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The map label for this gene is dan [H]

Identifier: 94314012

GI number: 94314012

Start: 1783091

End: 1784575

Strand: Direct

Name: dan [H]

Synonym: Rmet_5093

Alternate gene names: 94314012

Gene position: 1783091-1784575 (Clockwise)

Preceding gene: 94314011

Following gene: 94314013

Centisome position: 69.11

GC content: 67.41

Gene sequence:

>1485_bases
ATGCCACTCCAGGAGACCCGTAGCATGGCTGAGCAGGCTTCGAACCATCATGATCTGCTGATCCGGGGCGGCACCGTGAT
CGACGGTAGCAAGGCACCGCGATTCACCGCCGACATTGCCGTGCGCGATGGCCGCATCGCCGCTATCGGCGACCTTGCTG
GTCACACTGCCGAGCGCACGCTGGACGCCGCCGGCCGCATCGTCGCCCCGGGCTTTATCGACTCGCATACCCACGACGAC
CAGGCGGTGCTGTCGCAGGCGGCAATGCCGTTCAAGATCTCCCAGGGCGTGACCACGGTGGTGGCCGGCAACTGCGGCAT
CAGCGCTGCACCGCTACGCGCCGACATGGACCTGCCGATGCCGCTGGGCCTGATCGATGCACCGCCTGAAGGCCGCTTCA
CAACCTTCGCCGCCTATCTGGACGCCCTGCGCGCCACCCCCAGCTCGGTGAACGTGGCAGCGATGGTGGGGCACTCCACG
CTGCGCGCGGTCACCATGTCCGCGCTGGATCGCCCCGCGAACGACGACGAGATCGCAGCCATGCAGGCGCTGGTCGAGGA
AGCGATGCAGGCGGGTGCCATCGGGCTGTCGACCGGTACCTTCTACCCGCCGGCGATCAAGGCCACCACCGAGGAGATCA
TCGAAGTCTGCCGCCCGCTGAGCGCGCGCAAGGCGCTCTATGTCACGCACATGCGCAACGAGTCCGATCAGGTCATGGAA
GCGCTCGAGGAGACCTTCCAGATCGGCCGCGCGCTGGAAGTACCCGTGGTGGTGTCGCACCACAAGGTGCAGAACACGCC
AAACTTCGGCCGCAGCCGCGTCACCCTGCCCTTTATCCAGGAGACGATGCAGCACCAGTGCGTGTCGCTCGACTGCTATC
CCTACACCGCCGGCTCCACCATGATCCGCACCGAACCCGCCATGCTCGAGGGTCGCGTGCGCATCGCCTCCAGCGTGCCG
CACCCAGAATGCACGGGCCGCGACCTGGATGACATCGCCCGCGAATGGGGCGTCGCCAAGCAGGAAGCCGCGCGGCGGCT
GCAGCCCGGCACGGCCATCTACTTCCTGATGGACGAAGCCGACGTGCAACGCATCCTGGCTTTCGACGAAACGATGATCG
GGTCGGATGGCATCCCGGTCGGCGAGAATCCGCACCCGCGTCTGTGGGGCACATTCCCGCGTGTGCTGGGGCATTACTGC
CGCGAGGTCGGCCTGTTCCCGCTGGAGACCGCCGTCTGGAAGATGACCGGCCTGACCGCGCGCAACTTCGGCCTGCACGG
GCGCGGCACGCTGGCGGTCGGCAACCATGCCGACATGGTGATCTTCGATGCCGGCACCATCCGCGACGCCGCCGACTACG
ACACGCCCACGCGCCCGGCCGAGGGCATCGACACCGTGATCGTCAACGGCGCCATCACCTGGCACGGCGGGCAGCATACC
GGCGCCAGGAACGGCCAGGTCATCAAGCGTCGTCACGCCGCCTGA

Upstream 100 bases:

>100_bases
GCCCATTTGCCGCGAGCAGGCACCGGCGCTGACGGCGCGCCCGTCGGATGCGCCGGGCGGCCACCAGGTCGCCTGTCATT
TCCGCTGAAGGACACCCCCA

Downstream 100 bases:

>100_bases
TGACCTGGCGGGAAGCACCGAGGCCGAGTGTCATGAGCCCCGGCCTCGGACGCTTCCTCGTAGCGGCTAGAAGCGGTGGC
GCAAGCGCGACTTTCCGGAA

Product: N-acyl-D-amino-acid deacylase

Products: NA

Alternate protein names: N-acyl-D-amino-acid deacylase [H]

Number of amino acids: Translated: 494; Mature: 493

Protein sequence:

>494_residues
MPLQETRSMAEQASNHHDLLIRGGTVIDGSKAPRFTADIAVRDGRIAAIGDLAGHTAERTLDAAGRIVAPGFIDSHTHDD
QAVLSQAAMPFKISQGVTTVVAGNCGISAAPLRADMDLPMPLGLIDAPPEGRFTTFAAYLDALRATPSSVNVAAMVGHST
LRAVTMSALDRPANDDEIAAMQALVEEAMQAGAIGLSTGTFYPPAIKATTEEIIEVCRPLSARKALYVTHMRNESDQVME
ALEETFQIGRALEVPVVVSHHKVQNTPNFGRSRVTLPFIQETMQHQCVSLDCYPYTAGSTMIRTEPAMLEGRVRIASSVP
HPECTGRDLDDIAREWGVAKQEAARRLQPGTAIYFLMDEADVQRILAFDETMIGSDGIPVGENPHPRLWGTFPRVLGHYC
REVGLFPLETAVWKMTGLTARNFGLHGRGTLAVGNHADMVIFDAGTIRDAADYDTPTRPAEGIDTVIVNGAITWHGGQHT
GARNGQVIKRRHAA

Sequences:

>Translated_494_residues
MPLQETRSMAEQASNHHDLLIRGGTVIDGSKAPRFTADIAVRDGRIAAIGDLAGHTAERTLDAAGRIVAPGFIDSHTHDD
QAVLSQAAMPFKISQGVTTVVAGNCGISAAPLRADMDLPMPLGLIDAPPEGRFTTFAAYLDALRATPSSVNVAAMVGHST
LRAVTMSALDRPANDDEIAAMQALVEEAMQAGAIGLSTGTFYPPAIKATTEEIIEVCRPLSARKALYVTHMRNESDQVME
ALEETFQIGRALEVPVVVSHHKVQNTPNFGRSRVTLPFIQETMQHQCVSLDCYPYTAGSTMIRTEPAMLEGRVRIASSVP
HPECTGRDLDDIAREWGVAKQEAARRLQPGTAIYFLMDEADVQRILAFDETMIGSDGIPVGENPHPRLWGTFPRVLGHYC
REVGLFPLETAVWKMTGLTARNFGLHGRGTLAVGNHADMVIFDAGTIRDAADYDTPTRPAEGIDTVIVNGAITWHGGQHT
GARNGQVIKRRHAA
>Mature_493_residues
PLQETRSMAEQASNHHDLLIRGGTVIDGSKAPRFTADIAVRDGRIAAIGDLAGHTAERTLDAAGRIVAPGFIDSHTHDDQ
AVLSQAAMPFKISQGVTTVVAGNCGISAAPLRADMDLPMPLGLIDAPPEGRFTTFAAYLDALRATPSSVNVAAMVGHSTL
RAVTMSALDRPANDDEIAAMQALVEEAMQAGAIGLSTGTFYPPAIKATTEEIIEVCRPLSARKALYVTHMRNESDQVMEA
LEETFQIGRALEVPVVVSHHKVQNTPNFGRSRVTLPFIQETMQHQCVSLDCYPYTAGSTMIRTEPAMLEGRVRIASSVPH
PECTGRDLDDIAREWGVAKQEAARRLQPGTAIYFLMDEADVQRILAFDETMIGSDGIPVGENPHPRLWGTFPRVLGHYCR
EVGLFPLETAVWKMTGLTARNFGLHGRGTLAVGNHADMVIFDAGTIRDAADYDTPTRPAEGIDTVIVNGAITWHGGQHTG
ARNGQVIKRRHAA

Specific function: Has a wide specificity; hydrolyzes N-acyl derivative of neutral D-amino acids [H]

COG id: COG3653

COG function: function code Q; N-acyl-D-aspartate/D-glutamate deacylase

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the N-acyl-D-amino-acid deacylase family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013108
- InterPro:   IPR023100
- InterPro:   IPR012855
- InterPro:   IPR011059 [H]

Pfam domain/function: PF07969 Amidohydro_3; PF07908 D-aminoacyl_C [H]

EC number: =3.5.1.81 [H]

Molecular weight: Translated: 53277; Mature: 53146

Theoretical pI: Translated: 6.03; Mature: 6.03

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
3.6 %Met     (Translated Protein)
4.9 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
3.4 %Met     (Mature Protein)
4.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPLQETRSMAEQASNHHDLLIRGGTVIDGSKAPRFTADIAVRDGRIAAIGDLAGHTAERT
CCHHHHHHHHHHCCCCCEEEEECCEEECCCCCCCEEEEEEEECCCEEEEHHHHCCHHHHH
LDAAGRIVAPGFIDSHTHDDQAVLSQAAMPFKISQGVTTVVAGNCGISAAPLRADMDLPM
HHHCCCEECCCCCCCCCCCHHHHHHHCCCCEEECCCCEEEEECCCCCCCCCCCCCCCCCC
PLGLIDAPPEGRFTTFAAYLDALRATPSSVNVAAMVGHSTLRAVTMSALDRPANDDEIAA
CCCCCCCCCCCCHHHHHHHHHHHHCCCCCCEEEEECCHHHHHHHHHHHHCCCCCCHHHHH
MQALVEEAMQAGAIGLSTGTFYPPAIKATTEEIIEVCRPLSARKALYVTHMRNESDQVME
HHHHHHHHHHCCCEEECCCCCCCCCHHHHHHHHHHHHCCCHHCCEEEEEECCCCHHHHHH
ALEETFQIGRALEVPVVVSHHKVQNTPNFGRSRVTLPFIQETMQHQCVSLDCYPYTAGST
HHHHHHHHCCEECCCEEEECCCCCCCCCCCCCEEEHHHHHHHHHHHHEEEEEEEECCCCE
MIRTEPAMLEGRVRIASSVPHPECTGRDLDDIAREWGVAKQEAARRLQPGTAIYFLMDEA
EEECCCHHHHCCEEEECCCCCCCCCCCCHHHHHHHHCCHHHHHHHHCCCCCEEEEEECCH
DVQRILAFDETMIGSDGIPVGENPHPRLWGTFPRVLGHYCREVGLFPLETAVWKMTGLTA
HHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHCCEE
RNFGLHGRGTLAVGNHADMVIFDAGTIRDAADYDTPTRPAEGIDTVIVNGAITWHGGQHT
ECCCCCCCEEEEECCCCCEEEECCCCCCCCCCCCCCCCCCCCCCEEEEEEEEEECCCCCC
GARNGQVIKRRHAA
CCCCCCHHHHCCCC
>Mature Secondary Structure 
PLQETRSMAEQASNHHDLLIRGGTVIDGSKAPRFTADIAVRDGRIAAIGDLAGHTAERT
CHHHHHHHHHHCCCCCEEEEECCEEECCCCCCCEEEEEEEECCCEEEEHHHHCCHHHHH
LDAAGRIVAPGFIDSHTHDDQAVLSQAAMPFKISQGVTTVVAGNCGISAAPLRADMDLPM
HHHCCCEECCCCCCCCCCCHHHHHHHCCCCEEECCCCEEEEECCCCCCCCCCCCCCCCCC
PLGLIDAPPEGRFTTFAAYLDALRATPSSVNVAAMVGHSTLRAVTMSALDRPANDDEIAA
CCCCCCCCCCCCHHHHHHHHHHHHCCCCCCEEEEECCHHHHHHHHHHHHCCCCCCHHHHH
MQALVEEAMQAGAIGLSTGTFYPPAIKATTEEIIEVCRPLSARKALYVTHMRNESDQVME
HHHHHHHHHHCCCEEECCCCCCCCCHHHHHHHHHHHHCCCHHCCEEEEEECCCCHHHHHH
ALEETFQIGRALEVPVVVSHHKVQNTPNFGRSRVTLPFIQETMQHQCVSLDCYPYTAGST
HHHHHHHHCCEECCCEEEECCCCCCCCCCCCCEEEHHHHHHHHHHHHEEEEEEEECCCCE
MIRTEPAMLEGRVRIASSVPHPECTGRDLDDIAREWGVAKQEAARRLQPGTAIYFLMDEA
EEECCCHHHHCCEEEECCCCCCCCCCCCHHHHHHHHCCHHHHHHHHCCCCCEEEEEECCH
DVQRILAFDETMIGSDGIPVGENPHPRLWGTFPRVLGHYCREVGLFPLETAVWKMTGLTA
HHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHCCEE
RNFGLHGRGTLAVGNHADMVIFDAGTIRDAADYDTPTRPAEGIDTVIVNGAITWHGGQHT
ECCCCCCCEEEEECCCCCEEEECCCCCCCCCCCCCCCCCCCCCCEEEEEEEEEECCCCCC
GARNGQVIKRRHAA
CCCCCCHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8541651 [H]