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The map label for this gene is yecD [C]

Identifier: 94313927

GI number: 94313927

Start: 1685288

End: 1685857

Strand: Reverse

Name: yecD [C]

Synonym: Rmet_5005

Alternate gene names: 94313927

Gene position: 1685857-1685288 (Counterclockwise)

Preceding gene: 94313928

Following gene: 94313925

Centisome position: 65.34

GC content: 61.93

Gene sequence:

>570_bases
ATGCAGATTCCGGTAATCGAGCCTGCGCGAACCGCGCTGCTGGTCATGCATTACCAGACCGATATTCTGGAGTTGTTCCC
GTCAGTCGCGCCGGTTCTGCTGTCGAATACACGCAGGCTGTGCGATGCCGCACGCGCAGTGGGCGTCGGCGTCTATTTCG
CCAAGATCCATTTCAGCGCGGGGTATCCGGAAGTCAGCCCGTTGAACCGGAACGGGCAGGTCATCAAGCAGCTTGGCCTG
TTCGTCAATGACCAGATCTCGCCGGAACTCGGCCAGCGTGCCGACGAACCGCTGATCCTCGCGCATCGCGCCAGCGTGTT
CTTCGGCACTGACCTGGAGGTGCGGCTTTCCGCCCGGGGGATCGACACGCTGATCATGGTTGGCATCGCGTCGACGGGGG
TGGTGCTGTCGTCGGTGGCGCATGCGAGCGATGCGGACTTCCGCCTGCTCACGGTGAAGGACTGCTGCTACGACCCGGAC
CCGGTCGTCCACGATCATCTATTTGCCACGGCATTCGAATCGCGTACGACGGTGCTTTCGCTCATCGATGCCTTGGCGTT
ACTGGCCTAG

Upstream 100 bases:

>100_bases
GCGAACCACTACGCGAACTAACAAGCGGCGTTCGTCATTGGCCCCGACGGGCACAGCATCGAAGCGGTTTGCCATCAACC
CGAGGCCAGAAAGGATGATC

Downstream 100 bases:

>100_bases
TCTTTCTTGGTCACTGAGGGGCGTGCCTGATGCGGCACGTGCAACTGTCACTTGTCGCGCGTCACGCTCACGCCGGCATC
CACGGTGCCGTACACGGTGA

Product: putative isochorismatase hydrolase

Products: NA

Alternate protein names: Isochorismatase; Pyrimidine Utilization Protein B; Isochorismatase Family Protein; Isochorismatase-Family Hydrolase; Isochorismatase Hydrolase Family Protein; Amidase; Hydrolase Protein; Amidase Related Nicotinamidase; Isochorismatase Family; Isochorismatase Family Hydrolase; N-Carbamoylsarcosine Amidase; Hydrolase; Isochorismate Hydrolase

Number of amino acids: Translated: 189; Mature: 189

Protein sequence:

>189_residues
MQIPVIEPARTALLVMHYQTDILELFPSVAPVLLSNTRRLCDAARAVGVGVYFAKIHFSAGYPEVSPLNRNGQVIKQLGL
FVNDQISPELGQRADEPLILAHRASVFFGTDLEVRLSARGIDTLIMVGIASTGVVLSSVAHASDADFRLLTVKDCCYDPD
PVVHDHLFATAFESRTTVLSLIDALALLA

Sequences:

>Translated_189_residues
MQIPVIEPARTALLVMHYQTDILELFPSVAPVLLSNTRRLCDAARAVGVGVYFAKIHFSAGYPEVSPLNRNGQVIKQLGL
FVNDQISPELGQRADEPLILAHRASVFFGTDLEVRLSARGIDTLIMVGIASTGVVLSSVAHASDADFRLLTVKDCCYDPD
PVVHDHLFATAFESRTTVLSLIDALALLA
>Mature_189_residues
MQIPVIEPARTALLVMHYQTDILELFPSVAPVLLSNTRRLCDAARAVGVGVYFAKIHFSAGYPEVSPLNRNGQVIKQLGL
FVNDQISPELGQRADEPLILAHRASVFFGTDLEVRLSARGIDTLIMVGIASTGVVLSSVAHASDADFRLLTVKDCCYDPD
PVVHDHLFATAFESRTTVLSLIDALALLA

Specific function: Unknown

COG id: COG1335

COG function: function code Q; Amidases related to nicotinamidase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 20483; Mature: 20483

Theoretical pI: Translated: 5.52; Mature: 5.52

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQIPVIEPARTALLVMHYQTDILELFPSVAPVLLSNTRRLCDAARAVGVGVYFAKIHFSA
CCCCCCCCCCCEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEECC
GYPEVSPLNRNGQVIKQLGLFVNDQISPELGQRADEPLILAHRASVFFGTDLEVRLSARG
CCCCCCCCCCCCHHHHHHHHHHCCCCCHHHHCCCCCCEEEEEECEEEECCCEEEEEECCC
IDTLIMVGIASTGVVLSSVAHASDADFRLLTVKDCCYDPDPVVHDHLFATAFESRTTVLS
CCEEEEEHHHHHHHHHHHHHCCCCCCEEEEEEHHCCCCCCCCHHHHHHHHHHHHHHHHHH
LIDALALLA
HHHHHHHCC
>Mature Secondary Structure
MQIPVIEPARTALLVMHYQTDILELFPSVAPVLLSNTRRLCDAARAVGVGVYFAKIHFSA
CCCCCCCCCCCEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEECC
GYPEVSPLNRNGQVIKQLGLFVNDQISPELGQRADEPLILAHRASVFFGTDLEVRLSARG
CCCCCCCCCCCCHHHHHHHHHHCCCCCHHHHCCCCCCEEEEEECEEEECCCEEEEEECCC
IDTLIMVGIASTGVVLSSVAHASDADFRLLTVKDCCYDPDPVVHDHLFATAFESRTTVLS
CCEEEEEHHHHHHHHHHHHHCCCCCCEEEEEEHHCCCCCCCCHHHHHHHHHHHHHHHHHH
LIDALALLA
HHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA