIVGTLTSYLAVADAIHDTEIYAMIPDYLARPLCRHPGMRFSPMEDEGMAVP
HHHCCCHHHHHHHHHHHHHHHHHHHCCHHHHCCHHHHHHHHHHCCCCCCCCCCCCCCEEE
IHLCWHNNVHSHPFVTVLRSLLASAARHVAT
EEEEECCCCCCCHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 2703465; 2848005 [H]