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The map label for this gene is arnD [H]

Identifier: 94313515

GI number: 94313515

Start: 1212124

End: 1213014

Strand: Direct

Name: arnD [H]

Synonym: Rmet_4593

Alternate gene names: 94313515

Gene position: 1212124-1213014 (Clockwise)

Preceding gene: 94313514

Following gene: 94313517

Centisome position: 46.98

GC content: 65.88

Gene sequence:

>891_bases
ATGGCACGCATTGCGCTCAAGGTAGACGTGGACACGCTGCGCGGCACGCGCGAAGGCGTGCCCGCGCTGCTGTCCATGCT
GTCCGCCGCCGAGGCGGAAGCCACGTTCCTGTTCAGCCTCGGCCCGGATCACACGGGCTGGGCGCTGCGCCGGGTGTTCC
GTCCCGGTTTCCTGAAGAAGGTCTCGCGGACTTCCGTGGTGTCGAACTACGGCCTGCGCACGCTGATGTACGGCGTGCTG
CTGCCGGGGCCCGACATCGGCCGCAAGGGCGCTGCCGAAATGCGTGCGGCCGCCGCAGCGGGCCACGAGTGCGGCATCCA
CACCTGGGACCACGTCTACTGGCAGGACAACGTGCGCGAGCGCGATGCGGCCTGGACGCGCCGACAGATGCAGCAATCGT
TCGAGCGCTTCACCGATATCTTCGGTGCCGCCCCGACGACGCATGGCGCGGCCGGCTGGCAGATGAACAACGAGGCGTTT
CGCCAGATCGACGACTGGGGCATGGTCTACGCGTCCGATGGCCGCGGGACGGCGCCCTACATTCCGACGGTCGATGGCAA
GGCCTGCCGCCACGTGCAGATGCCGACCACGCTGCCGACGCTCGACGAGCTGATCGGTGTGGACGACCTGACCGAAGACA
ACGTGCACAAAGCCGTGCTCAAGCTGACCGAGGGCGACGGCGACCACATTTTCACGCTCCATACAGAGCTGGAAGGCGGA
AAGCTGGCGCCGGTATTCAAGCGACTGCTGTCAGGCTGGCGCGCGCAAGGTCACCAGCTTGTGTCGATGGCAACGTATTA
CCAGCACATCGATCGCAGCGACCTGCCGCAAATGCCCGTTACCTGGGGTGAAATCCCGGGCCGAAGCGGCGAACTGATTA
TTCAGCCCTGA

Upstream 100 bases:

>100_bases
GAGGTGTCGATGGAGCAGGCGCTGCGCCGCATCTTCGAGGCGTATCGCGACAAGGTCGTCGAGGCACGCACGCTGGTGGA
CGCGGACAACTGATCGCTTC

Downstream 100 bases:

>100_bases
TTTCTCGCGCTCCCCATGCAGGGGAGCGCGATCCTCGACTCAGCCACAGGCCGTCAAACGGCCTTGCGCGTCAGCCTCAG
CCCGTTGAATACCACCAGCA

Product: polysaccharide deacetylase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 296; Mature: 295

Protein sequence:

>296_residues
MARIALKVDVDTLRGTREGVPALLSMLSAAEAEATFLFSLGPDHTGWALRRVFRPGFLKKVSRTSVVSNYGLRTLMYGVL
LPGPDIGRKGAAEMRAAAAAGHECGIHTWDHVYWQDNVRERDAAWTRRQMQQSFERFTDIFGAAPTTHGAAGWQMNNEAF
RQIDDWGMVYASDGRGTAPYIPTVDGKACRHVQMPTTLPTLDELIGVDDLTEDNVHKAVLKLTEGDGDHIFTLHTELEGG
KLAPVFKRLLSGWRAQGHQLVSMATYYQHIDRSDLPQMPVTWGEIPGRSGELIIQP

Sequences:

>Translated_296_residues
MARIALKVDVDTLRGTREGVPALLSMLSAAEAEATFLFSLGPDHTGWALRRVFRPGFLKKVSRTSVVSNYGLRTLMYGVL
LPGPDIGRKGAAEMRAAAAAGHECGIHTWDHVYWQDNVRERDAAWTRRQMQQSFERFTDIFGAAPTTHGAAGWQMNNEAF
RQIDDWGMVYASDGRGTAPYIPTVDGKACRHVQMPTTLPTLDELIGVDDLTEDNVHKAVLKLTEGDGDHIFTLHTELEGG
KLAPVFKRLLSGWRAQGHQLVSMATYYQHIDRSDLPQMPVTWGEIPGRSGELIIQP
>Mature_295_residues
ARIALKVDVDTLRGTREGVPALLSMLSAAEAEATFLFSLGPDHTGWALRRVFRPGFLKKVSRTSVVSNYGLRTLMYGVLL
PGPDIGRKGAAEMRAAAAAGHECGIHTWDHVYWQDNVRERDAAWTRRQMQQSFERFTDIFGAAPTTHGAAGWQMNNEAFR
QIDDWGMVYASDGRGTAPYIPTVDGKACRHVQMPTTLPTLDELIGVDDLTEDNVHKAVLKLTEGDGDHIFTLHTELEGGK
LAPVFKRLLSGWRAQGHQLVSMATYYQHIDRSDLPQMPVTWGEIPGRSGELIIQP

Specific function: Catalyzes the deformylation of 4-deoxy-4-formamido-L- arabinose-phosphoundecaprenol to 4-amino-4-deoxy-L-arabinose- phosphoundecaprenol. The modified arabinose is attached to lipid A and is required for resistance to polymyxin and cationic antimicrobial p

COG id: COG0726

COG function: function code G; Predicted xylanase/chitin deacetylase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the polysaccharide deacetylase family. ArnD deformylase subfamily [H]

Homologues:

Organism=Escherichia coli, GI1788590, Length=299, Percent_Identity=35.4515050167224, Blast_Score=169, Evalue=2e-43,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011330
- InterPro:   IPR002509 [H]

Pfam domain/function: PF01522 Polysacc_deac_1 [H]

EC number: NA

Molecular weight: Translated: 32824; Mature: 32692

Theoretical pI: Translated: 6.74; Mature: 6.74

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
3.4 %Met     (Translated Protein)
4.1 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
3.1 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MARIALKVDVDTLRGTREGVPALLSMLSAAEAEATFLFSLGPDHTGWALRRVFRPGFLKK
CCEEEEEEEHHHHCCCCCCHHHHHHHHHHHCCCEEEEEEECCCCHHHHHHHHHCCHHHHH
VSRTSVVSNYGLRTLMYGVLLPGPDIGRKGAAEMRAAAAAGHECGIHTWDHVYWQDNVRE
HHHHHHHHHCCHHHHHHHHHCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCEEECCCCHH
RDAAWTRRQMQQSFERFTDIFGAAPTTHGAAGWQMNNEAFRQIDDWGMVYASDGRGTAPY
HHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHCCCEEEECCCCCCCCC
IPTVDGKACRHVQMPTTLPTLDELIGVDDLTEDNVHKAVLKLTEGDGDHIFTLHTELEGG
CCCCCCCCCCEEECCCCCHHHHHHHCCCCCCCHHHHHHHHEEECCCCCEEEEEEEECCCC
KLAPVFKRLLSGWRAQGHQLVSMATYYQHIDRSDLPQMPVTWGEIPGRSGELIIQP
CCCHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCEEECC
>Mature Secondary Structure 
ARIALKVDVDTLRGTREGVPALLSMLSAAEAEATFLFSLGPDHTGWALRRVFRPGFLKK
CEEEEEEEHHHHCCCCCCHHHHHHHHHHHCCCEEEEEEECCCCHHHHHHHHHCCHHHHH
VSRTSVVSNYGLRTLMYGVLLPGPDIGRKGAAEMRAAAAAGHECGIHTWDHVYWQDNVRE
HHHHHHHHHCCHHHHHHHHHCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCEEECCCCHH
RDAAWTRRQMQQSFERFTDIFGAAPTTHGAAGWQMNNEAFRQIDDWGMVYASDGRGTAPY
HHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHCCCEEEECCCCCCCCC
IPTVDGKACRHVQMPTTLPTLDELIGVDDLTEDNVHKAVLKLTEGDGDHIFTLHTELEGG
CCCCCCCCCCEEECCCCCHHHHHHHCCCCCCCHHHHHHHHEEECCCCCEEEEEEEECCCC
KLAPVFKRLLSGWRAQGHQLVSMATYYQHIDRSDLPQMPVTWGEIPGRSGELIIQP
CCCHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCEEECC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA