Click here to switch to the map view.

The map label for this gene is ltrA [H]

Identifier: 94313772

GI number: 94313772

Start: 1507820

End: 1508770

Strand: Reverse

Name: ltrA [H]

Synonym: Rmet_4850

Alternate gene names: 94313772

Gene position: 1508770-1507820 (Counterclockwise)

Preceding gene: 94313779

Following gene: 94313770

Centisome position: 58.48

GC content: 64.04

Gene sequence:

>951_bases
ATGATTGACAATAGCTTGGATCTCAACCTAGTACGGCTGTTCGTGACGATGGTGGAGTCGCGCACGTTGACGGCGGCTGC
CGAGCGCAGTGGCATGACCCGCTCCAATGTGTCCCGCCGTCTGAAGGTGCTCGAACAGCACCTCGGTGCCCAGTTGATGC
GCAGGACAACCCGGCACGTCGAGCTGACGGAGGCCGGGCAACTGCTCTATGCCCACGCACTGCGGATGCTCGACGAACTG
CAATCGGCCAAGACCGCGATCGACAGCCTCGGCACGGTGGTGCGTGGCGACGTGCGTATCCGTCTGCCGACCGGGCTCGG
TCATCTCTACCTGACGCCGCTGCTGCTGGAGTTCGCCCGCATCTACCCACAGATTTCGCTGCGCGTGGTCATCAACGACA
ACATCGGCGACCTGATTTCCGCCGAGGTCGACATGGCGCTGAAGATCACGTCCCAACCGCCAGATGACCACGTGGCGCGA
CGCATCTGCGACGTCGGCTGGTGCCTGTGCGCGACGCCGTCTTTCCTGGACAGCCGTGGCCCGATCCTGAGCGTGGCCGA
CCTGGAGAGCTGCGACATGATCGCGCCCGCATCGCTGGGCCGACGCTTCACGCTCAAGGTGTGGATGGCAGGCACCCCGA
CGACCTTGCGCGTGTCACCACGTATCCAGTCCGGCGACTATCCGTTTCTGCTGGAATCGATGATTGGAGGTCTTGGCGTG
GCACTGCTGCCGCGCTATGCCGTCTGGCGTCAACTCCAGACAGGACAGGTCCGCGAGGTGCTAGCCGAATGCGAGGCGGA
GGGCGTGGGGGACAGCGTTTACATGCTGACGGCATCGAATCGCTACCCGACGCTGGCGACCCGCACGCTGATGGATTTCA
TCCGCGTGCATCTGGAGCGGCAGGCGGAGAGTTGGCGGCGGAGCGGCAATCCGCAGTTGGTGTCGGCGTAG

Upstream 100 bases:

>100_bases
CATTCGGCATGGGCGGTTCGGCATGATTTAGCGCGATGCCTATGCTAGGGTTACGCCTCCGCCGTGACAATCCGTCGTTT
TGTGCCAGTGGTGTTGACTC

Downstream 100 bases:

>100_bases
CCGACATGGTGGGAATGGCCGAGCAGATGTGGTGCTCCCTATCCCCCTATCGCCGCTGCGCCAACCAGATCCCAGCCCCG
ATACAAACAAGCCCCATCCC

Product: putative LysR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 316; Mature: 316

Protein sequence:

>316_residues
MIDNSLDLNLVRLFVTMVESRTLTAAAERSGMTRSNVSRRLKVLEQHLGAQLMRRTTRHVELTEAGQLLYAHALRMLDEL
QSAKTAIDSLGTVVRGDVRIRLPTGLGHLYLTPLLLEFARIYPQISLRVVINDNIGDLISAEVDMALKITSQPPDDHVAR
RICDVGWCLCATPSFLDSRGPILSVADLESCDMIAPASLGRRFTLKVWMAGTPTTLRVSPRIQSGDYPFLLESMIGGLGV
ALLPRYAVWRQLQTGQVREVLAECEAEGVGDSVYMLTASNRYPTLATRTLMDFIRVHLERQAESWRRSGNPQLVSA

Sequences:

>Translated_316_residues
MIDNSLDLNLVRLFVTMVESRTLTAAAERSGMTRSNVSRRLKVLEQHLGAQLMRRTTRHVELTEAGQLLYAHALRMLDEL
QSAKTAIDSLGTVVRGDVRIRLPTGLGHLYLTPLLLEFARIYPQISLRVVINDNIGDLISAEVDMALKITSQPPDDHVAR
RICDVGWCLCATPSFLDSRGPILSVADLESCDMIAPASLGRRFTLKVWMAGTPTTLRVSPRIQSGDYPFLLESMIGGLGV
ALLPRYAVWRQLQTGQVREVLAECEAEGVGDSVYMLTASNRYPTLATRTLMDFIRVHLERQAESWRRSGNPQLVSA
>Mature_316_residues
MIDNSLDLNLVRLFVTMVESRTLTAAAERSGMTRSNVSRRLKVLEQHLGAQLMRRTTRHVELTEAGQLLYAHALRMLDEL
QSAKTAIDSLGTVVRGDVRIRLPTGLGHLYLTPLLLEFARIYPQISLRVVINDNIGDLISAEVDMALKITSQPPDDHVAR
RICDVGWCLCATPSFLDSRGPILSVADLESCDMIAPASLGRRFTLKVWMAGTPTTLRVSPRIQSGDYPFLLESMIGGLGV
ALLPRYAVWRQLQTGQVREVLAECEAEGVGDSVYMLTASNRYPTLATRTLMDFIRVHLERQAESWRRSGNPQLVSA

Specific function: Unknown

COG id: COG0583

COG function: function code K; Transcriptional regulator

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1789440, Length=287, Percent_Identity=26.1324041811847, Blast_Score=115, Evalue=3e-27,
Organism=Escherichia coli, GI145693193, Length=262, Percent_Identity=27.8625954198473, Blast_Score=103, Evalue=2e-23,
Organism=Escherichia coli, GI1786401, Length=294, Percent_Identity=28.9115646258503, Blast_Score=103, Evalue=2e-23,
Organism=Escherichia coli, GI87081978, Length=296, Percent_Identity=27.3648648648649, Blast_Score=102, Evalue=4e-23,
Organism=Escherichia coli, GI1787128, Length=285, Percent_Identity=25.9649122807018, Blast_Score=97, Evalue=1e-21,
Organism=Escherichia coli, GI1787589, Length=265, Percent_Identity=26.0377358490566, Blast_Score=91, Evalue=1e-19,
Organism=Escherichia coli, GI1789639, Length=261, Percent_Identity=26.0536398467433, Blast_Score=85, Evalue=5e-18,
Organism=Escherichia coli, GI1788297, Length=249, Percent_Identity=26.5060240963855, Blast_Score=70, Evalue=2e-13,
Organism=Escherichia coli, GI1787601, Length=155, Percent_Identity=25.8064516129032, Blast_Score=69, Evalue=3e-13,
Organism=Escherichia coli, GI1788706, Length=192, Percent_Identity=27.6041666666667, Blast_Score=69, Evalue=5e-13,
Organism=Escherichia coli, GI145693105, Length=150, Percent_Identity=28.6666666666667, Blast_Score=68, Evalue=8e-13,
Organism=Escherichia coli, GI1788748, Length=255, Percent_Identity=28.2352941176471, Blast_Score=67, Evalue=2e-12,
Organism=Escherichia coli, GI157672245, Length=131, Percent_Identity=29.0076335877863, Blast_Score=66, Evalue=3e-12,
Organism=Escherichia coli, GI1789173, Length=255, Percent_Identity=25.8823529411765, Blast_Score=65, Evalue=8e-12,
Organism=Escherichia coli, GI1790208, Length=145, Percent_Identity=28.2758620689655, Blast_Score=62, Evalue=5e-11,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 35127; Mature: 35127

Theoretical pI: Translated: 8.22; Mature: 8.22

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
3.5 %Met     (Translated Protein)
5.1 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
3.5 %Met     (Mature Protein)
5.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIDNSLDLNLVRLFVTMVESRTLTAAAERSGMTRSNVSRRLKVLEQHLGAQLMRRTTRHV
CCCCCCCHHHHHHHHHHHHCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCE
ELTEAGQLLYAHALRMLDELQSAKTAIDSLGTVVRGDVRIRLPTGLGHLYLTPLLLEFAR
EHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEECCEEEEECCCCCHHHHHHHHHHHHH
IYPQISLRVVINDNIGDLISAEVDMALKITSQPPDDHVARRICDVGWCLCATPSFLDSRG
HCCCEEEEEEEECCCCHHHHHCCCEEEEECCCCCHHHHHHHHHHHHHHHHCCCHHHCCCC
PILSVADLESCDMIAPASLGRRFTLKVWMAGTPTTLRVSPRIQSGDYPFLLESMIGGLGV
CEEEEECCCCCCCCCCHHCCCEEEEEEEECCCCEEEEECCCCCCCCCCHHHHHHHHHHHH
ALLPRYAVWRQLQTGQVREVLAECEAEGVGDSVYMLTASNRYPTLATRTLMDFIRVHLER
HHHHHHHHHHHHCCCHHHHHHHHHHCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHHH
QAESWRRSGNPQLVSA
HHHHHHHCCCCCEECC
>Mature Secondary Structure
MIDNSLDLNLVRLFVTMVESRTLTAAAERSGMTRSNVSRRLKVLEQHLGAQLMRRTTRHV
CCCCCCCHHHHHHHHHHHHCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCE
ELTEAGQLLYAHALRMLDELQSAKTAIDSLGTVVRGDVRIRLPTGLGHLYLTPLLLEFAR
EHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEECCEEEEECCCCCHHHHHHHHHHHHH
IYPQISLRVVINDNIGDLISAEVDMALKITSQPPDDHVARRICDVGWCLCATPSFLDSRG
HCCCEEEEEEEECCCCHHHHHCCCEEEEECCCCCHHHHHHHHHHHHHHHHCCCHHHCCCC
PILSVADLESCDMIAPASLGRRFTLKVWMAGTPTTLRVSPRIQSGDYPFLLESMIGGLGV
CEEEEECCCCCCCCCCHHCCCEEEEEEEECCCCEEEEECCCCCCCCCCHHHHHHHHHHHH
ALLPRYAVWRQLQTGQVREVLAECEAEGVGDSVYMLTASNRYPTLATRTLMDFIRVHLER
HHHHHHHHHHHHCCCHHHHHHHHHHCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHHH
QAESWRRSGNPQLVSA
HHHHHHHCCCCCEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8748036 [H]