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The map label for this gene is 94314116

Identifier: 94314116

GI number: 94314116

Start: 1892888

End: 1893304

Strand: Direct

Name: 94314116

Synonym: Rmet_5197

Alternate gene names: NA

Gene position: 1892888-1893304 (Clockwise)

Preceding gene: 94314115

Following gene: 94314118

Centisome position: 73.37

GC content: 64.03

Gene sequence:

>417_bases
ATGTCGGCCCGCCATGCCTTGCGTGGGCCGGCGGGCCGGTCTTTCAGGCGACACGATGAATTGATGAAGTCGAAGATGAA
GTCGAAGAAAGCGTTTGTTTTTGCGGTGTTCTCCACTTGGGCGGCCGTGCTCGGCCTGTTGAATCCGGCCGCGCACGCCG
CCCCTTCTTCCAGTGAGGAAACCTGCCGCGCGTGTCACGCGCTCGATACGGTCAAGGTTGGGCCGCCATTCCGTGCGATT
GCCTCGCGCTATCACGACGATGCCGACGCCGTCGACAAGCTGAAGCAGAGCCTGCTCCAGGGTAGCAGCGGGAAATGGGG
CACGGCGCAGATGCCGCCCAATCCCATCACGCCCGCCGAAGCCACACGCTTCGCGCACTGGATCCTGCAGCTTGCGGCAC
CGGGCCAGCGCAACTAG

Upstream 100 bases:

>100_bases
TCTGGGCCTTTACCGAAGACGGCGCCTACGCACTGTCGACGCCGTTGCTCGGCGAACCCGTGCTCGGCGCGCCGGCAAAG
CCCTGGCCGCGACGCTAAGC

Downstream 100 bases:

>100_bases
TGGCAGCCGACGCGCCGGCTGCCACATGCGCGCCGGCGGCGTCGCGCTCAGCCTGCCAGATCGACCGGATGGGCCGGCGC
AGCGTGACGGAACCATCCGT

Product: putative cytochrome c (class I)

Products: NA

Alternate protein names: Cytochrome c552 [H]

Number of amino acids: Translated: 138; Mature: 137

Protein sequence:

>138_residues
MSARHALRGPAGRSFRRHDELMKSKMKSKKAFVFAVFSTWAAVLGLLNPAAHAAPSSSEETCRACHALDTVKVGPPFRAI
ASRYHDDADAVDKLKQSLLQGSSGKWGTAQMPPNPITPAEATRFAHWILQLAAPGQRN

Sequences:

>Translated_138_residues
MSARHALRGPAGRSFRRHDELMKSKMKSKKAFVFAVFSTWAAVLGLLNPAAHAAPSSSEETCRACHALDTVKVGPPFRAI
ASRYHDDADAVDKLKQSLLQGSSGKWGTAQMPPNPITPAEATRFAHWILQLAAPGQRN
>Mature_137_residues
SARHALRGPAGRSFRRHDELMKSKMKSKKAFVFAVFSTWAAVLGLLNPAAHAAPSSSEETCRACHALDTVKVGPPFRAIA
SRYHDDADAVDKLKQSLLQGSSGKWGTAQMPPNPITPAEATRFAHWILQLAAPGQRN

Specific function: Reacts with hydrogenase [H]

COG id: COG4654

COG function: function code C; Cytochrome c551/c552

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the cytochrome c family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009056
- InterPro:   IPR003088
- InterPro:   IPR002324 [H]

Pfam domain/function: PF00034 Cytochrom_C [H]

EC number: NA

Molecular weight: Translated: 14975; Mature: 14844

Theoretical pI: Translated: 10.88; Mature: 10.88

Prosite motif: PS51007 CYTC

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
4.3 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSARHALRGPAGRSFRRHDELMKSKMKSKKAFVFAVFSTWAAVLGLLNPAAHAAPSSSEE
CCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHCCCCCCHH
TCRACHALDTVKVGPPFRAIASRYHDDADAVDKLKQSLLQGSSGKWGTAQMPPNPITPAE
HHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHH
ATRFAHWILQLAAPGQRN
HHHHHHHHHHHCCCCCCC
>Mature Secondary Structure 
SARHALRGPAGRSFRRHDELMKSKMKSKKAFVFAVFSTWAAVLGLLNPAAHAAPSSSEE
CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHCCCCCCHH
TCRACHALDTVKVGPPFRAIASRYHDDADAVDKLKQSLLQGSSGKWGTAQMPPNPITPAE
HHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHH
ATRFAHWILQLAAPGQRN
HHHHHHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 1645652; 2536668; 2558725; 9657676 [H]