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The map label for this gene is yagI [H]

Identifier: 94313863

GI number: 94313863

Start: 1606069

End: 1606974

Strand: Reverse

Name: yagI [H]

Synonym: Rmet_4941

Alternate gene names: 94313863

Gene position: 1606974-1606069 (Counterclockwise)

Preceding gene: 94313867

Following gene: 94313862

Centisome position: 62.28

GC content: 66.56

Gene sequence:

>906_bases
ATGGAATATCTTACGCCCTCGTCGGAAAGACCGCCAGAGGGCAAGAACCGTTCCGATAGCAGCCAGCCCATGCCAAAGAC
AGCCTATGCCATTCCCGCCGCAGATGCGGCGGACGCCGCGCCAGCGCTCAAGTCCACTTCGCCTGCCGTGGTGCGCGCGG
TCCAGGTGATGGACGCCGTGGCGGCAGCGCACGAGCCGCTGACGCTGGCCGACCTGACCCGGCTGACCGGCGCGCCCAAG
AGTTCACTGCACGGCATGTGCGACACGCTCGTCCAGCTTCAATTGCTCAAGCGCCTGCCGGGCGGAGCGATGGCGCTGGG
GCCGCATGTGATGAGCTGGGCCAATGCCTTCCTGTCGCAGACGCAGATCACGGAAGAATTCCGGGCGCTTTGGGACGAGA
CCGACGCCTTTCACGACGCCACAGTCACGCTGTCGATGCTCGATGGCGCCGAGGTGGTGTACCTGGCCTGCCAGAATGGC
GATCGCCCGTTGGGCGTGACCTTCCGCATCGGCATGCGGCTGCCCGCGCCATATACGGCCACGGGCAAGGCCATGCTCAG
CACCGTACCGGCGGCGGAAGTCAGAAATCTGTTCGATGGGGGGATGCCCGTGCCGCTGACGCGCGCGAGCGTGGCCACGG
TCGCGGCGCTGGTGGATGAGCTCGAACAGGTTCGCGCACTCGGGTACTCGATTGACAACGGTCAGATGCGCGATGGCATG
ACTTGCTTTGGCGCACCCGTGTTCGACGCCACGCGTTCGCGCGCGGTGGGCGCCATCGCGGTCAGCTACCTGACCAGCGA
GATCGATGCGCCGACCGGTAAGCAAATCGGCGGACAAGTCCGTGCGTTGGCCGACCAGCTTTCCGCGCGGCTCGGCGCGG
GTCACCTGTCGCGCGCACTGGGCTGA

Upstream 100 bases:

>100_bases
GGGTCCTTGAGTTGCATGGCGAAATCCTCGGGTTGCATTCGTCGGGTTTGCGGCGTTTAATATCGTTCAATAGATTGAAC
GATATTCGATATGCGGAACG

Downstream 100 bases:

>100_bases
TACAGCGGCAAACGCCGGCAAACGCGGCGCGACGCTTTCGTTTCGTTTGCGCCGAGTCAAAGGCCCACCATCAGCGTATC
GCTAGCATCCGGGAACTCCC

Product: putative IclR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 301; Mature: 301

Protein sequence:

>301_residues
MEYLTPSSERPPEGKNRSDSSQPMPKTAYAIPAADAADAAPALKSTSPAVVRAVQVMDAVAAAHEPLTLADLTRLTGAPK
SSLHGMCDTLVQLQLLKRLPGGAMALGPHVMSWANAFLSQTQITEEFRALWDETDAFHDATVTLSMLDGAEVVYLACQNG
DRPLGVTFRIGMRLPAPYTATGKAMLSTVPAAEVRNLFDGGMPVPLTRASVATVAALVDELEQVRALGYSIDNGQMRDGM
TCFGAPVFDATRSRAVGAIAVSYLTSEIDAPTGKQIGGQVRALADQLSARLGAGHLSRALG

Sequences:

>Translated_301_residues
MEYLTPSSERPPEGKNRSDSSQPMPKTAYAIPAADAADAAPALKSTSPAVVRAVQVMDAVAAAHEPLTLADLTRLTGAPK
SSLHGMCDTLVQLQLLKRLPGGAMALGPHVMSWANAFLSQTQITEEFRALWDETDAFHDATVTLSMLDGAEVVYLACQNG
DRPLGVTFRIGMRLPAPYTATGKAMLSTVPAAEVRNLFDGGMPVPLTRASVATVAALVDELEQVRALGYSIDNGQMRDGM
TCFGAPVFDATRSRAVGAIAVSYLTSEIDAPTGKQIGGQVRALADQLSARLGAGHLSRALG
>Mature_301_residues
MEYLTPSSERPPEGKNRSDSSQPMPKTAYAIPAADAADAAPALKSTSPAVVRAVQVMDAVAAAHEPLTLADLTRLTGAPK
SSLHGMCDTLVQLQLLKRLPGGAMALGPHVMSWANAFLSQTQITEEFRALWDETDAFHDATVTLSMLDGAEVVYLACQNG
DRPLGVTFRIGMRLPAPYTATGKAMLSTVPAAEVRNLFDGGMPVPLTRASVATVAALVDELEQVRALGYSIDNGQMRDGM
TCFGAPVFDATRSRAVGAIAVSYLTSEIDAPTGKQIGGQVRALADQLSARLGAGHLSRALG

Specific function: Unknown

COG id: COG1414

COG function: function code K; Transcriptional regulator

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 iclR-ED (iclR effector binding) domain [H]

Homologues:

Organism=Escherichia coli, GI1786468, Length=222, Percent_Identity=30.1801801801802, Blast_Score=102, Evalue=3e-23,
Organism=Escherichia coli, GI87082359, Length=277, Percent_Identity=23.826714801444, Blast_Score=69, Evalue=5e-13,
Organism=Escherichia coli, GI1788131, Length=152, Percent_Identity=28.2894736842105, Blast_Score=67, Evalue=2e-12,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014757
- InterPro:   IPR005471
- InterPro:   IPR011991 [H]

Pfam domain/function: PF09339 HTH_IclR; PF01614 IclR [H]

EC number: NA

Molecular weight: Translated: 31619; Mature: 31619

Theoretical pI: Translated: 5.66; Mature: 5.66

Prosite motif: PS51077 HTH_ICLR ; PS51078 ICLR_ED

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
4.0 %Met     (Translated Protein)
5.0 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
4.0 %Met     (Mature Protein)
5.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEYLTPSSERPPEGKNRSDSSQPMPKTAYAIPAADAADAAPALKSTSPAVVRAVQVMDAV
CCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCCCCCHHHCHHHCCCCHHHHHHHHHHHHH
AAAHEPLTLADLTRLTGAPKSSLHGMCDTLVQLQLLKRLPGGAMALGPHVMSWANAFLSQ
HHHCCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHH
TQITEEFRALWDETDAFHDATVTLSMLDGAEVVYLACQNGDRPLGVTFRIGMRLPAPYTA
HHHHHHHHHHHHHHCCCCCCEEEEEEECCCEEEEEEECCCCCCEEEEEEECEECCCCCCC
TGKAMLSTVPAAEVRNLFDGGMPVPLTRASVATVAALVDELEQVRALGYSIDNGQMRDGM
CCHHHHHHCCHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCC
TCFGAPVFDATRSRAVGAIAVSYLTSEIDAPTGKQIGGQVRALADQLSARLGAGHLSRAL
EECCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCHHHHHHHC
G
C
>Mature Secondary Structure
MEYLTPSSERPPEGKNRSDSSQPMPKTAYAIPAADAADAAPALKSTSPAVVRAVQVMDAV
CCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCCCCCHHHCHHHCCCCHHHHHHHHHHHHH
AAAHEPLTLADLTRLTGAPKSSLHGMCDTLVQLQLLKRLPGGAMALGPHVMSWANAFLSQ
HHHCCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHH
TQITEEFRALWDETDAFHDATVTLSMLDGAEVVYLACQNGDRPLGVTFRIGMRLPAPYTA
HHHHHHHHHHHHHHCCCCCCEEEEEEECCCEEEEEEECCCCCCEEEEEEECEECCCCCCC
TGKAMLSTVPAAEVRNLFDGGMPVPLTRASVATVAALVDELEQVRALGYSIDNGQMRDGM
CCHHHHHHCCHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCC
TCFGAPVFDATRSRAVGAIAVSYLTSEIDAPTGKQIGGQVRALADQLSARLGAGHLSRAL
EECCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCHHHHHHHC
G
C

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]