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The map label for this gene is yfdE [H]

Identifier: 94314168

GI number: 94314168

Start: 1947642

End: 1948754

Strand: Direct

Name: yfdE [H]

Synonym: Rmet_5249

Alternate gene names: 94314168

Gene position: 1947642-1948754 (Clockwise)

Preceding gene: 94314167

Following gene: 94314170

Centisome position: 75.49

GC content: 65.59

Gene sequence:

>1113_bases
ATGACCACCGAAAACCTCTCGTTCTCCCCCCTTGCCGGCGTCCGCGTACTGGATTTCTCGCATGTCATCGCGGGCCCGTT
GGCAACGTTCTACCTGTCACAGCTCGGGGCCGATGTGCTGAAGATGGAAAACGCCAATGGCGGCGATGTCATGCGCAGGA
CCGAAACTGGCCGAAAGGGCTTTCTCGCGCTCAATGCGGGCAAGGACTGTCGTGACATTGACCTGGGCTCCGAAGCGGGC
CGCGCCGACGCTCTCGCCCTGGCGGCCACGTGCGATGTCGTCGTCGACAACCTGCGCCCCGGCGTGCTGGAGCGATTCGG
CCTCGGCTTCGAAGCGGTGCGGGCGGTGAATCCGCGTGTGGTGTATTGCTCGATTTCGGGCTTTGGTCGCGGCAGTGCCG
ACTGGTCGGGCCGCCCCGCATACGACCATGTCATTCAGGCGGCCACAGGCATGACCTTTCTGGCGGGCAACGAGAACGAC
CCGCCGATCAAGACCGGATTCCCTGTCGTCGACGCCGCAACGGGCATGCAGGCAGCGCTCTCCATTCTGGCCGGCCTGCG
CGAGCGCGATCGCTGCGGCTGCGCCATTCAGCTCGACATCTCCATGACCGGCGCAGCGATGCAACTCATGTATGGCTTTG
CCTGCGAGGCATTGACGGATGGCACTTCGCCCTCTCGCGTGGGCAACCGGGGCTACTCGGGGAGCCCGACGGCGGACTTC
TTCCCCACGACCGACGGCTGGATTGCACTCGGCGCCAACACCCCACGCCAGTTGCTGCGCCTTCTCGAAGTCCTGGAACT
GTCCGAGCTTGCCGCCGACCCGGCCTACTTTGCCGAACCACTGGATGCGGAGTCCCCCGCCACCTTCGTGCGCTCACGCG
ACCCTGCCGCGCTGAAAACGATCATCGCGCAACGCCTGCAAATGCTGCGCGCCGACGAACTCGAGGAACGCCTCGCCACG
CGCGGGGTACCCGCAGCGAAGGTACGCAAGCTGGGCGAGTTTGCCGAAGCGGCGCTAGGTCACGGCCGCATATCGACTGT
CACACTGCGCGATGGCGACACCGAAGTCATGTCGCCGGGCCTGGGCTTCGGTGCCCGGCGACATCCGGGCTAA

Upstream 100 bases:

>100_bases
CACCGAGCCAGGAAGCCTTTGACCGATTCGTTGCCGACGAGATGGTCAAGTACCGCCGGATCATCGAATCGAACCATATT
TCGCTGCAATGAGGCCACCC

Downstream 100 bases:

>100_bases
TCCGGGCTAATCCGGGCTAATCCGGGCTAATCCGCACTAATGCTGGCCTCCTCGCACCGGCGCGCGCTCAGAACGTTTCC
CAATCGCCGCCATCGGCCGT

Product: putative L-carnitine dehydratase/bile acid-inducible protein F

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 370; Mature: 369

Protein sequence:

>370_residues
MTTENLSFSPLAGVRVLDFSHVIAGPLATFYLSQLGADVLKMENANGGDVMRRTETGRKGFLALNAGKDCRDIDLGSEAG
RADALALAATCDVVVDNLRPGVLERFGLGFEAVRAVNPRVVYCSISGFGRGSADWSGRPAYDHVIQAATGMTFLAGNEND
PPIKTGFPVVDAATGMQAALSILAGLRERDRCGCAIQLDISMTGAAMQLMYGFACEALTDGTSPSRVGNRGYSGSPTADF
FPTTDGWIALGANTPRQLLRLLEVLELSELAADPAYFAEPLDAESPATFVRSRDPAALKTIIAQRLQMLRADELEERLAT
RGVPAAKVRKLGEFAEAALGHGRISTVTLRDGDTEVMSPGLGFGARRHPG

Sequences:

>Translated_370_residues
MTTENLSFSPLAGVRVLDFSHVIAGPLATFYLSQLGADVLKMENANGGDVMRRTETGRKGFLALNAGKDCRDIDLGSEAG
RADALALAATCDVVVDNLRPGVLERFGLGFEAVRAVNPRVVYCSISGFGRGSADWSGRPAYDHVIQAATGMTFLAGNEND
PPIKTGFPVVDAATGMQAALSILAGLRERDRCGCAIQLDISMTGAAMQLMYGFACEALTDGTSPSRVGNRGYSGSPTADF
FPTTDGWIALGANTPRQLLRLLEVLELSELAADPAYFAEPLDAESPATFVRSRDPAALKTIIAQRLQMLRADELEERLAT
RGVPAAKVRKLGEFAEAALGHGRISTVTLRDGDTEVMSPGLGFGARRHPG
>Mature_369_residues
TTENLSFSPLAGVRVLDFSHVIAGPLATFYLSQLGADVLKMENANGGDVMRRTETGRKGFLALNAGKDCRDIDLGSEAGR
ADALALAATCDVVVDNLRPGVLERFGLGFEAVRAVNPRVVYCSISGFGRGSADWSGRPAYDHVIQAATGMTFLAGNENDP
PIKTGFPVVDAATGMQAALSILAGLRERDRCGCAIQLDISMTGAAMQLMYGFACEALTDGTSPSRVGNRGYSGSPTADFF
PTTDGWIALGANTPRQLLRLLEVLELSELAADPAYFAEPLDAESPATFVRSRDPAALKTIIAQRLQMLRADELEERLATR
GVPAAKVRKLGEFAEAALGHGRISTVTLRDGDTEVMSPGLGFGARRHPG

Specific function: Unknown

COG id: COG1804

COG function: function code C; Predicted acyl-CoA transferases/carnitine dehydratase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the CaiB/BaiF CoA-transferase family [H]

Homologues:

Organism=Homo sapiens, GI300863128, Length=341, Percent_Identity=29.9120234604106, Blast_Score=159, Evalue=5e-39,
Organism=Homo sapiens, GI300863124, Length=336, Percent_Identity=30.0595238095238, Blast_Score=157, Evalue=1e-38,
Organism=Homo sapiens, GI300863126, Length=341, Percent_Identity=26.3929618768328, Blast_Score=116, Evalue=4e-26,
Organism=Homo sapiens, GI13376042, Length=336, Percent_Identity=25.297619047619, Blast_Score=110, Evalue=3e-24,
Organism=Homo sapiens, GI42794625, Length=255, Percent_Identity=28.6274509803922, Blast_Score=74, Evalue=3e-13,
Organism=Homo sapiens, GI266456254, Length=255, Percent_Identity=28.6274509803922, Blast_Score=73, Evalue=3e-13,
Organism=Homo sapiens, GI266458397, Length=249, Percent_Identity=28.1124497991968, Blast_Score=73, Evalue=4e-13,
Organism=Homo sapiens, GI266458393, Length=249, Percent_Identity=28.1124497991968, Blast_Score=73, Evalue=4e-13,
Organism=Escherichia coli, GI87082093, Length=335, Percent_Identity=29.8507462686567, Blast_Score=157, Evalue=1e-39,
Organism=Escherichia coli, GI1788717, Length=206, Percent_Identity=32.0388349514563, Blast_Score=107, Evalue=8e-25,
Organism=Escherichia coli, GI1786222, Length=339, Percent_Identity=24.4837758112094, Blast_Score=80, Evalue=2e-16,
Organism=Caenorhabditis elegans, GI32564160, Length=289, Percent_Identity=25.6055363321799, Blast_Score=68, Evalue=7e-12,
Organism=Drosophila melanogaster, GI24648431, Length=276, Percent_Identity=34.4202898550725, Blast_Score=159, Evalue=4e-39,
Organism=Drosophila melanogaster, GI24585488, Length=275, Percent_Identity=29.8181818181818, Blast_Score=88, Evalue=8e-18,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003673 [H]

Pfam domain/function: PF02515 CoA_transf_3 [H]

EC number: NA

Molecular weight: Translated: 39210; Mature: 39079

Theoretical pI: Translated: 5.12; Mature: 5.12

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
4.3 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
4.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTTENLSFSPLAGVRVLDFSHVIAGPLATFYLSQLGADVLKMENANGGDVMRRTETGRKG
CCCCCCCCCCCCCEEEECHHHHHHHHHHHHHHHHHCHHHEEECCCCCCCHHHHCCCCCCC
FLALNAGKDCRDIDLGSEAGRADALALAATCDVVVDNLRPGVLERFGLGFEAVRAVNPRV
EEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHCCCHHHHHHCCCEE
VYCSISGFGRGSADWSGRPAYDHVIQAATGMTFLAGNENDPPIKTGFPVVDAATGMQAAL
EEEEECCCCCCCCCCCCCCHHHHHHHHHCCCEEEECCCCCCCCCCCCCHHHHHHHHHHHH
SILAGLRERDRCGCAIQLDISMTGAAMQLMYGFACEALTDGTSPSRVGNRGYSGSPTADF
HHHHHHHHHCCCCEEEEEEEECCHHHHHHHHHHHHHHHCCCCCCHHCCCCCCCCCCCCCC
FPTTDGWIALGANTPRQLLRLLEVLELSELAADPAYFAEPLDAESPATFVRSRDPAALKT
CCCCCCEEEECCCCHHHHHHHHHHHHHHHHHCCHHHHCCCCCCCCCHHHHHCCCHHHHHH
IIAQRLQMLRADELEERLATRGVPAAKVRKLGEFAEAALGHGRISTVTLRDGDTEVMSPG
HHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCEEEEEEECCCHHHCCCC
LGFGARRHPG
CCCCCCCCCC
>Mature Secondary Structure 
TTENLSFSPLAGVRVLDFSHVIAGPLATFYLSQLGADVLKMENANGGDVMRRTETGRKG
CCCCCCCCCCCCEEEECHHHHHHHHHHHHHHHHHCHHHEEECCCCCCCHHHHCCCCCCC
FLALNAGKDCRDIDLGSEAGRADALALAATCDVVVDNLRPGVLERFGLGFEAVRAVNPRV
EEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHCCCHHHHHHCCCEE
VYCSISGFGRGSADWSGRPAYDHVIQAATGMTFLAGNENDPPIKTGFPVVDAATGMQAAL
EEEEECCCCCCCCCCCCCCHHHHHHHHHCCCEEEECCCCCCCCCCCCCHHHHHHHHHHHH
SILAGLRERDRCGCAIQLDISMTGAAMQLMYGFACEALTDGTSPSRVGNRGYSGSPTADF
HHHHHHHHHCCCCEEEEEEEECCHHHHHHHHHHHHHHHCCCCCCHHCCCCCCCCCCCCCC
FPTTDGWIALGANTPRQLLRLLEVLELSELAADPAYFAEPLDAESPATFVRSRDPAALKT
CCCCCCEEEECCCCHHHHHHHHHHHHHHHHHCCHHHHCCCCCCCCCHHHHHCCCHHHHHH
IIAQRLQMLRADELEERLATRGVPAAKVRKLGEFAEAALGHGRISTVTLRDGDTEVMSPG
HHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCEEEEEEECCCHHHCCCC
LGFGARRHPG
CCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9205837; 9278503; 8125343 [H]