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The map label for this gene is allR [H]

Identifier: 94313852

GI number: 94313852

Start: 1593295

End: 1594110

Strand: Reverse

Name: allR [H]

Synonym: Rmet_4930

Alternate gene names: 94313852

Gene position: 1594110-1593295 (Counterclockwise)

Preceding gene: 94313855

Following gene: 94313846

Centisome position: 61.79

GC content: 68.63

Gene sequence:

>816_bases
ATGCCCGCCATACCTGCCGAATCCACCCCCGCACCGCGCCCGCGAGCGCGACGCCAGCGCGTGCAGGCTGCCGAGACCGG
CATGGCCGTGCTCAAGGGGTTGGCCCGTCTGGGCGGCCGCGCCAGCCTGACGGCCATCGCCGCGCAGCTCGACGAAAGTC
CGGCCAAAGTGCACCGATATCTGGTGAGCCTGATGGAGGAAGGGTTTGTGGCGCAGGAGGCAGGCACGCAGCAGTACCAC
CTCGGGATCGAAGCGCTGCAGATCGGGCTGGCCGCGATGCGGCAGGCCGATCCGCTGCGGCTGTCGGAAGCCGCCCTGAT
CCGCCTGCGCGAGCGGCTGGAAGTGACCTGCTTCGTCGCGGTGATGGGAACCCGCGGGGCGACCATCGTACGCATTGAGG
AACCGGGTTTGCCGGTCACGGTGAACGCGCGCGTCGGTTCGGTGATGCCATTGCTGTCTTCGGCCACCGGACGCGTGTTT
CTGGGACTGCTCGATGAATCCAGCGTGGAGGCACTGGCGCAGGAGGAACTGGAGATGCTGCCGCCTGACCGAAGGGCGCT
GCTCGATGCTGTCGATCCGCTCGGCAAGTTGCGCGAGCCCGTTCGCGCACAAGACTGCGCATCGGTGCGTGATACGAACC
TGAAGGGCATCAGCGCCGTGGCGGCGCCGGTGCGCGACTACACGGGCCGTGTATGCGCGGTGCTGACGGCGCTGGGCGCG
ACCGGTGGGTTCGATCCTTCGATCGACGGACCAGTCGGCCGCGCCGTGCGCGAAGAAGCCGCGGCGATCAGCGCGTTGCT
GGGCTACGCCGCGTAA

Upstream 100 bases:

>100_bases
TTGGCCGGATGGTATTTGGCCTGTTTTGCGTAAATCATATACGCATTGCGTAATCATTGAATGAGGGTTAACCGCAGACG
CCATGCCAAGGACACCCGCC

Downstream 100 bases:

>100_bases
TACGCCACGTAATTCGCCTTATCCGGCATGAGTCCGGATCATTCAGGGCGCTTCGGGATATTGACCGCGCGTTGCACGGC
CGGGCGGGCCACGAACGCAC

Product: putative IclR family transcriptional regulator

Products: NA

Alternate protein names: Negative regulator of allantoin and glyoxylate utilization operons [H]

Number of amino acids: Translated: 271; Mature: 270

Protein sequence:

>271_residues
MPAIPAESTPAPRPRARRQRVQAAETGMAVLKGLARLGGRASLTAIAAQLDESPAKVHRYLVSLMEEGFVAQEAGTQQYH
LGIEALQIGLAAMRQADPLRLSEAALIRLRERLEVTCFVAVMGTRGATIVRIEEPGLPVTVNARVGSVMPLLSSATGRVF
LGLLDESSVEALAQEELEMLPPDRRALLDAVDPLGKLREPVRAQDCASVRDTNLKGISAVAAPVRDYTGRVCAVLTALGA
TGGFDPSIDGPVGRAVREEAAAISALLGYAA

Sequences:

>Translated_271_residues
MPAIPAESTPAPRPRARRQRVQAAETGMAVLKGLARLGGRASLTAIAAQLDESPAKVHRYLVSLMEEGFVAQEAGTQQYH
LGIEALQIGLAAMRQADPLRLSEAALIRLRERLEVTCFVAVMGTRGATIVRIEEPGLPVTVNARVGSVMPLLSSATGRVF
LGLLDESSVEALAQEELEMLPPDRRALLDAVDPLGKLREPVRAQDCASVRDTNLKGISAVAAPVRDYTGRVCAVLTALGA
TGGFDPSIDGPVGRAVREEAAAISALLGYAA
>Mature_270_residues
PAIPAESTPAPRPRARRQRVQAAETGMAVLKGLARLGGRASLTAIAAQLDESPAKVHRYLVSLMEEGFVAQEAGTQQYHL
GIEALQIGLAAMRQADPLRLSEAALIRLRERLEVTCFVAVMGTRGATIVRIEEPGLPVTVNARVGSVMPLLSSATGRVFL
GLLDESSVEALAQEELEMLPPDRRALLDAVDPLGKLREPVRAQDCASVRDTNLKGISAVAAPVRDYTGRVCAVLTALGAT
GGFDPSIDGPVGRAVREEAAAISALLGYAA

Specific function: Negative regulator of allantoin and glyoxylate utilization operons. Binds to the gcl promoter and to the allS- allA intergenic region [H]

COG id: COG1414

COG function: function code K; Transcriptional regulator

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 iclR-ED (iclR effector binding) domain [H]

Homologues:

Organism=Escherichia coli, GI1786715, Length=251, Percent_Identity=27.0916334661355, Blast_Score=68, Evalue=7e-13,
Organism=Escherichia coli, GI1786468, Length=256, Percent_Identity=23.828125, Blast_Score=66, Evalue=3e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014757
- InterPro:   IPR005471
- InterPro:   IPR011991 [H]

Pfam domain/function: PF09339 HTH_IclR; PF01614 IclR [H]

EC number: NA

Molecular weight: Translated: 28562; Mature: 28431

Theoretical pI: Translated: 6.55; Mature: 6.55

Prosite motif: PS51077 HTH_ICLR ; PS51078 ICLR_ED

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPAIPAESTPAPRPRARRQRVQAAETGMAVLKGLARLGGRASLTAIAAQLDESPAKVHRY
CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCHHHHHHH
LVSLMEEGFVAQEAGTQQYHLGIEALQIGLAAMRQADPLRLSEAALIRLRERLEVTCFVA
HHHHHHCCCCHHHCCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHEEEEE
VMGTRGATIVRIEEPGLPVTVNARVGSVMPLLSSATGRVFLGLLDESSVEALAQEELEML
EECCCCEEEEEEECCCCCEEECCCHHHHHHHHHCCCCEEEEEECCCHHHHHHHHHHHHHC
PPDRRALLDAVDPLGKLREPVRAQDCASVRDTNLKGISAVAAPVRDYTGRVCAVLTALGA
CCHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHC
TGGFDPSIDGPVGRAVREEAAAISALLGYAA
CCCCCCCCCCHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure 
PAIPAESTPAPRPRARRQRVQAAETGMAVLKGLARLGGRASLTAIAAQLDESPAKVHRY
CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCHHHHHHH
LVSLMEEGFVAQEAGTQQYHLGIEALQIGLAAMRQADPLRLSEAALIRLRERLEVTCFVA
HHHHHHCCCCHHHCCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHEEEEE
VMGTRGATIVRIEEPGLPVTVNARVGSVMPLLSSATGRVFLGLLDESSVEALAQEELEML
EECCCCEEEEEEECCCCCEEECCCHHHHHHHHHCCCCEEEEEECCCHHHHHHHHHHHHHC
PPDRRALLDAVDPLGKLREPVRAQDCASVRDTNLKGISAVAAPVRDYTGRVCAVLTALGA
CCHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHC
TGGFDPSIDGPVGRAVREEAAAISALLGYAA
CCCCCCCCCCHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA