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The map label for this gene is tdcF [C]

Identifier: 94313695

GI number: 94313695

Start: 1417948

End: 1418340

Strand: Direct

Name: tdcF [C]

Synonym: Rmet_4773

Alternate gene names: 94313695

Gene position: 1417948-1418340 (Clockwise)

Preceding gene: 94313694

Following gene: 94313696

Centisome position: 54.96

GC content: 63.61

Gene sequence:

>393_bases
ATGGATATCAAACGATTCGGCGTCGAAGGTGGCACCGGCCAGGGCGGCTCGCACATGCCGTTCGCACGCGCCGTGCAAGC
GGACGGCTGGCTCTACGTGTCGGGCCAGGTACCGATGGTCAACGGCGAAGTCATCGACGGCGGCATCGTCGCGCAGAGCC
ACCAGGCCATTCAGAACGTCATGGCCATCCTGGCGGAAGCCGGCTACGGCCCGGAGCATGTGGTTCGCTGCGGCGTCTGG
CTGGACGATGCCCGCGACTTCACGTCGTTCAACAAGATCTTCAAGGAATACTTCGGCGCCAATCCGCCGGCCCGGGCCTG
CGTGCAATCGAGCATGGTGGTCGACTGCAAGGTCGAAGTGGACTGCATCGCTTACAAGAAACCGGCGGCCTGA

Upstream 100 bases:

>100_bases
ACGGCGAGTTGACATGGCGGCAACGCGCCGCCACCGGCGTACGCGCCGGCCGCTTCCTGCCACGCGGCACCCAGCAACAA
CACTGAAAACAGGAGTTTCC

Downstream 100 bases:

>100_bases
ACCCGGCCGGCGTGGACGTGGTCGGCGAGCCAGCCGAGCCGGGGCCACAGCTTCATAGCTTTTTAGCTTTTCCAGCTTTC
TCAACCCGCCGCTACGCGAC

Product: putative endoribonuclease L-PSP

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 130; Mature: 130

Protein sequence:

>130_residues
MDIKRFGVEGGTGQGGSHMPFARAVQADGWLYVSGQVPMVNGEVIDGGIVAQSHQAIQNVMAILAEAGYGPEHVVRCGVW
LDDARDFTSFNKIFKEYFGANPPARACVQSSMVVDCKVEVDCIAYKKPAA

Sequences:

>Translated_130_residues
MDIKRFGVEGGTGQGGSHMPFARAVQADGWLYVSGQVPMVNGEVIDGGIVAQSHQAIQNVMAILAEAGYGPEHVVRCGVW
LDDARDFTSFNKIFKEYFGANPPARACVQSSMVVDCKVEVDCIAYKKPAA
>Mature_130_residues
MDIKRFGVEGGTGQGGSHMPFARAVQADGWLYVSGQVPMVNGEVIDGGIVAQSHQAIQNVMAILAEAGYGPEHVVRCGVW
LDDARDFTSFNKIFKEYFGANPPARACVQSSMVVDCKVEVDCIAYKKPAA

Specific function: Anaerobic degradation of L-threonine to propionate. [C]

COG id: COG0251

COG function: function code J; Putative translation initiation inhibitor, yjgF family

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the RutC family [H]

Homologues:

Organism=Homo sapiens, GI5032215, Length=112, Percent_Identity=35.7142857142857, Blast_Score=82, Evalue=2e-16,
Organism=Escherichia coli, GI87082213, Length=117, Percent_Identity=29.9145299145299, Blast_Score=63, Evalue=6e-12,
Organism=Saccharomyces cerevisiae, GI6322138, Length=109, Percent_Identity=33.0275229357798, Blast_Score=80, Evalue=7e-17,
Organism=Saccharomyces cerevisiae, GI6320899, Length=105, Percent_Identity=26.6666666666667, Blast_Score=67, Evalue=1e-12,
Organism=Drosophila melanogaster, GI19921376, Length=109, Percent_Identity=34.8623853211009, Blast_Score=73, Evalue=5e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013813
- InterPro:   IPR006175
- InterPro:   IPR006056
- InterPro:   IPR019897 [H]

Pfam domain/function: PF01042 Ribonuc_L-PSP [H]

EC number: NA

Molecular weight: Translated: 13952; Mature: 13952

Theoretical pI: Translated: 5.61; Mature: 5.61

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

3.1 %Cys     (Translated Protein)
3.8 %Met     (Translated Protein)
6.9 %Cys+Met (Translated Protein)
3.1 %Cys     (Mature Protein)
3.8 %Met     (Mature Protein)
6.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDIKRFGVEGGTGQGGSHMPFARAVQADGWLYVSGQVPMVNGEVIDGGIVAQSHQAIQNV
CCCCCCCCCCCCCCCCCCCCHHHEECCCCEEEECCCCEEECCEEECCCEEEHHHHHHHHH
MAILAEAGYGPEHVVRCGVWLDDARDFTSFNKIFKEYFGANPPARACVQSSMVVDCKVEV
HHHHHHCCCCHHHEEEECCEECCCHHHHHHHHHHHHHHCCCCCHHHHHHCCEEEEEEEEE
DCIAYKKPAA
EEEECCCCCC
>Mature Secondary Structure
MDIKRFGVEGGTGQGGSHMPFARAVQADGWLYVSGQVPMVNGEVIDGGIVAQSHQAIQNV
CCCCCCCCCCCCCCCCCCCCHHHEECCCCEEEECCCCEEECCEEECCCEEEHHHHHHHHH
MAILAEAGYGPEHVVRCGVWLDDARDFTSFNKIFKEYFGANPPARACVQSSMVVDCKVEV
HHHHHHCCCCHHHEEEECCEECCCHHHHHHHHHHHHHHCCCCCHHHHHHCCEEEEEEEEE
DCIAYKKPAA
EEEECCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9679194 [H]