Click here to switch to the map view.

The map label for this gene is bkdR [H]

Identifier: 94313846

GI number: 94313846

Start: 1586235

End: 1586708

Strand: Reverse

Name: bkdR [H]

Synonym: Rmet_4924

Alternate gene names: 94313846

Gene position: 1586708-1586235 (Counterclockwise)

Preceding gene: 94313852

Following gene: 94313844

Centisome position: 61.5

GC content: 61.39

Gene sequence:

>474_bases
ATGCAACATCCGGAACTTGATCGCACGGATCGCCGCTTGCTGGGCGTGCTGCAGGAAAACGGCCGCGCGTCGAATCTGGA
ACTGGCGGAGGCCATCAGCCTGTCGCCCGCGCAGACTTTGCGGCGTCACCGCCGCCTGGAGGAGGGCGGCATCATCAAGC
GCTACGAGGCGCGGCTGGATAGTTCGGCACTTGGCTTCGGCGTCACGGCGTTTATCCATGTGACGATGGAGCGCGGGCAT
ATCCGCGACCTGTCCAAGTTCAAGGGACTGGTGGCGGAACTGGCGCAAATCCAGGAGTGCTTCTCCGTCACCGGAGACAT
CGACTATGTGCTGAAGGTGGTGGCCAAGGACCTGAAGTCCTTGTCTGACTTCCTGCTCGACACCTTGATGCGCATCCCGG
GTGTGAGCGGGGTGAAGTCGAGCGTGTGCCTTGACGAGATCAAGTGCACGAGTGCAATGCCGCTGGAGATCTAG

Upstream 100 bases:

>100_bases
GTTTATATGCCGGCCAGCTAAATAGGATTTCCTTAGAGGCGCAGGAAAACCCTCGGATATGAGATAAGATTTCGTCAAAC
GGCTAGTTTGGGAAACGAAA

Downstream 100 bases:

>100_bases
GCAGGTTTCAGTCCCCAGTCTTCAGCGGCGGGTGTATCTGGGTCCTGCTGCCTTACGGGAGGATGCGCCGCATCGCCGCG
GCGATGTCCTTGGCACTTTC

Product: putative AsnC/lsr family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 157; Mature: 157

Protein sequence:

>157_residues
MQHPELDRTDRRLLGVLQENGRASNLELAEAISLSPAQTLRRHRRLEEGGIIKRYEARLDSSALGFGVTAFIHVTMERGH
IRDLSKFKGLVAELAQIQECFSVTGDIDYVLKVVAKDLKSLSDFLLDTLMRIPGVSGVKSSVCLDEIKCTSAMPLEI

Sequences:

>Translated_157_residues
MQHPELDRTDRRLLGVLQENGRASNLELAEAISLSPAQTLRRHRRLEEGGIIKRYEARLDSSALGFGVTAFIHVTMERGH
IRDLSKFKGLVAELAQIQECFSVTGDIDYVLKVVAKDLKSLSDFLLDTLMRIPGVSGVKSSVCLDEIKCTSAMPLEI
>Mature_157_residues
MQHPELDRTDRRLLGVLQENGRASNLELAEAISLSPAQTLRRHRRLEEGGIIKRYEARLDSSALGFGVTAFIHVTMERGH
IRDLSKFKGLVAELAQIQECFSVTGDIDYVLKVVAKDLKSLSDFLLDTLMRIPGVSGVKSSVCLDEIKCTSAMPLEI

Specific function: Positive regulator of the bkd operon for branched-chain keto acid dehydrogenase complex [H]

COG id: COG1522

COG function: function code K; Transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH asnC-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1787116, Length=149, Percent_Identity=38.9261744966443, Blast_Score=116, Evalue=5e-28,
Organism=Escherichia coli, GI87081742, Length=151, Percent_Identity=32.4503311258278, Blast_Score=97, Evalue=5e-22,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011008
- InterPro:   IPR000485
- InterPro:   IPR019885
- InterPro:   IPR019888
- InterPro:   IPR019887
- InterPro:   IPR011991 [H]

Pfam domain/function: PF01037 AsnC_trans_reg [H]

EC number: NA

Molecular weight: Translated: 17437; Mature: 17437

Theoretical pI: Translated: 6.93; Mature: 6.93

Prosite motif: PS50956 HTH_ASNC_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.9 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
4.5 %Cys+Met (Translated Protein)
1.9 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
4.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQHPELDRTDRRLLGVLQENGRASNLELAEAISLSPAQTLRRHRRLEEGGIIKRYEARLD
CCCCCCCHHHHHHHHHHHHCCCCCCCHHHHHHCCCHHHHHHHHHHHHCCCCHHHHHHHCC
SSALGFGVTAFIHVTMERGHIRDLSKFKGLVAELAQIQECFSVTGDIDYVLKVVAKDLKS
CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH
LSDFLLDTLMRIPGVSGVKSSVCLDEIKCTSAMPLEI
HHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCCCCC
>Mature Secondary Structure
MQHPELDRTDRRLLGVLQENGRASNLELAEAISLSPAQTLRRHRRLEEGGIIKRYEARLD
CCCCCCCHHHHHHHHHHHHCCCCCCCHHHHHHCCCHHHHHHHHHHHHCCCCHHHHHHHCC
SSALGFGVTAFIHVTMERGHIRDLSKFKGLVAELAQIQECFSVTGDIDYVLKVVAKDLKS
CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH
LSDFLLDTLMRIPGVSGVKSSVCLDEIKCTSAMPLEI
HHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8320210 [H]