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The map label for this gene is ygaE [C]

Identifier: 94313537

GI number: 94313537

Start: 1240916

End: 1241680

Strand: Direct

Name: ygaE [C]

Synonym: Rmet_4615

Alternate gene names: 94313537

Gene position: 1240916-1241680 (Clockwise)

Preceding gene: 94313533

Following gene: 94313538

Centisome position: 48.1

GC content: 65.49

Gene sequence:

>765_bases
ATGATTTCATCCCATGTCAATGGATGGGGCGGCTCTCCTGCCGGTATTGCCACAACCTTTCCGCTAGAATCGCGCCCTGT
GCCACATCCGACCTTTCCATCCCACGCCATGTCGATCGATTCGCCCGCCACCGCAGGCCCAGCAAGCCGCAGCGCATCGG
ACTCGGTGTTCTTCGGGATCATGAATGGCCTGGAACTCGGCACGTTTGTGCCTGGCCAGCGGCTGGTGGAAACCGATCTT
GTCGAGCAATTCGGCGTGGGGCGGAATTCCGTGCGCGAAGCGCTGCAGCGGCTGGCTGCGGAGGGCATTGTCGACCTGCC
GCGCCATCGCGGCGCGATCATCCGGCGCCTGAGCCTGCAGGAGACACTCGACGTGCTCGATGTGGCGGAGCGCATGACTG
GCCTGCTCGCGCGCGCCGCCACGCGGGGAAGCAGTGACCGGACACTGGCGCAGGCGCTGCGCGCATCGGTGCAGGCGCTC
GTGGCCGCCGAAAAGGCCCACGACGGCGAAGCGTTCTCCACCGCGAGGCGTCATTTCTATCGCACGCTGCTGGATATGGG
CGATAACCGCGAATTGCGCCGGCTCTTTCCCACTATCCAGATGCCGATCGTCCATGCGCAGCATCGGCTGGCGTCATTGC
GGCAGATGCGGCTGGATGACTACAAACGTATCGCCACGGCCGTGCAGGCGGGCGAACCCGACGCCGCCGAAGCTGCTGGC
GCCGCGCACGTGCAGAACGTGCGTGGCGCGATCCTGGGTCAGTAG

Upstream 100 bases:

>100_bases
TCGAGGCGCCGGTGACCAGCGCCCGCTTGCCGTCCAGTCCGAGCAGTGTCTCCTTCATCCCCTGTCTCCTTCCGATTGCA
TAGTAGGGGCAAATTGTAGG

Downstream 100 bases:

>100_bases
CACTGGCGGCTCCGGACGATTCGCCGAATGAAGAAGTCGCAGATCGACCGACTGGACTGGGACCGCAGATCACGCCGTCG
GTGGCGGTGAACTCAGCCCG

Product: GntR family transcriptional regulator

Products: NA

Alternate protein names: Transcriptional Regulator GntR Family; GntR-Family Transcriptional Regulator; Transcriptional Regulator Gntr Family; Transcriptional Regulator GntR Family Protein; Transcriptional Regulator; Regulatory Protein; Regulatory Protein GntR; Transcriptional Regulator Protein GntR Family

Number of amino acids: Translated: 254; Mature: 254

Protein sequence:

>254_residues
MISSHVNGWGGSPAGIATTFPLESRPVPHPTFPSHAMSIDSPATAGPASRSASDSVFFGIMNGLELGTFVPGQRLVETDL
VEQFGVGRNSVREALQRLAAEGIVDLPRHRGAIIRRLSLQETLDVLDVAERMTGLLARAATRGSSDRTLAQALRASVQAL
VAAEKAHDGEAFSTARRHFYRTLLDMGDNRELRRLFPTIQMPIVHAQHRLASLRQMRLDDYKRIATAVQAGEPDAAEAAG
AAHVQNVRGAILGQ

Sequences:

>Translated_254_residues
MISSHVNGWGGSPAGIATTFPLESRPVPHPTFPSHAMSIDSPATAGPASRSASDSVFFGIMNGLELGTFVPGQRLVETDL
VEQFGVGRNSVREALQRLAAEGIVDLPRHRGAIIRRLSLQETLDVLDVAERMTGLLARAATRGSSDRTLAQALRASVQAL
VAAEKAHDGEAFSTARRHFYRTLLDMGDNRELRRLFPTIQMPIVHAQHRLASLRQMRLDDYKRIATAVQAGEPDAAEAAG
AAHVQNVRGAILGQ
>Mature_254_residues
MISSHVNGWGGSPAGIATTFPLESRPVPHPTFPSHAMSIDSPATAGPASRSASDSVFFGIMNGLELGTFVPGQRLVETDL
VEQFGVGRNSVREALQRLAAEGIVDLPRHRGAIIRRLSLQETLDVLDVAERMTGLLARAATRGSSDRTLAQALRASVQAL
VAAEKAHDGEAFSTARRHFYRTLLDMGDNRELRRLFPTIQMPIVHAQHRLASLRQMRLDDYKRIATAVQAGEPDAAEAAG
AAHVQNVRGAILGQ

Specific function: Unknown

COG id: COG1802

COG function: function code K; Transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 27369; Mature: 27369

Theoretical pI: Translated: 9.90; Mature: 9.90

Prosite motif: PS50949 HTH_GNTR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MISSHVNGWGGSPAGIATTFPLESRPVPHPTFPSHAMSIDSPATAGPASRSASDSVFFGI
CCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCHHCCCCCCCCCCCCCCCCCCHHHHHH
MNGLELGTFVPGQRLVETDLVEQFGVGRNSVREALQRLAAEGIVDLPRHRGAIIRRLSLQ
HHCCHHCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCHHCHHHHHHHHHHHHHH
ETLDVLDVAERMTGLLARAATRGSSDRTLAQALRASVQALVAAEKAHDGEAFSTARRHFY
HHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
RTLLDMGDNRELRRLFPTIQMPIVHAQHRLASLRQMRLDDYKRIATAVQAGEPDAAEAAG
HHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHH
AAHVQNVRGAILGQ
HHHHHHHHHHHCCC
>Mature Secondary Structure
MISSHVNGWGGSPAGIATTFPLESRPVPHPTFPSHAMSIDSPATAGPASRSASDSVFFGI
CCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCHHCCCCCCCCCCCCCCCCCCHHHHHH
MNGLELGTFVPGQRLVETDLVEQFGVGRNSVREALQRLAAEGIVDLPRHRGAIIRRLSLQ
HHCCHHCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCHHCHHHHHHHHHHHHHH
ETLDVLDVAERMTGLLARAATRGSSDRTLAQALRASVQALVAAEKAHDGEAFSTARRHFY
HHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
RTLLDMGDNRELRRLFPTIQMPIVHAQHRLASLRQMRLDDYKRIATAVQAGEPDAAEAAG
HHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHH
AAHVQNVRGAILGQ
HHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA