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The map label for this gene is atoA1 [H]

Identifier: 94313982

GI number: 94313982

Start: 1750168

End: 1750869

Strand: Direct

Name: atoA1 [H]

Synonym: Rmet_5060

Alternate gene names: 94313982

Gene position: 1750168-1750869 (Clockwise)

Preceding gene: 94313981

Following gene: 94313983

Centisome position: 67.83

GC content: 65.38

Gene sequence:

>702_bases
ATGCATGACACCCTGCCCCGCCTCGGCACGCTGCCGCGACTGAGCCGCGCCCAGATGGCGCGCATCGTCGCCCATGACAT
TCCCGATGGCAGCGTCGTCAATCTCGGCATCGGGATGCCCACGCTCGTATCCGACCAGTTGCCCGACGACCGCGAGATCG
TGCTGCACAGCGAGAACGGCATTCTCGGCATGGGTCCGGTTATCCGCGAAGGCGAGACCGACCCGGACCTGATCAACGCC
AGCAAGGAGCCGATCAGCCTGATCGCCGGCGCGTCGATCTCGGACCACGCGGTGTCGTTCACCATGATGCGCGGCGGGCA
TATCGATATCACTGTGCTGGGCGGATTCCAGGTCGCGGCCAATGGCGATCTGGCCAACTGGTCAACCGGCGAGCCCGATG
CGATTCCTGCGGTGGGCGGCGCGATGGACCTGGTAGTGGGCGCGGCCAGGCTGTTCGTGATGATGGAACACGTGACGCGC
GACGGACAACCGAAGATCGTCGAACGCTGCAGCTATCCGTTGACGGGCATCGGCGTAGTTGACCGCATTTATACCGACCT
GGCCGTGATCGACGTTCGGCCCGGCAAGCCATTGCTGGTGACCGGCCTGGTCGAGGGCGTGTCGTTCGAAACGGTGCAGG
CGCTATCGGCCGCACCACTCACGCTGGCGGCCGACTGCCGCGTGCTAAGGGCAGGACGCTGA

Upstream 100 bases:

>100_bases
GTCGACGAGATCGTCCCGCTGGGCGAGATGACGCCGCAACACGTGATGACGCCGGGAATCTTCGTCCAGACAGTGGTCCT
GGCAACATCGGGAGACAGCC

Downstream 100 bases:

>100_bases
AAGCGTCGACGGATCGGGCAGGATCACCACCAGAACAAAAAAGGGGACAAGCATGACCAGGATGACAACCGGAAAGATGA
GCCTGACCGCCCGCATCGCG

Product: acetyl-CoA:acetoacetyl-CoA transferase subunit beta

Products: NA

Alternate protein names: Beta-ketoadipate:succinyl-CoA transferase subunit B [H]

Number of amino acids: Translated: 233; Mature: 233

Protein sequence:

>233_residues
MHDTLPRLGTLPRLSRAQMARIVAHDIPDGSVVNLGIGMPTLVSDQLPDDREIVLHSENGILGMGPVIREGETDPDLINA
SKEPISLIAGASISDHAVSFTMMRGGHIDITVLGGFQVAANGDLANWSTGEPDAIPAVGGAMDLVVGAARLFVMMEHVTR
DGQPKIVERCSYPLTGIGVVDRIYTDLAVIDVRPGKPLLVTGLVEGVSFETVQALSAAPLTLAADCRVLRAGR

Sequences:

>Translated_233_residues
MHDTLPRLGTLPRLSRAQMARIVAHDIPDGSVVNLGIGMPTLVSDQLPDDREIVLHSENGILGMGPVIREGETDPDLINA
SKEPISLIAGASISDHAVSFTMMRGGHIDITVLGGFQVAANGDLANWSTGEPDAIPAVGGAMDLVVGAARLFVMMEHVTR
DGQPKIVERCSYPLTGIGVVDRIYTDLAVIDVRPGKPLLVTGLVEGVSFETVQALSAAPLTLAADCRVLRAGR
>Mature_233_residues
MHDTLPRLGTLPRLSRAQMARIVAHDIPDGSVVNLGIGMPTLVSDQLPDDREIVLHSENGILGMGPVIREGETDPDLINA
SKEPISLIAGASISDHAVSFTMMRGGHIDITVLGGFQVAANGDLANWSTGEPDAIPAVGGAMDLVVGAARLFVMMEHVTR
DGQPKIVERCSYPLTGIGVVDRIYTDLAVIDVRPGKPLLVTGLVEGVSFETVQALSAAPLTLAADCRVLRAGR

Specific function: SHORT-CHAIN FATTY ACIDS METABOLISM. [C]

COG id: COG2057

COG function: function code I; Acyl CoA:acetate/3-ketoacid CoA transferase, beta subunit

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the 3-oxoacid CoA-transferase subunit B family [H]

Homologues:

Organism=Homo sapiens, GI11545841, Length=214, Percent_Identity=42.0560747663551, Blast_Score=168, Evalue=3e-42,
Organism=Homo sapiens, GI4557817, Length=199, Percent_Identity=44.2211055276382, Blast_Score=162, Evalue=2e-40,
Organism=Escherichia coli, GI1788552, Length=216, Percent_Identity=43.5185185185185, Blast_Score=178, Evalue=3e-46,
Organism=Caenorhabditis elegans, GI17531517, Length=214, Percent_Identity=45.3271028037383, Blast_Score=182, Evalue=1e-46,
Organism=Drosophila melanogaster, GI21358325, Length=215, Percent_Identity=43.7209302325581, Blast_Score=179, Evalue=1e-45,
Organism=Drosophila melanogaster, GI24655794, Length=215, Percent_Identity=43.7209302325581, Blast_Score=179, Evalue=1e-45,

Paralogues:

None

Copy number: 369 Molecules/Cell In: Growth Phase, Glucose-minimal MOPS Media. [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR012791
- InterPro:   IPR004165
- InterPro:   IPR004164 [H]

Pfam domain/function: PF01144 CoA_trans [H]

EC number: =2.8.3.6 [H]

Molecular weight: Translated: 24543; Mature: 24543

Theoretical pI: Translated: 4.75; Mature: 4.75

Prosite motif: PS01274 COA_TRANSF_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
3.9 %Met     (Translated Protein)
4.7 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
3.9 %Met     (Mature Protein)
4.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MHDTLPRLGTLPRLSRAQMARIVAHDIPDGSVVNLGIGMPTLVSDQLPDDREIVLHSENG
CCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCEEEECCCCCHHHHCCCCCCCEEEEECCCC
ILGMGPVIREGETDPDLINASKEPISLIAGASISDHAVSFTMMRGGHIDITVLGGFQVAA
EEECCCCCCCCCCCHHHHCCCCCCEEEEECCCCCCCEEEEEEEECCEEEEEEEECEEEEE
NGDLANWSTGEPDAIPAVGGAMDLVVGAARLFVMMEHVTRDGQPKIVERCSYPLTGIGVV
CCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHCCCCCCCHHHH
DRIYTDLAVIDVRPGKPLLVTGLVEGVSFETVQALSAAPLTLAADCRVLRAGR
HHHHHCEEEEEECCCCCEEEEEECCCCCHHHHHHHHCCCEEEECCCEEEECCC
>Mature Secondary Structure
MHDTLPRLGTLPRLSRAQMARIVAHDIPDGSVVNLGIGMPTLVSDQLPDDREIVLHSENG
CCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCEEEECCCCCHHHHCCCCCCCEEEEECCCC
ILGMGPVIREGETDPDLINASKEPISLIAGASISDHAVSFTMMRGGHIDITVLGGFQVAA
EEECCCCCCCCCCCHHHHCCCCCCEEEEECCCCCCCEEEEEEEECCEEEEEEEECEEEEE
NGDLANWSTGEPDAIPAVGGAMDLVVGAARLFVMMEHVTRDGQPKIVERCSYPLTGIGVV
CCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHCCCCCCCHHHH
DRIYTDLAVIDVRPGKPLLVTGLVEGVSFETVQALSAAPLTLAADCRVLRAGR
HHHHHCEEEEEECCCCCEEEEEECCCCCHHHHHHHHCCCEEEECCCEEEECCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8063101; 8125318 [H]