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The map label for this gene is dppB [H]

Identifier: 94313498

GI number: 94313498

Start: 1191274

End: 1192230

Strand: Direct

Name: dppB [H]

Synonym: Rmet_4576

Alternate gene names: 94313498

Gene position: 1191274-1192230 (Clockwise)

Preceding gene: 94313497

Following gene: 94313499

Centisome position: 46.17

GC content: 62.59

Gene sequence:

>957_bases
ATGAGCGCCTACTTCGTGCGTCGCCTGCTGGCACTGATACCGACGCTGCTCTTCGCCAGCATCATCGTGTTCACCATCGT
GCGCCTGGTGCCCGGCGACGTGGTCGATCTCATGCTGAGTCAGAACGACATCAGCGCCGATGCCCTCACCCGCGAGCAAC
TGGTCCACGCGCTAGGGCTCGACCGTCCTATCTGGGATCAATACCTGCGCTGGGTCACCAATATCGTGCTGCACGGTGAT
CTGGGGCAGTCCCTTTGGCAAAGCGAGCCGGTCCTGAAAATGGTGATGGCCCGAATCCCGGCCACCTTCTCGCTAGGTGT
GCTGGCCCTGTTCGTGGCACTGACGGTGGCGCTGCCCATCGGGATCGTGTCGGCCACCCGCCAGGACAGCGCCGTCGACT
ACGTGGCGCGGTCGTTCTCCATCCTGATGCTGGCCGTCCCCAGCTTCTGGCTCGGCACGATGGTGATCGTGTTCCCGTCA
GTGTGGTGGGGCTGGTCCCCCGACGTGCGCTACATCCCCTTTCTCGAAGACCCGGTGCAGCACGTGAAACAGATGCTGGT
GCCAGCCATCGTGCTGGGCATGGCGCTGTCCGCCATCACGATGCGGATGACGCGCACCATGATGCTGGAGGTACTGCGGC
AGGACTATATCCGCACAGCCTGGGCCAAGGGACTGAACGAACGACAGGTCATCTTCCGCCATGCGCTGCGCAATGCGTTG
ATTCCGGTGGTGACCCTCATCGGGCTGCAGGCACCGCTGCTGATCGGTGGCGCCGTCGTCATCGAACAGATCTTCGCGGT
ACCGGGCATGGGCCTGTTGCTGCTCGATGCCGTGCACCAGCGGGACTATCCGGTCATCACTGGTGTCTTTCTCGTGGTCG
GCGTGGCGGTGATGCTGATCAATCTGCTAGTAGACCTGAGCTACGGCCTGTTCGACCCCAAAGTGAGGCACCACTGA

Upstream 100 bases:

>100_bases
GCAACATGTCTGCGGTATCGACTGTACGCGCCACCCCGGGAACGACATCGGCAGCAACATCGCCGCCCGGAATCCAGCCA
GCATCGCTCAGGGGCTTGCC

Downstream 100 bases:

>100_bases
TGGCACACCCCTCCGTCGATCCACGCGCCGTGTCCCCTTCGCTCGTGACGGCCCAGGCGCCTCCCGCCTCGCGCAGGCGC
TCCCGGTTTCCCATGATGCG

Product: peptide ABC transporter permease

Products: ADP; phosphate; dipeptides [Cytoplasm] [C]

Alternate protein names: NA

Number of amino acids: Translated: 318; Mature: 317

Protein sequence:

>318_residues
MSAYFVRRLLALIPTLLFASIIVFTIVRLVPGDVVDLMLSQNDISADALTREQLVHALGLDRPIWDQYLRWVTNIVLHGD
LGQSLWQSEPVLKMVMARIPATFSLGVLALFVALTVALPIGIVSATRQDSAVDYVARSFSILMLAVPSFWLGTMVIVFPS
VWWGWSPDVRYIPFLEDPVQHVKQMLVPAIVLGMALSAITMRMTRTMMLEVLRQDYIRTAWAKGLNERQVIFRHALRNAL
IPVVTLIGLQAPLLIGGAVVIEQIFAVPGMGLLLLDAVHQRDYPVITGVFLVVGVAVMLINLLVDLSYGLFDPKVRHH

Sequences:

>Translated_318_residues
MSAYFVRRLLALIPTLLFASIIVFTIVRLVPGDVVDLMLSQNDISADALTREQLVHALGLDRPIWDQYLRWVTNIVLHGD
LGQSLWQSEPVLKMVMARIPATFSLGVLALFVALTVALPIGIVSATRQDSAVDYVARSFSILMLAVPSFWLGTMVIVFPS
VWWGWSPDVRYIPFLEDPVQHVKQMLVPAIVLGMALSAITMRMTRTMMLEVLRQDYIRTAWAKGLNERQVIFRHALRNAL
IPVVTLIGLQAPLLIGGAVVIEQIFAVPGMGLLLLDAVHQRDYPVITGVFLVVGVAVMLINLLVDLSYGLFDPKVRHH
>Mature_317_residues
SAYFVRRLLALIPTLLFASIIVFTIVRLVPGDVVDLMLSQNDISADALTREQLVHALGLDRPIWDQYLRWVTNIVLHGDL
GQSLWQSEPVLKMVMARIPATFSLGVLALFVALTVALPIGIVSATRQDSAVDYVARSFSILMLAVPSFWLGTMVIVFPSV
WWGWSPDVRYIPFLEDPVQHVKQMLVPAIVLGMALSAITMRMTRTMMLEVLRQDYIRTAWAKGLNERQVIFRHALRNALI
PVVTLIGLQAPLLIGGAVVIEQIFAVPGMGLLLLDAVHQRDYPVITGVFLVVGVAVMLINLLVDLSYGLFDPKVRHH

Specific function: This protein is a component of an oligopeptide permease, a binding protein-dependent transport system. This APP system can completely substitute for the OPP system in both sporulation and genetic competence, though, unlike OPP, is incapable of transportin

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI1789965, Length=340, Percent_Identity=41.4705882352941, Blast_Score=247, Evalue=6e-67,
Organism=Escherichia coli, GI1787053, Length=318, Percent_Identity=37.7358490566038, Blast_Score=210, Evalue=9e-56,
Organism=Escherichia coli, GI1789888, Length=320, Percent_Identity=36.875, Blast_Score=182, Evalue=2e-47,
Organism=Escherichia coli, GI1787497, Length=319, Percent_Identity=31.3479623824451, Blast_Score=163, Evalue=1e-41,
Organism=Escherichia coli, GI1787761, Length=330, Percent_Identity=34.8484848484849, Blast_Score=149, Evalue=3e-37,
Organism=Escherichia coli, GI1788504, Length=364, Percent_Identity=27.7472527472527, Blast_Score=142, Evalue=4e-35,
Organism=Escherichia coli, GI1787550, Length=281, Percent_Identity=28.1138790035587, Blast_Score=130, Evalue=9e-32,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 35410; Mature: 35279

Theoretical pI: Translated: 8.83; Mature: 8.83

Prosite motif: PS00104 EPSP_SYNTHASE_1 ; PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
4.4 %Met     (Translated Protein)
4.4 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
4.1 %Met     (Mature Protein)
4.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSAYFVRRLLALIPTLLFASIIVFTIVRLVPGDVVDLMLSQNDISADALTREQLVHALGL
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHCCCCCCHHHHHHHHHHHHHCC
DRPIWDQYLRWVTNIVLHGDLGQSLWQSEPVLKMVMARIPATFSLGVLALFVALTVALPI
CCHHHHHHHHHHHHHHHCCCHHHHHHCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH
GIVSATRQDSAVDYVARSFSILMLAVPSFWLGTMVIVFPSVWWGWSPDVRYIPFLEDPVQ
HHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHH
HVKQMLVPAIVLGMALSAITMRMTRTMMLEVLRQDYIRTAWAKGLNERQVIFRHALRNAL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH
IPVVTLIGLQAPLLIGGAVVIEQIFAVPGMGLLLLDAVHQRDYPVITGVFLVVGVAVMLI
HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
NLLVDLSYGLFDPKVRHH
HHHHHHHHCCCCCCCCCC
>Mature Secondary Structure 
SAYFVRRLLALIPTLLFASIIVFTIVRLVPGDVVDLMLSQNDISADALTREQLVHALGL
CHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHCCCCCCHHHHHHHHHHHHHCC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HHHHHHHHCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: ATP; dipeptides [Periplasm]; H2O [C]

Specific reaction: ATP + dipeptides [Periplasm] + H2O = ADP + phosphate + dipeptides [Cytoplasm] [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 7997159; 9384377 [H]