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The map label for this gene is vdlD [H]

Identifier: 94313670

GI number: 94313670

Start: 1392494

End: 1393003

Strand: Reverse

Name: vdlD [H]

Synonym: Rmet_4748

Alternate gene names: 94313670

Gene position: 1393003-1392494 (Counterclockwise)

Preceding gene: 94313671

Following gene: 94313669

Centisome position: 53.99

GC content: 61.18

Gene sequence:

>510_bases
ATGCCCGAATCTGGATTTCCTGCGATGAACGATCTGTCCCACCAGCTTTCCATGACCGTGCTGATGACGCCGGACATGGC
CAATTTCTCCGGCAATGTCCACGGCGGCACGATCCTGAAATACCTCGATATGGTGGCCTACGCCTGCGCCAGCCGCTATG
CCGGCCGCTACGTGGTTACGCTGTCGGTGGACCAGGTGATGTTCCGCCAGCCGATCCATGTGGGCGAACTTGTGACGTTC
CTGGCTGCCGTCAACTTCACGGGCCGCAGCTCGATGGAGATCGGTATCAAGGTGGTGACCGAGAATATCCGCAGCAAGGT
CGTGCGCCATACCAATAGCTGCTACTTCACGATGGTCGCCGTTGACGACAACGGTGCGCCGGCCGAAGTGCCGCCGCTGC
AGCCGCGTGACGAAGTGGAGCGCCAGCGTTTCGAAGCCGCCAAGCAGCGACGCGCGCTGCGCCAGGAAATGGAACGTCGC
CACGACGAGATCAAAGGCTCCACACCGTGA

Upstream 100 bases:

>100_bases
GCCTGAGGGGCCGCTTTTCTTTTGTCGGAAGTTTCTTGCATGGCTGGGGTGGACCGGGCTCCCATTCACGCACGCGGCGA
GTTACACTGCCGGCGCCTGA

Downstream 100 bases:

>100_bases
CCCCGACATGACCAGACTTCGTATCGGCATGGCCGCAGGCCTTGCCATCGGTATGCTTGCCTGCGCGGCACAGGCCGAAG
AGATCGGCAGTGTTTCCACC

Product: Thioesterase superfamily

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 169; Mature: 168

Protein sequence:

>169_residues
MPESGFPAMNDLSHQLSMTVLMTPDMANFSGNVHGGTILKYLDMVAYACASRYAGRYVVTLSVDQVMFRQPIHVGELVTF
LAAVNFTGRSSMEIGIKVVTENIRSKVVRHTNSCYFTMVAVDDNGAPAEVPPLQPRDEVERQRFEAAKQRRALRQEMERR
HDEIKGSTP

Sequences:

>Translated_169_residues
MPESGFPAMNDLSHQLSMTVLMTPDMANFSGNVHGGTILKYLDMVAYACASRYAGRYVVTLSVDQVMFRQPIHVGELVTF
LAAVNFTGRSSMEIGIKVVTENIRSKVVRHTNSCYFTMVAVDDNGAPAEVPPLQPRDEVERQRFEAAKQRRALRQEMERR
HDEIKGSTP
>Mature_168_residues
PESGFPAMNDLSHQLSMTVLMTPDMANFSGNVHGGTILKYLDMVAYACASRYAGRYVVTLSVDQVMFRQPIHVGELVTFL
AAVNFTGRSSMEIGIKVVTENIRSKVVRHTNSCYFTMVAVDDNGAPAEVPPLQPRDEVERQRFEAAKQRRALRQEMERRH
DEIKGSTP

Specific function: Unknown

COG id: COG1607

COG function: function code I; Acyl-CoA hydrolase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the acyl coenzyme A hydrolase family [H]

Homologues:

Organism=Homo sapiens, GI32528286, Length=156, Percent_Identity=34.6153846153846, Blast_Score=79, Evalue=2e-15,
Organism=Homo sapiens, GI75709208, Length=156, Percent_Identity=34.6153846153846, Blast_Score=79, Evalue=3e-15,
Organism=Homo sapiens, GI32528284, Length=156, Percent_Identity=34.6153846153846, Blast_Score=79, Evalue=3e-15,
Organism=Homo sapiens, GI32528282, Length=147, Percent_Identity=34.6938775510204, Blast_Score=78, Evalue=3e-15,
Organism=Homo sapiens, GI22165355, Length=140, Percent_Identity=32.8571428571429, Blast_Score=74, Evalue=5e-14,
Organism=Homo sapiens, GI22165400, Length=140, Percent_Identity=32.8571428571429, Blast_Score=74, Evalue=5e-14,
Organism=Homo sapiens, GI18640736, Length=148, Percent_Identity=32.4324324324324, Blast_Score=73, Evalue=1e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006683 [H]

Pfam domain/function: PF03061 4HBT [H]

EC number: 3.1.2.- [C]

Molecular weight: Translated: 18936; Mature: 18805

Theoretical pI: Translated: 7.63; Mature: 7.63

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
5.9 %Met     (Translated Protein)
7.1 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
5.4 %Met     (Mature Protein)
6.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPESGFPAMNDLSHQLSMTVLMTPDMANFSGNVHGGTILKYLDMVAYACASRYAGRYVVT
CCCCCCCCHHHHHHHHEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEE
LSVDQVMFRQPIHVGELVTFLAAVNFTGRSSMEIGIKVVTENIRSKVVRHTNSCYFTMVA
EEHHHHHHHCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCCCCEEEEEEE
VDDNGAPAEVPPLQPRDEVERQRFEAAKQRRALRQEMERRHDEIKGSTP
EECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
>Mature Secondary Structure 
PESGFPAMNDLSHQLSMTVLMTPDMANFSGNVHGGTILKYLDMVAYACASRYAGRYVVT
CCCCCCCHHHHHHHHEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEE
LSVDQVMFRQPIHVGELVTFLAAVNFTGRSSMEIGIKVVTENIRSKVVRHTNSCYFTMVA
EEHHHHHHHCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCCCCEEEEEEE
VDDNGAPAEVPPLQPRDEVERQRFEAAKQRRALRQEMERRHDEIKGSTP
EECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: Hydrolase; Acting on ester bonds; Thiolester hydrolases [C]

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9923682 [H]