Click here to switch to the map view.

The map label for this gene is yeeY [H]

Identifier: 94313222

GI number: 94313222

Start: 888893

End: 889807

Strand: Direct

Name: yeeY [H]

Synonym: Rmet_4296

Alternate gene names: 94313222

Gene position: 888893-889807 (Clockwise)

Preceding gene: 291481525

Following gene: 291481526

Centisome position: 34.45

GC content: 63.61

Gene sequence:

>915_bases
ATGCTCGACGCCGTCTCGCTGGACCAACTCCGCACCTTCATTGCCGCCGTGGACGAAGGCAGCTTCTCCGCGGCGGGTCG
CAAACTACGGAGGGCGCAGTCCGTCGTCAGCCACACGCTTGCCAATCTGGAGGGGCAAATCGGTGTGCAACTGTTCGACC
GCAGCGGACGCTATCCGCGGCTGACGGAGCAGGGCACGGCACTGCTGGCGCAGGCTCGCCTGGTCGTGAGCGGGATGGAC
GGTTTCAAGTCGACGGCAAGGGCTATCGCAGAAGGGCTGGAGCCTGAACTTTCGGTGGTGGTGGACGTGATGTACCCGAT
GGCTTCGCTCACGGACGCGGTCGGCGCGTTCCGGAAGGCGTTTCCTCACACGCCGCTGCGGCTTTATGTCGAGGCACTTG
GCGCAGTCCTGCAGCCCGTGCTGGCGCAGCAATGCCGGCTTGGAATCAGCGGCTCGATGCCTTCCGTCCCGGAGGTCATG
GATGCGGAAAAGCTACTCGATGTGCCAATGGTGACAGTGACCAGCCCGTCACATCCGTTGGCCACCCGCACGGGAGTTCT
ACGGCCGCGCGACCTGAAGGCGCATGTGCAACTGGTGCTGACCGACCGGACATCGCTGACCGACGGCATGACCTTCGATG
TGTTCTCGCCGCAGACCTGGCACCTGGCCGATCTTGGTGCCAAGCACGCCTTTCTGCGCGCGGGGTTCGGATGGGGGCAT
ATGCCGGTCGAGATGGTTCAGCACGATCTGGATACAGGCTATTTGGTCAGGTTGCAGATCGAGCAGTTCCAACCGCATAC
GCCGCCTATTTCGATGTTTGCGGTCTACCGAAAGGACACGCCACCAGGGCCCGCAGGGCAATGGTTCCTGCGCAGGCTCA
AGGGAGGCGAGGCGGCGTCGCTCCCAGCGCGTTAA

Upstream 100 bases:

>100_bases
GCTTGCTGGGGTTGTGCCCCGTTGCTGAAGAAGATTAGGCGGGCGAAATCCATGTCGGTAGCCTATATTTCTAGATGTTT
CCCATCTACAGAGTAGATAG

Downstream 100 bases:

>100_bases
AGGCCATGCGTTGATGGAGCGATGGGCCCCTGCTTGCTCGCAACTTCGCCGGTCGTCGGTATGTGTTTGCGAAGCGGATG
CCTCCGCTCAAGCGTGCAAT

Product: LysR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 304; Mature: 304

Protein sequence:

>304_residues
MLDAVSLDQLRTFIAAVDEGSFSAAGRKLRRAQSVVSHTLANLEGQIGVQLFDRSGRYPRLTEQGTALLAQARLVVSGMD
GFKSTARAIAEGLEPELSVVVDVMYPMASLTDAVGAFRKAFPHTPLRLYVEALGAVLQPVLAQQCRLGISGSMPSVPEVM
DAEKLLDVPMVTVTSPSHPLATRTGVLRPRDLKAHVQLVLTDRTSLTDGMTFDVFSPQTWHLADLGAKHAFLRAGFGWGH
MPVEMVQHDLDTGYLVRLQIEQFQPHTPPISMFAVYRKDTPPGPAGQWFLRRLKGGEAASLPAR

Sequences:

>Translated_304_residues
MLDAVSLDQLRTFIAAVDEGSFSAAGRKLRRAQSVVSHTLANLEGQIGVQLFDRSGRYPRLTEQGTALLAQARLVVSGMD
GFKSTARAIAEGLEPELSVVVDVMYPMASLTDAVGAFRKAFPHTPLRLYVEALGAVLQPVLAQQCRLGISGSMPSVPEVM
DAEKLLDVPMVTVTSPSHPLATRTGVLRPRDLKAHVQLVLTDRTSLTDGMTFDVFSPQTWHLADLGAKHAFLRAGFGWGH
MPVEMVQHDLDTGYLVRLQIEQFQPHTPPISMFAVYRKDTPPGPAGQWFLRRLKGGEAASLPAR
>Mature_304_residues
MLDAVSLDQLRTFIAAVDEGSFSAAGRKLRRAQSVVSHTLANLEGQIGVQLFDRSGRYPRLTEQGTALLAQARLVVSGMD
GFKSTARAIAEGLEPELSVVVDVMYPMASLTDAVGAFRKAFPHTPLRLYVEALGAVLQPVLAQQCRLGISGSMPSVPEVM
DAEKLLDVPMVTVTSPSHPLATRTGVLRPRDLKAHVQLVLTDRTSLTDGMTFDVFSPQTWHLADLGAKHAFLRAGFGWGH
MPVEMVQHDLDTGYLVRLQIEQFQPHTPPISMFAVYRKDTPPGPAGQWFLRRLKGGEAASLPAR

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI87082024, Length=258, Percent_Identity=29.4573643410853, Blast_Score=94, Evalue=7e-21,
Organism=Escherichia coli, GI1789492, Length=293, Percent_Identity=27.3037542662116, Blast_Score=92, Evalue=4e-20,
Organism=Escherichia coli, GI1786713, Length=265, Percent_Identity=26.0377358490566, Blast_Score=84, Evalue=1e-17,
Organism=Escherichia coli, GI1787949, Length=292, Percent_Identity=26.3698630136986, Blast_Score=77, Evalue=1e-15,
Organism=Escherichia coli, GI1786508, Length=295, Percent_Identity=21.3559322033898, Blast_Score=67, Evalue=2e-12,
Organism=Escherichia coli, GI1787879, Length=183, Percent_Identity=25.6830601092896, Blast_Score=66, Evalue=2e-12,
Organism=Escherichia coli, GI145693105, Length=181, Percent_Identity=24.8618784530387, Blast_Score=66, Evalue=3e-12,
Organism=Escherichia coli, GI1789204, Length=203, Percent_Identity=28.0788177339901, Blast_Score=65, Evalue=5e-12,
Organism=Escherichia coli, GI1790262, Length=205, Percent_Identity=27.3170731707317, Blast_Score=65, Evalue=5e-12,
Organism=Escherichia coli, GI1788626, Length=257, Percent_Identity=28.0155642023346, Blast_Score=65, Evalue=5e-12,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 33119; Mature: 33119

Theoretical pI: Translated: 8.49; Mature: 8.49

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
3.6 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
3.6 %Met     (Mature Protein)
3.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLDAVSLDQLRTFIAAVDEGSFSAAGRKLRRAQSVVSHTLANLEGQIGVQLFDRSGRYPR
CCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCC
LTEQGTALLAQARLVVSGMDGFKSTARAIAEGLEPELSVVVDVMYPMASLTDAVGAFRKA
CCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
FPHTPLRLYVEALGAVLQPVLAQQCRLGISGSMPSVPEVMDAEKLLDVPMVTVTSPSHPL
CCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHCHHHHHCCCEEEECCCCCCC
ATRTGVLRPRDLKAHVQLVLTDRTSLTDGMTFDVFSPQTWHLADLGAKHAFLRAGFGWGH
HHHCCCCCCCCCCEEEEEEEECCCCCCCCCEEECCCCCCEEHHHHCHHHHHHHCCCCCCC
MPVEMVQHDLDTGYLVRLQIEQFQPHTPPISMFAVYRKDTPPGPAGQWFLRRLKGGEAAS
CHHHHHHHCCCCCEEEEEEEECCCCCCCCEEEEEEEECCCCCCCHHHHHHHHHCCCCCCC
LPAR
CCCC
>Mature Secondary Structure
MLDAVSLDQLRTFIAAVDEGSFSAAGRKLRRAQSVVSHTLANLEGQIGVQLFDRSGRYPR
CCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCC
LTEQGTALLAQARLVVSGMDGFKSTARAIAEGLEPELSVVVDVMYPMASLTDAVGAFRKA
CCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
FPHTPLRLYVEALGAVLQPVLAQQCRLGISGSMPSVPEVMDAEKLLDVPMVTVTSPSHPL
CCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHCHHHHHCCCEEEECCCCCCC
ATRTGVLRPRDLKAHVQLVLTDRTSLTDGMTFDVFSPQTWHLADLGAKHAFLRAGFGWGH
HHHCCCCCCCCCCEEEEEEEECCCCCCCCCEEECCCCCCEEHHHHCHHHHHHHCCCCCCC
MPVEMVQHDLDTGYLVRLQIEQFQPHTPPISMFAVYRKDTPPGPAGQWFLRRLKGGEAAS
CHHHHHHHCCCCCEEEEEEEECCCCCCCCEEEEEEEECCCCCCCHHHHHHHHHCCCCCCC
LPAR
CCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9097040; 9278503 [H]