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The map label for this gene is fliR [H]

Identifier: 94314222

GI number: 94314222

Start: 2004330

End: 2005115

Strand: Direct

Name: fliR [H]

Synonym: Rmet_5303

Alternate gene names: 94314222

Gene position: 2004330-2005115 (Clockwise)

Preceding gene: 94314221

Following gene: 94314223

Centisome position: 77.68

GC content: 64.89

Gene sequence:

>786_bases
GTGATCGAGGTCACCACCGCCCAGATGTACGGCTGGATCGCCACCTTCCTGTGGCCGATGTTCCGGATGCTGGGGCTGAT
CTCTTCCGCGCCGCTGCTCAGCGAATCGACGATTCCCCGGCGTCTCAAGATCCTGCTGGCAGCCGCTCTTTCGATAATCA
TCTCCCCTACGATCGGCAATATCCCCACCGTGCCGGTCTACTCGCTCGATGGCCTGCTGATCGTCCTCAACGAAGTCGGC
ATCGGCTTGTCGATGGGCTTCGCAATGCGCCTGGTATTCGCCGCGGTGCAGATGGCAGGTGAAGTCATCGGCCTGCAGAT
GGGTCTGTCGTTCGCGTCGTTCTACGATCGCGCGGCCGGCGGCCAGACCATGGTGCTGTCACGCTTCCTGAACATGGTGG
CCATGCTGCTGTTCCTGGCGCTCGACGGTCATCTGATGATGCTGGCCGCGCTGATCGACAGCTTCCAGGGCCTGCCCATC
TCCGGCGTGCCGCTCTCCGGGCACGGCTGGGGCGTGCTGGCTCGCGCGGGATCGATGATCTTCTCCGCCGGTACGCTGCT
CTCGCTGCCGATGATCGCGGCGCTGCTGACGATGAACCTGGCCATGGGCATCCTGAACCGGGCCTCGCCGCAGCTTTCAA
TCTTCGCCGTGGGCTTCCCCGTCACGCTGCTGGGCGGCATGCTGGTCCTGGCGCTGGTGATGCCGCACATGGGCGCCTAC
GTGCAGCACCTGATCGAAAGCGGCCTCCAGACCGCCGCCACCGTGCTCGACCAGCTCGCGCCCTAG

Upstream 100 bases:

>100_bases
CTTCGTGGACTACATGCGCCAGGTGTTCCAGAGCATCCCCGCCCTGGCCCACTGATCCGGCCGCCGTACCCTTTTCCCTT
TTCCTTCCCAATAGCCCGCC

Downstream 100 bases:

>100_bases
CGATCAGACAGAGACCCGGGCCGTCGCTCAGGACAGCGCGCCCACCTGCTTGAGCACCGCGCGCGCAATCTCCTGGCGCT
TCGGCGCGACGCCCGGGTTC

Product: flagellar biosynthetic protein FliR

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 261; Mature: 261

Protein sequence:

>261_residues
MIEVTTAQMYGWIATFLWPMFRMLGLISSAPLLSESTIPRRLKILLAAALSIIISPTIGNIPTVPVYSLDGLLIVLNEVG
IGLSMGFAMRLVFAAVQMAGEVIGLQMGLSFASFYDRAAGGQTMVLSRFLNMVAMLLFLALDGHLMMLAALIDSFQGLPI
SGVPLSGHGWGVLARAGSMIFSAGTLLSLPMIAALLTMNLAMGILNRASPQLSIFAVGFPVTLLGGMLVLALVMPHMGAY
VQHLIESGLQTAATVLDQLAP

Sequences:

>Translated_261_residues
MIEVTTAQMYGWIATFLWPMFRMLGLISSAPLLSESTIPRRLKILLAAALSIIISPTIGNIPTVPVYSLDGLLIVLNEVG
IGLSMGFAMRLVFAAVQMAGEVIGLQMGLSFASFYDRAAGGQTMVLSRFLNMVAMLLFLALDGHLMMLAALIDSFQGLPI
SGVPLSGHGWGVLARAGSMIFSAGTLLSLPMIAALLTMNLAMGILNRASPQLSIFAVGFPVTLLGGMLVLALVMPHMGAY
VQHLIESGLQTAATVLDQLAP
>Mature_261_residues
MIEVTTAQMYGWIATFLWPMFRMLGLISSAPLLSESTIPRRLKILLAAALSIIISPTIGNIPTVPVYSLDGLLIVLNEVG
IGLSMGFAMRLVFAAVQMAGEVIGLQMGLSFASFYDRAAGGQTMVLSRFLNMVAMLLFLALDGHLMMLAALIDSFQGLPI
SGVPLSGHGWGVLARAGSMIFSAGTLLSLPMIAALLTMNLAMGILNRASPQLSIFAVGFPVTLLGGMLVLALVMPHMGAY
VQHLIESGLQTAATVLDQLAP

Specific function: Role in flagellar biosynthesis [H]

COG id: COG1684

COG function: function code NU; Flagellar biosynthesis pathway, component FliR

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential). Bacterial flagellum basal body [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the fliR/mopE/spaR family [H]

Homologues:

Organism=Escherichia coli, GI1788261, Length=260, Percent_Identity=44.6153846153846, Blast_Score=199, Evalue=2e-52,

Paralogues:

None

Copy number: 10-20 (rich media) [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006303
- InterPro:   IPR002010 [H]

Pfam domain/function: PF01311 Bac_export_1 [H]

EC number: NA

Molecular weight: Translated: 27577; Mature: 27577

Theoretical pI: Translated: 6.97; Mature: 6.97

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
7.7 %Met     (Translated Protein)
7.7 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
7.7 %Met     (Mature Protein)
7.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIEVTTAQMYGWIATFLWPMFRMLGLISSAPLLSESTIPRRLKILLAAALSIIISPTIGN
CCEEEHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCC
IPTVPVYSLDGLLIVLNEVGIGLSMGFAMRLVFAAVQMAGEVIGLQMGLSFASFYDRAAG
CCCCCEEECCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
GQTMVLSRFLNMVAMLLFLALDGHLMMLAALIDSFQGLPISGVPLSGHGWGVLARAGSMI
CHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHH
FSAGTLLSLPMIAALLTMNLAMGILNRASPQLSIFAVGFPVTLLGGMLVLALVMPHMGAY
HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECHHHHHHHHHHHHHHHHHHHHHH
VQHLIESGLQTAATVLDQLAP
HHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MIEVTTAQMYGWIATFLWPMFRMLGLISSAPLLSESTIPRRLKILLAAALSIIISPTIGN
CCEEEHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCC
IPTVPVYSLDGLLIVLNEVGIGLSMGFAMRLVFAAVQMAGEVIGLQMGLSFASFYDRAAG
CCCCCEEECCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
GQTMVLSRFLNMVAMLLFLALDGHLMMLAALIDSFQGLPISGVPLSGHGWGVLARAGSMI
CHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHH
FSAGTLLSLPMIAALLTMNLAMGILNRASPQLSIFAVGFPVTLLGGMLVLALVMPHMGAY
HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECHHHHHHHHHHHHHHHHHHHHHH
VQHLIESGLQTAATVLDQLAP
HHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 8412685; 7934865 [H]