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The map label for this gene is ygaF [C]

Identifier: 94314005

GI number: 94314005

Start: 1774806

End: 1775963

Strand: Direct

Name: ygaF [C]

Synonym: Rmet_5086

Alternate gene names: 94314005

Gene position: 1774806-1775963 (Clockwise)

Preceding gene: 94314003

Following gene: 94314006

Centisome position: 68.79

GC content: 69.69

Gene sequence:

>1158_bases
ATGACTGCAACCACGGCCCCACTCCGCTCTGACTTTCTGGTAATCGGCGCAGGTATCGCTGGCGCCTCCGTCGCGTACTG
GCTCGCGCCGCACGGCAGCGTCACCGTGCTGGAGCGGGAAAGCCAGCCGGGCTATCACTCCACCGGCCGATCCGCCGCGC
TGTTCATGGAAAGCTACGGCACGCCTCAGGTGCGCGCGCTGACGATGGCCAGCCACGCCTTTCTCGCAAATCCGCCGCAG
GGCTTTGCCACGCATCCGCTGCTGACGCCGCGCGGCGCGCTGATGGTTGCCGCGCCCGGGCAGCAGGCCCTGCTCGACGA
ACACTGGGAAATCCTGCGCGCGATGGCGCCAGAGGCCGAACTGCTGACCGCGCAGCAGGCTTGCGAACGTGTGCCCGTGC
TGCGTCCGGAGATGGTGATCGGCGCGGTCTACGAGCCCGGCGCGGCCGACATGGATGTCCATGCGATCCATCAAGGCTAC
CTGCGTGGCATACGTCAGGCCGGTGGCAAGCTGGTCTGCGACGCGGAGGTCCGCGCCATCGCGCGTCATGGCGATGTCTG
GCGCGTGGAAGCGGGACAAGCCGTCTACGAAGCGCCGGTCGTGCTGAATGCCGCCGGTGCGTGGGCCGACGTGATCGCGC
GCCAGGCCGGCGTCTCCCCGCTTGGCTTGCAGCCCTGCCGGCGTTCGGCCTTTGTTTTCCAGCCGCCCGCCGGCGTCGAC
AGCCATGGCTGGCCCATGGTGCACAGTGCCGACGAGTCCTGGTACATCAAGCCCGACGCTGGCATGTTGCTCGGCTCTCC
GGCCAATGCCGACCCGGTCGAGCCGCAAGACGTGCAGCCCGAGGAACTGGATATCGCGATGGCGATCCACCGCATCGAGG
AAGCCACCACGCTGACGATCCGCCATCCCGCCCGTACCTGGGCCGGCCTGCGCTCCTTCGTGGCGGACGGCGACCTGGTC
GGTGGCTTCGACGATCGCGCGCCCGGCTTCTTCTGGGTGGCTGCGCAGGGTGGCTATGGCATCCAGACGTCCGCGGCCAT
GGGCGAGACCTGCGCCGCGCTGGCGCGTGGCCTGCCTGTGCCCGCGCACGCCGCGTCCTTCGGGCTGACCGCCGAAATGC
TGGGGCCCGCGCGGTTGCGCCGCGCTGCGGCCTCATAG

Upstream 100 bases:

>100_bases
GCAATTTGCGTATTCGCAAATTCTTGAATACACTCGCTGGACCCATGAGCCTGCGCCCCGCCTTGCGCCGGCGTGCAACG
TCCCCAAGCACCCCTTGCCA

Downstream 100 bases:

>100_bases
CAGCGGGCCCGGCATCCACGGGCCACGCGCAGAAGAAACGAAAGCACAACGACAGGTACAACAACGACTCCAGGAGACAG
CCGTGCGTGTGTTCAGCGCT

Product: FAD dependent oxidoreductase

Products: NA

Alternate protein names: Oxidoreductase; Glycine/D-Amino Acid Oxidase Deaminating; Glycine/D-Amino Acid Oxidase; Aminomethyl Transferase Family Protein; Amino Acid Oxidase; FAD-Dependent Oxidoreductase; FAD Dependent Oxidoreductase Domain-Containing Protein; Glycine Oxidase; FAD Dependent Oxidoreductase/Aminomethyl Transferase; FAD Dependent Oxidoreductase Family; Oxidase; Sarcosine Oxidase Subunit Beta; Oxidoreductase-Like Protein; FAD-Dependent Glycerol-3-Phosphate Dehydrogenase Protein; Fad Dependent Oxidoreductase

Number of amino acids: Translated: 385; Mature: 384

Protein sequence:

>385_residues
MTATTAPLRSDFLVIGAGIAGASVAYWLAPHGSVTVLERESQPGYHSTGRSAALFMESYGTPQVRALTMASHAFLANPPQ
GFATHPLLTPRGALMVAAPGQQALLDEHWEILRAMAPEAELLTAQQACERVPVLRPEMVIGAVYEPGAADMDVHAIHQGY
LRGIRQAGGKLVCDAEVRAIARHGDVWRVEAGQAVYEAPVVLNAAGAWADVIARQAGVSPLGLQPCRRSAFVFQPPAGVD
SHGWPMVHSADESWYIKPDAGMLLGSPANADPVEPQDVQPEELDIAMAIHRIEEATTLTIRHPARTWAGLRSFVADGDLV
GGFDDRAPGFFWVAAQGGYGIQTSAAMGETCAALARGLPVPAHAASFGLTAEMLGPARLRRAAAS

Sequences:

>Translated_385_residues
MTATTAPLRSDFLVIGAGIAGASVAYWLAPHGSVTVLERESQPGYHSTGRSAALFMESYGTPQVRALTMASHAFLANPPQ
GFATHPLLTPRGALMVAAPGQQALLDEHWEILRAMAPEAELLTAQQACERVPVLRPEMVIGAVYEPGAADMDVHAIHQGY
LRGIRQAGGKLVCDAEVRAIARHGDVWRVEAGQAVYEAPVVLNAAGAWADVIARQAGVSPLGLQPCRRSAFVFQPPAGVD
SHGWPMVHSADESWYIKPDAGMLLGSPANADPVEPQDVQPEELDIAMAIHRIEEATTLTIRHPARTWAGLRSFVADGDLV
GGFDDRAPGFFWVAAQGGYGIQTSAAMGETCAALARGLPVPAHAASFGLTAEMLGPARLRRAAAS
>Mature_384_residues
TATTAPLRSDFLVIGAGIAGASVAYWLAPHGSVTVLERESQPGYHSTGRSAALFMESYGTPQVRALTMASHAFLANPPQG
FATHPLLTPRGALMVAAPGQQALLDEHWEILRAMAPEAELLTAQQACERVPVLRPEMVIGAVYEPGAADMDVHAIHQGYL
RGIRQAGGKLVCDAEVRAIARHGDVWRVEAGQAVYEAPVVLNAAGAWADVIARQAGVSPLGLQPCRRSAFVFQPPAGVDS
HGWPMVHSADESWYIKPDAGMLLGSPANADPVEPQDVQPEELDIAMAIHRIEEATTLTIRHPARTWAGLRSFVADGDLVG
GFDDRAPGFFWVAAQGGYGIQTSAAMGETCAALARGLPVPAHAASFGLTAEMLGPARLRRAAAS

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Homo sapiens, GI8923708, Length=408, Percent_Identity=24.7549019607843, Blast_Score=70, Evalue=4e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 40679; Mature: 40547

Theoretical pI: Translated: 5.88; Mature: 5.88

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
3.1 %Met     (Translated Protein)
4.2 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
3.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTATTAPLRSDFLVIGAGIAGASVAYWLAPHGSVTVLERESQPGYHSTGRSAALFMESYG
CCCCCCCCCCCEEEEECCCCCCCEEEEECCCCCEEEEEECCCCCCCCCCCCEEEEEECCC
TPQVRALTMASHAFLANPPQGFATHPLLTPRGALMVAAPGQQALLDEHWEILRAMAPEAE
CCCEEEEEEECHHEECCCCCCCCCCCCCCCCCCEEEECCCHHHHHHHHHHHHHHHCCCHH
LLTAQQACERVPVLRPEMVIGAVYEPGAADMDVHAIHQGYLRGIRQAGGKLVCDAEVRAI
HHHHHHHHHHCCCCCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHCCCEEEECHHHHHH
ARHGDVWRVEAGQAVYEAPVVLNAAGAWADVIARQAGVSPLGLQPCRRSAFVFQPPAGVD
HHCCCEEEEECCCEEEECCEEEECCCHHHHHHHHHHCCCCCCCCCCCCCEEEECCCCCCC
SHGWPMVHSADESWYIKPDAGMLLGSPANADPVEPQDVQPEELDIAMAIHRIEEATTLTI
CCCCCEEEECCCCEEECCCCCEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCEEEEE
RHPARTWAGLRSFVADGDLVGGFDDRAPGFFWVAAQGGYGIQTSAAMGETCAALARGLPV
ECCHHHHHHHHHHHCCCCEECCCCCCCCCEEEEEECCCCCCCCHHHHHHHHHHHHHCCCC
PAHAASFGLTAEMLGPARLRRAAAS
CCHHHHHCCHHHHCCHHHHHHHHCC
>Mature Secondary Structure 
TATTAPLRSDFLVIGAGIAGASVAYWLAPHGSVTVLERESQPGYHSTGRSAALFMESYG
CCCCCCCCCCEEEEECCCCCCCEEEEECCCCCEEEEEECCCCCCCCCCCCEEEEEECCC
TPQVRALTMASHAFLANPPQGFATHPLLTPRGALMVAAPGQQALLDEHWEILRAMAPEAE
CCCEEEEEEECHHEECCCCCCCCCCCCCCCCCCEEEECCCHHHHHHHHHHHHHHHCCCHH
LLTAQQACERVPVLRPEMVIGAVYEPGAADMDVHAIHQGYLRGIRQAGGKLVCDAEVRAI
HHHHHHHHHHCCCCCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHCCCEEEECHHHHHH
ARHGDVWRVEAGQAVYEAPVVLNAAGAWADVIARQAGVSPLGLQPCRRSAFVFQPPAGVD
HHCCCEEEEECCCEEEECCEEEECCCHHHHHHHHHHCCCCCCCCCCCCCEEEECCCCCCC
SHGWPMVHSADESWYIKPDAGMLLGSPANADPVEPQDVQPEELDIAMAIHRIEEATTLTI
CCCCCEEEECCCCEEECCCCCEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCEEEEE
RHPARTWAGLRSFVADGDLVGGFDDRAPGFFWVAAQGGYGIQTSAAMGETCAALARGLPV
ECCHHHHHHHHHHHCCCCEECCCCCCCCCEEEEEECCCCCCCCHHHHHHHHHHHHHCCCC
PAHAASFGLTAEMLGPARLRRAAAS
CCHHHHHCCHHHHCCHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA