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The map label for this gene is yddU [C]

Identifier: 94313688

GI number: 94313688

Start: 1410691

End: 1412028

Strand: Direct

Name: yddU [C]

Synonym: Rmet_4766

Alternate gene names: 94313688

Gene position: 1410691-1412028 (Clockwise)

Preceding gene: 94313687

Following gene: 94313689

Centisome position: 54.68

GC content: 64.05

Gene sequence:

>1338_bases
ATGGACTCTGAAGCCAAAGACGCGCATTGGGGGGATGACCGCGCCCGCGAGCCTGCGCTGTCCGAGTCCCAGCCCGCCGC
CTTTCTGGCAGCGCTTGCCGGGCATCGCGCGGAGATTGGCACCGCACATCCGCTGGCGATCGTGATCGTCCGCCTGGACC
GTTTTCAGTTTGCCTGCGAAACGATCGGCAGCCGGCGCACCCGCCTGCTGCGGGCTGAGGTCAAATCCCGGATAGCCGGT
GTCGGCGTCATGCCCGCCGTGATGCACTGGTTGAGTCCGGCCGACCTTGGCATCGCCTGCCTTCTGCCGGCAACCGCCGA
AGAGATGGCCGAACTGAGCCAGAGCATTGCCACAGCGCTGCGGCTCCCCTACTCCGTCGACGGATTCGAGCTATTCCTCT
CGTGCAGCATCGGCACCGCCATCGACAGCCCGGAAAGCGCCACCGAACGCAATCTGCAGCAGGCGTTCGATGCCATGCTG
CAGATCAACAGGCGTGGCGGTGGTGGTATTGCCAATGCCAGCCAGCCTGTTAGCCCGCGCATGGTGACCCTGCTGGCGGC
ACTGCCCGAGGCCGTTTCACGCGGCGAATTCAGCCTGCAGTTACAGCCTCGTGCGTTATTCGACACAGCGGAGATTGCCG
CCTATACGGTGCGCTTACGCTGGCATCACCCAGTGCTTGGGCGTATTTCGCCGCAGGACTTCCTGCCAGCCGTCGAAGCG
CTCGGCATGATGCGCGAAGTCGGCCACTGGCTGGTGCAACAGTTGCTGCAATTGATCCAGGAGTCCAAACATGTGGCAAA
GGTCCAGTTCACGCTGCTGGCGTCCAGCCCGCAGCTCCTGGCCGACGATGCAATCACCATGCTGCAGCGCGCTGTAGAAA
CATCCGGTATCTCCCCGGACCGTCTCTGCGTGGAGGTGCCAGTCCAGTGCATCAGCGCAGTTGCCGATGCCACGCAGAAA
GCCGCACGACTACATGACTGCGGCATCCAGATTTCCCTTTCGGATTTCACAGATGACCAGGTCAGCCGGCACGCGCTGGC
ATTGGTCGCACCGGACATGGTGATGCTCGATGCACGGCATCTGGGCAGTTCGGCGCAGGCGCGCGATGCTGCCACGTTGT
TGCGCGCGGCATGTGTGTTCGCCAGGTCGCGGGGCGTGGCGGTCCATGCCCGGGGTGTGGAAACTCGCGCCCAGCTTGAG
GCCGTACGCGATTGGGGTTGCGATGGCGTGCAAGGCTATCTGTTGGCGCAGCCCTTTCCCGCGCAATGGCTGGTGCAGAC
CCACGCAGCCGTGGCCGAGCGCGCTCGCCAGCTCCTGCGGCCAACCAATTTGGTCTAA

Upstream 100 bases:

>100_bases
ACCGGGGCGCGCCGGGCGCGAGTACATCAGGACGGAACGCAGTCGCGGTATCGCCGGCGGCTATTGCCTAACATGAACTT
GCTGCCAGCAAACGTATTCG

Downstream 100 bases:

>100_bases
CCGGCATTGAGGTGAGGCGCAACGCGCGGATCACATCAATTGCAGTACAGATGGACTTACACTTTGGCACATATCCTGCA
TCGACAAGTATCGGCGCGGC

Product: putative diguanylate cyclase/phosphodiesterase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 445; Mature: 445

Protein sequence:

>445_residues
MDSEAKDAHWGDDRAREPALSESQPAAFLAALAGHRAEIGTAHPLAIVIVRLDRFQFACETIGSRRTRLLRAEVKSRIAG
VGVMPAVMHWLSPADLGIACLLPATAEEMAELSQSIATALRLPYSVDGFELFLSCSIGTAIDSPESATERNLQQAFDAML
QINRRGGGGIANASQPVSPRMVTLLAALPEAVSRGEFSLQLQPRALFDTAEIAAYTVRLRWHHPVLGRISPQDFLPAVEA
LGMMREVGHWLVQQLLQLIQESKHVAKVQFTLLASSPQLLADDAITMLQRAVETSGISPDRLCVEVPVQCISAVADATQK
AARLHDCGIQISLSDFTDDQVSRHALALVAPDMVMLDARHLGSSAQARDAATLLRAACVFARSRGVAVHARGVETRAQLE
AVRDWGCDGVQGYLLAQPFPAQWLVQTHAAVAERARQLLRPTNLV

Sequences:

>Translated_445_residues
MDSEAKDAHWGDDRAREPALSESQPAAFLAALAGHRAEIGTAHPLAIVIVRLDRFQFACETIGSRRTRLLRAEVKSRIAG
VGVMPAVMHWLSPADLGIACLLPATAEEMAELSQSIATALRLPYSVDGFELFLSCSIGTAIDSPESATERNLQQAFDAML
QINRRGGGGIANASQPVSPRMVTLLAALPEAVSRGEFSLQLQPRALFDTAEIAAYTVRLRWHHPVLGRISPQDFLPAVEA
LGMMREVGHWLVQQLLQLIQESKHVAKVQFTLLASSPQLLADDAITMLQRAVETSGISPDRLCVEVPVQCISAVADATQK
AARLHDCGIQISLSDFTDDQVSRHALALVAPDMVMLDARHLGSSAQARDAATLLRAACVFARSRGVAVHARGVETRAQLE
AVRDWGCDGVQGYLLAQPFPAQWLVQTHAAVAERARQLLRPTNLV
>Mature_445_residues
MDSEAKDAHWGDDRAREPALSESQPAAFLAALAGHRAEIGTAHPLAIVIVRLDRFQFACETIGSRRTRLLRAEVKSRIAG
VGVMPAVMHWLSPADLGIACLLPATAEEMAELSQSIATALRLPYSVDGFELFLSCSIGTAIDSPESATERNLQQAFDAML
QINRRGGGGIANASQPVSPRMVTLLAALPEAVSRGEFSLQLQPRALFDTAEIAAYTVRLRWHHPVLGRISPQDFLPAVEA
LGMMREVGHWLVQQLLQLIQESKHVAKVQFTLLASSPQLLADDAITMLQRAVETSGISPDRLCVEVPVQCISAVADATQK
AARLHDCGIQISLSDFTDDQVSRHALALVAPDMVMLDARHLGSSAQARDAATLLRAACVFARSRGVAVHARGVETRAQLE
AVRDWGCDGVQGYLLAQPFPAQWLVQTHAAVAERARQLLRPTNLV

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 PAS (PER-ARNT-SIM) domains [H]

Homologues:

Organism=Escherichia coli, GI87081921, Length=338, Percent_Identity=25.4437869822485, Blast_Score=110, Evalue=1e-25,
Organism=Escherichia coli, GI1787541, Length=317, Percent_Identity=24.6056782334385, Blast_Score=87, Evalue=2e-18,
Organism=Escherichia coli, GI1788502, Length=249, Percent_Identity=23.6947791164659, Blast_Score=73, Evalue=5e-14,
Organism=Escherichia coli, GI1786507, Length=244, Percent_Identity=24.5901639344262, Blast_Score=70, Evalue=2e-13,
Organism=Escherichia coli, GI1787055, Length=238, Percent_Identity=25.6302521008403, Blast_Score=69, Evalue=8e-13,
Organism=Escherichia coli, GI1788849, Length=254, Percent_Identity=24.0157480314961, Blast_Score=64, Evalue=2e-11,
Organism=Escherichia coli, GI226510982, Length=333, Percent_Identity=23.1231231231231, Blast_Score=62, Evalue=5e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001054
- InterPro:   IPR000160
- InterPro:   IPR001633
- InterPro:   IPR001610
- InterPro:   IPR000014
- InterPro:   IPR000700
- InterPro:   IPR013656
- InterPro:   IPR013655 [H]

Pfam domain/function: PF00563 EAL; PF00990 GGDEF; PF08447 PAS_3; PF08448 PAS_4 [H]

EC number: NA

Molecular weight: Translated: 48148; Mature: 48148

Theoretical pI: Translated: 6.57; Mature: 6.57

Prosite motif: PS50883 EAL

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.8 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
4.3 %Cys+Met (Translated Protein)
1.8 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
4.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDSEAKDAHWGDDRAREPALSESQPAAFLAALAGHRAEIGTAHPLAIVIVRLDRFQFACE
CCCCCCCCCCCCCHHCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCEEEEEHHHHHHHHHH
TIGSRRTRLLRAEVKSRIAGVGVMPAVMHWLSPADLGIACLLPATAEEMAELSQSIATAL
HHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCCCCCEEEECCCCHHHHHHHHHHHHHHH
RLPYSVDGFELFLSCSIGTAIDSPESATERNLQQAFDAMLQINRRGGGGIANASQPVSPR
HCCCCCCCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHH
MVTLLAALPEAVSRGEFSLQLQPRALFDTAEIAAYTVRLRWHHPVLGRISPQDFLPAVEA
HHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHEEEEEEEEECCCCCCCCCHHHHHHHHHH
LGMMREVGHWLVQQLLQLIQESKHVAKVQFTLLASSPQLLADDAITMLQRAVETSGISPD
HHHHHHHHHHHHHHHHHHHHHCCHHEEEEEEEEECCCCHHHHHHHHHHHHHHHHCCCCCC
RLCVEVPVQCISAVADATQKAARLHDCGIQISLSDFTDDQVSRHALALVAPDMVMLDARH
HHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEECCCCCHHHHHHHHHHHCCCHHHHHHHH
LGSSAQARDAATLLRAACVFARSRGVAVHARGVETRAQLEAVRDWGCDGVQGYLLAQPFP
CCCCCHHHHHHHHHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHCCCCCCCCEEECCCCC
AQWLVQTHAAVAERARQLLRPTNLV
HHHHHHHHHHHHHHHHHHHCCCCCC
>Mature Secondary Structure
MDSEAKDAHWGDDRAREPALSESQPAAFLAALAGHRAEIGTAHPLAIVIVRLDRFQFACE
CCCCCCCCCCCCCHHCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCEEEEEHHHHHHHHHH
TIGSRRTRLLRAEVKSRIAGVGVMPAVMHWLSPADLGIACLLPATAEEMAELSQSIATAL
HHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCCCCCEEEECCCCHHHHHHHHHHHHHHH
RLPYSVDGFELFLSCSIGTAIDSPESATERNLQQAFDAMLQINRRGGGGIANASQPVSPR
HCCCCCCCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHH
MVTLLAALPEAVSRGEFSLQLQPRALFDTAEIAAYTVRLRWHHPVLGRISPQDFLPAVEA
HHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHEEEEEEEEECCCCCCCCCHHHHHHHHHH
LGMMREVGHWLVQQLLQLIQESKHVAKVQFTLLASSPQLLADDAITMLQRAVETSGISPD
HHHHHHHHHHHHHHHHHHHHHCCHHEEEEEEEEECCCCHHHHHHHHHHHHHHHHCCCCCC
RLCVEVPVQCISAVADATQKAARLHDCGIQISLSDFTDDQVSRHALALVAPDMVMLDARH
HHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEECCCCCHHHHHHHHHHHCCCHHHHHHHH
LGSSAQARDAATLLRAACVFARSRGVAVHARGVETRAQLEAVRDWGCDGVQGYLLAQPFP
CCCCCHHHHHHHHHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHCCCCCCCCEEECCCCC
AQWLVQTHAAVAERARQLLRPTNLV
HHHHHHHHHHHHHHHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9163424 [H]