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The map label for this gene is yfdE [H]

Identifier: 94313941

GI number: 94313941

Start: 1700586

End: 1701752

Strand: Direct

Name: yfdE [H]

Synonym: Rmet_5019

Alternate gene names: 94313941

Gene position: 1700586-1701752 (Clockwise)

Preceding gene: 94313939

Following gene: 94313942

Centisome position: 65.91

GC content: 69.75

Gene sequence:

>1167_bases
ATGGGCGTCCTCAGCGGTATCCGCGTCATCGAATTCGAAGCCATCGGCCCTGGGCCGTTCGGCGCCATGCTTCTGGCCGA
CATGGGCGCGGACGTGCTGCGCATCGACCGGCCCGTGGCCCCCACGGACCTGGGCCCGCAGCGCGGCCCCGGCAAGCGCA
TCGACGTCACGGGGCGTGGCCGCCGCTCGGTCACCATCGACCTCAAGCAGCCGGAAGGCCAGCAGGCCGCGCTGGAACTG
ATCGCCAAGGCCGATGTGGTGATCGAGGGATTCCGCCCCGGCACCATGGAACGCCTTGGGTTGGGCCCCGCCATCGCGCT
GGCGCGCAATCCGCGCCTGATTTACGGCCGCATGACCGGCTGGGGCCAGACCGGTCCGATGGCCGACCGCGCGGGGCACG
ACCTCAACTACATTGCGCTGTCGGGCGTGCTGTCGGGGATCGGCCGTGCCGGCGAGGCCCCGGTTCCGCCGCTGAACCTG
GTGGGCGATTACGGTGGCGGCGGCATGTTGCTGGCGCTTGGCGTGGTATCCGCCTTGCTCAACGTGCATCGTGGCGGCAA
GGGTCAGGTGGTGGATGCGGCGATGATCGAAGGCGCCGCGCAGCTTGGCGCGGTGATCTGGGGCCTGATTGCCTCGGGCA
ACTGGCGCGAGTCGCGTGGCAGCAACTTGCTGGACGGCGGCACCCCCTGGTACGACAGCTATTGCACCCGGGATGGCCAG
TACATGTCGGTGGGCGCCGTGGAGTCGCGTTTCTACGCTGAACTGATCGAAAAGCTTGGCCTGGCCGGCGAGACCCTGCC
CGGCCAGCACGACCGCGCCGGCTGGCCCACCCTGCGCCGCCGCTTCACTGAAGTATTCCTGACCCGTACGCGCGATGAGT
GGTGCGCGATCTTCGACGGCAGCGATGCCTGCGTGGCGCCGGTGCTGACCTTTTCCGAAGCGCCGGACCATCCGCAGCAC
CGCGCGCGCGGCAGCTTCATCGAAGTGGACGGCGTGGTGCAACCCGGCCCAGCGCCGCGCTTTCTCGGCACCCCGTCCGA
AGTCCGCCACGCAGCCCCGGCACGTGGCCAGCATGGCGGCGCCGCGCTGCGCGAATGGGGATTCGACGACGCCGCAATTG
CCAAACTGCGCGCGCAGGGCCTCGGCTTTGTCGAGGCGCAGCCATGA

Upstream 100 bases:

>100_bases
CCGCGCAAACCCGACACGTCCAACCTGATACGGGTGGCTTCGCCCCATGTCGGATTTTGGTCTACTGGCAGGCAGACAAA
ACCATCTTCGGGAGACAACC

Downstream 100 bases:

>100_bases
GCGCGCCGATGCTGGTCCTGCTGCCGGCCACCTCGGACACGCCGCACGGCTTCAGGCGCGTGCGGTCCAGCCCGGGCTTT
ATGACGACCTGCGGCGAGTT

Product: alpha-methylacyl-CoA racemase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 388; Mature: 387

Protein sequence:

>388_residues
MGVLSGIRVIEFEAIGPGPFGAMLLADMGADVLRIDRPVAPTDLGPQRGPGKRIDVTGRGRRSVTIDLKQPEGQQAALEL
IAKADVVIEGFRPGTMERLGLGPAIALARNPRLIYGRMTGWGQTGPMADRAGHDLNYIALSGVLSGIGRAGEAPVPPLNL
VGDYGGGGMLLALGVVSALLNVHRGGKGQVVDAAMIEGAAQLGAVIWGLIASGNWRESRGSNLLDGGTPWYDSYCTRDGQ
YMSVGAVESRFYAELIEKLGLAGETLPGQHDRAGWPTLRRRFTEVFLTRTRDEWCAIFDGSDACVAPVLTFSEAPDHPQH
RARGSFIEVDGVVQPGPAPRFLGTPSEVRHAAPARGQHGGAALREWGFDDAAIAKLRAQGLGFVEAQP

Sequences:

>Translated_388_residues
MGVLSGIRVIEFEAIGPGPFGAMLLADMGADVLRIDRPVAPTDLGPQRGPGKRIDVTGRGRRSVTIDLKQPEGQQAALEL
IAKADVVIEGFRPGTMERLGLGPAIALARNPRLIYGRMTGWGQTGPMADRAGHDLNYIALSGVLSGIGRAGEAPVPPLNL
VGDYGGGGMLLALGVVSALLNVHRGGKGQVVDAAMIEGAAQLGAVIWGLIASGNWRESRGSNLLDGGTPWYDSYCTRDGQ
YMSVGAVESRFYAELIEKLGLAGETLPGQHDRAGWPTLRRRFTEVFLTRTRDEWCAIFDGSDACVAPVLTFSEAPDHPQH
RARGSFIEVDGVVQPGPAPRFLGTPSEVRHAAPARGQHGGAALREWGFDDAAIAKLRAQGLGFVEAQP
>Mature_387_residues
GVLSGIRVIEFEAIGPGPFGAMLLADMGADVLRIDRPVAPTDLGPQRGPGKRIDVTGRGRRSVTIDLKQPEGQQAALELI
AKADVVIEGFRPGTMERLGLGPAIALARNPRLIYGRMTGWGQTGPMADRAGHDLNYIALSGVLSGIGRAGEAPVPPLNLV
GDYGGGGMLLALGVVSALLNVHRGGKGQVVDAAMIEGAAQLGAVIWGLIASGNWRESRGSNLLDGGTPWYDSYCTRDGQY
MSVGAVESRFYAELIEKLGLAGETLPGQHDRAGWPTLRRRFTEVFLTRTRDEWCAIFDGSDACVAPVLTFSEAPDHPQHR
ARGSFIEVDGVVQPGPAPRFLGTPSEVRHAAPARGQHGGAALREWGFDDAAIAKLRAQGLGFVEAQP

Specific function: Unknown

COG id: COG1804

COG function: function code C; Predicted acyl-CoA transferases/carnitine dehydratase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the CaiB/BaiF CoA-transferase family [H]

Homologues:

Organism=Homo sapiens, GI42794625, Length=382, Percent_Identity=47.6439790575916, Blast_Score=363, Evalue=1e-100,
Organism=Homo sapiens, GI266456254, Length=382, Percent_Identity=47.6439790575916, Blast_Score=362, Evalue=1e-100,
Organism=Homo sapiens, GI266458393, Length=259, Percent_Identity=50.965250965251, Blast_Score=262, Evalue=3e-70,
Organism=Homo sapiens, GI266458397, Length=256, Percent_Identity=50.78125, Blast_Score=260, Evalue=2e-69,
Organism=Homo sapiens, GI300863128, Length=400, Percent_Identity=28, Blast_Score=142, Evalue=7e-34,
Organism=Homo sapiens, GI266458395, Length=141, Percent_Identity=50.354609929078, Blast_Score=138, Evalue=8e-33,
Organism=Homo sapiens, GI42822893, Length=141, Percent_Identity=50.354609929078, Blast_Score=137, Evalue=1e-32,
Organism=Homo sapiens, GI300863124, Length=426, Percent_Identity=26.7605633802817, Blast_Score=134, Evalue=1e-31,
Organism=Homo sapiens, GI300863126, Length=399, Percent_Identity=24.812030075188, Blast_Score=111, Evalue=1e-24,
Organism=Homo sapiens, GI13376042, Length=426, Percent_Identity=23.943661971831, Blast_Score=99, Evalue=5e-21,
Organism=Escherichia coli, GI87082093, Length=382, Percent_Identity=29.8429319371728, Blast_Score=139, Evalue=3e-34,
Organism=Escherichia coli, GI1786222, Length=406, Percent_Identity=27.0935960591133, Blast_Score=99, Evalue=6e-22,
Organism=Escherichia coli, GI1788717, Length=207, Percent_Identity=29.951690821256, Blast_Score=83, Evalue=3e-17,
Organism=Caenorhabditis elegans, GI115535051, Length=351, Percent_Identity=36.4672364672365, Blast_Score=228, Evalue=6e-60,
Organism=Caenorhabditis elegans, GI32564160, Length=344, Percent_Identity=36.3372093023256, Blast_Score=221, Evalue=5e-58,
Organism=Drosophila melanogaster, GI24585488, Length=354, Percent_Identity=46.045197740113, Blast_Score=303, Evalue=2e-82,
Organism=Drosophila melanogaster, GI24648431, Length=409, Percent_Identity=27.3838630806846, Blast_Score=115, Evalue=4e-26,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003673 [H]

Pfam domain/function: PF02515 CoA_transf_3 [H]

EC number: NA

Molecular weight: Translated: 41065; Mature: 40934

Theoretical pI: Translated: 6.64; Mature: 6.64

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGVLSGIRVIEFEAIGPGPFGAMLLADMGADVLRIDRPVAPTDLGPQRGPGKRIDVTGRG
CCCCCCCEEEEEEECCCCCHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCEEEECCCC
RRSVTIDLKQPEGQQAALELIAKADVVIEGFRPGTMERLGLGPAIALARNPRLIYGRMTG
CEEEEEEECCCCCHHHHHHHHHHHCEEEECCCCCCHHHHCCCCEEEEECCCEEEEEECCC
WGQTGPMADRAGHDLNYIALSGVLSGIGRAGEAPVPPLNLVGDYGGGGMLLALGVVSALL
CCCCCCCCHHCCCCCHHHHHHHHHHHHCCCCCCCCCCHHEEECCCCCHHHHHHHHHHHHH
NVHRGGKGQVVDAAMIEGAAQLGAVIWGLIASGNWRESRGSNLLDGGTPWYDSYCTRDGQ
HHCCCCCCCEEHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHCCCCC
YMSVGAVESRFYAELIEKLGLAGETLPGQHDRAGWPTLRRRFTEVFLTRTRDEWCAIFDG
EEEECHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEEECC
SDACVAPVLTFSEAPDHPQHRARGSFIEVDGVVQPGPAPRFLGTPSEVRHAAPARGQHGG
CCCHHHHHEECCCCCCCHHHHHCCCEEEECCEECCCCCCCCCCCHHHHHHCCCCCCCCCC
AALREWGFDDAAIAKLRAQGLGFVEAQP
HHHHHCCCCHHHHHHHHHHCCCEEECCC
>Mature Secondary Structure 
GVLSGIRVIEFEAIGPGPFGAMLLADMGADVLRIDRPVAPTDLGPQRGPGKRIDVTGRG
CCCCCCEEEEEEECCCCCHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCEEEECCCC
RRSVTIDLKQPEGQQAALELIAKADVVIEGFRPGTMERLGLGPAIALARNPRLIYGRMTG
CEEEEEEECCCCCHHHHHHHHHHHCEEEECCCCCCHHHHCCCCEEEEECCCEEEEEECCC
WGQTGPMADRAGHDLNYIALSGVLSGIGRAGEAPVPPLNLVGDYGGGGMLLALGVVSALL
CCCCCCCCHHCCCCCHHHHHHHHHHHHCCCCCCCCCCHHEEECCCCCHHHHHHHHHHHHH
NVHRGGKGQVVDAAMIEGAAQLGAVIWGLIASGNWRESRGSNLLDGGTPWYDSYCTRDGQ
HHCCCCCCCEEHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHCCCCC
YMSVGAVESRFYAELIEKLGLAGETLPGQHDRAGWPTLRRRFTEVFLTRTRDEWCAIFDG
EEEECHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEEECC
SDACVAPVLTFSEAPDHPQHRARGSFIEVDGVVQPGPAPRFLGTPSEVRHAAPARGQHGG
CCCHHHHHEECCCCCCCHHHHHCCCEEEECCEECCCCCCCCCCCHHHHHHCCCCCCCCCC
AALREWGFDDAAIAKLRAQGLGFVEAQP
HHHHHCCCCHHHHHHHHHHCCCEEECCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9205837; 9278503; 8125343 [H]