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The map label for this gene is ydhM [C]

Identifier: 94313407

GI number: 94313407

Start: 1082639

End: 1083232

Strand: Reverse

Name: ydhM [C]

Synonym: Rmet_4482

Alternate gene names: 94313407

Gene position: 1083232-1082639 (Counterclockwise)

Preceding gene: 94313410

Following gene: 94313397

Centisome position: 41.98

GC content: 63.47

Gene sequence:

>594_bases
ATGTCAGCAGCCGCCAAGCATCGTGATGCGATCGTGCAGAGTGCCGTCGCGCTTTTTCGGAAACAGGGTTATGCGGGCAC
CGGTCTGAGCGACATCCTTGGCGCAAGTGGCGCGCCAAAGGGGTCGCTTTACTACTACTTTCCGAACGGGAAGATCTCGA
TCGGCGTGGCGGCAATCGAGTTTGCTGGCAATAAGGTCGCGGCGACGCTGGAGGAGTTGGCGCGCCAATCTGACTCGCCT
TCCCGCCTGATCACGCAGTATTGCGGACTGCTTGCCGGCTGGATGAAGCAATCCGAGTTTCGGGACGGCTGCCCGATCAC
GACCACGCTTCTGGAACTCGCGCCGGAGCACGAAGACATCCGGCAGGCCGGCGAGGCGGCATTTGGCGCGTGGGCCTGCA
TCATCGAGCAGGCGCTGCTTCGAAGCGACGTGGAAGCGTCGCGGGCGCACCGCCTTTCCTGCATGGCAATGGCCACGATC
TCGGGAGCGCTGGTCCAGATGCGCGTGCAGAAGAGCGCCACGCCTTTGCTGGATGCCGCAGCCGAGCTCGGGCTGCTATT
TGAGACGGCCGTGCCGGATCGACGGCCAGGTTGA

Upstream 100 bases:

>100_bases
AGGCAAGCTTGTCCTGATGTTCCATGCACGTTCTCCTCGATATTATGTAGACCACTCTATATAATTCAATGAAGGAAAAC
AAGGCAAGGACCCGAACGAC

Downstream 100 bases:

>100_bases
GCGCATGAGCCCCCTGCCCTGCGCCCTTCCGCGGTCAAATCAACCTGCCGACGCCGACCAGGCCGTGTCCTTGTCCAGCG
GGTACACCGGCCTGGAGACA

Product: TetR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 197; Mature: 196

Protein sequence:

>197_residues
MSAAAKHRDAIVQSAVALFRKQGYAGTGLSDILGASGAPKGSLYYYFPNGKISIGVAAIEFAGNKVAATLEELARQSDSP
SRLITQYCGLLAGWMKQSEFRDGCPITTTLLELAPEHEDIRQAGEAAFGAWACIIEQALLRSDVEASRAHRLSCMAMATI
SGALVQMRVQKSATPLLDAAAELGLLFETAVPDRRPG

Sequences:

>Translated_197_residues
MSAAAKHRDAIVQSAVALFRKQGYAGTGLSDILGASGAPKGSLYYYFPNGKISIGVAAIEFAGNKVAATLEELARQSDSP
SRLITQYCGLLAGWMKQSEFRDGCPITTTLLELAPEHEDIRQAGEAAFGAWACIIEQALLRSDVEASRAHRLSCMAMATI
SGALVQMRVQKSATPLLDAAAELGLLFETAVPDRRPG
>Mature_196_residues
SAAAKHRDAIVQSAVALFRKQGYAGTGLSDILGASGAPKGSLYYYFPNGKISIGVAAIEFAGNKVAATLEELARQSDSPS
RLITQYCGLLAGWMKQSEFRDGCPITTTLLELAPEHEDIRQAGEAAFGAWACIIEQALLRSDVEASRAHRLSCMAMATIS
GALVQMRVQKSATPLLDAAAELGLLFETAVPDRRPG

Specific function: Unknown

COG id: COG1309

COG function: function code K; Transcriptional regulator

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH tetR-type DNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR015893
- InterPro:   IPR011075
- InterPro:   IPR001647 [H]

Pfam domain/function: PF00440 TetR_N [H]

EC number: NA

Molecular weight: Translated: 20915; Mature: 20784

Theoretical pI: Translated: 6.76; Mature: 6.76

Prosite motif: PS50977 HTH_TETR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.0 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
4.6 %Cys+Met (Translated Protein)
2.0 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
4.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSAAAKHRDAIVQSAVALFRKQGYAGTGLSDILGASGAPKGSLYYYFPNGKISIGVAAIE
CCCCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHCCCCCCCCCEEEEECCCEEEEEEEEEE
FAGNKVAATLEELARQSDSPSRLITQYCGLLAGWMKQSEFRDGCPITTTLLELAPEHEDI
CCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCHHHH
RQAGEAAFGAWACIIEQALLRSDVEASRAHRLSCMAMATISGALVQMRVQKSATPLLDAA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHH
AELGLLFETAVPDRRPG
HHHHHHHHHCCCCCCCC
>Mature Secondary Structure 
SAAAKHRDAIVQSAVALFRKQGYAGTGLSDILGASGAPKGSLYYYFPNGKISIGVAAIE
CCCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHCCCCCCCCCEEEEECCCEEEEEEEEEE
FAGNKVAATLEELARQSDSPSRLITQYCGLLAGWMKQSEFRDGCPITTTLLELAPEHEDI
CCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCHHHH
RQAGEAAFGAWACIIEQALLRSDVEASRAHRLSCMAMATISGALVQMRVQKSATPLLDAA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHH
AELGLLFETAVPDRRPG
HHHHHHHHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9634230; 12218036 [H]