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The map label for this gene is ybhD [H]

Identifier: 94313171

GI number: 94313171

Start: 831685

End: 832581

Strand: Direct

Name: ybhD [H]

Synonym: Rmet_4244

Alternate gene names: 94313171

Gene position: 831685-832581 (Clockwise)

Preceding gene: 94313170

Following gene: 291481521

Centisome position: 32.23

GC content: 61.32

Gene sequence:

>897_bases
GTGCGAGACATGCCAATGACGTCCAGTGTGACCATCAATCAGTTGCGCCATTTTCTGCTGGTCGTGGAACATGGCGGATT
CCGCCCCGCGGCGGGCGAAGCGTTCCGGTCGCAGCCGGCACTGTCGCGGTCCATCAAGGAGCTTGAACAACGCCTGGGCG
GCGCGCTGTTCGAGCCGGGCCGCGCGGATGTCACACAGCTTGGCGCAGCCTGTCTGCCGTACGCGCGAGACCTGATCGAT
CACTTCGATCGCGCGGTTGGCGCGATGCAGCGACTAGCGGACAGGGAGGAGGGGACGCTAGCCATTGCCTCGGTGCCTAC
CATTGCTACCCAGTGGCTTCCGGAGCTTATCCGCCGCTATATCGAGCGCTACCCGAAGATCGAGATTCGGGTGCTCGATG
ATCATTCTCGTAATATCCAGGCGATGGTTCTGGCTGGCGAGGTGGACTTTGGCCTCTGCAGCCGTGTCGGCAACGACACG
CGGCTGCGGTTCCAGTCATTGATCAAGGACAGCTTCGGACTGGTTTGCCGTGTTGATCACCCACTTGCGAACCGACGCAC
GGTGCGATGGAGTGAGATCGCCAGCCTGCCGATGATCGGGACTGTGGCGCACAAGCAGATCGAGGGCGTACCGGAAATGG
AGCTGTTGGCAGGCAGCCATCTGTTCGTCTCGAACATGCTGTCGCTGATTGCGATGCTTGAAGAAGGGCTTGGCGTGACC
ATACTGCCTTCGCTCGGCGTGCCATCCAATGCCCGGGATCTCGTCTTCGTGCCGCTGACAGGGCCCAAGGTTCACCGTGA
ACTTGGCATTCTTTCCCTGCGCAGCAGATCCCTGAGTCCCGCAGCGGCGCCGATGGCGGATATGTTGCTCGAACACGCGC
TGGTTGCGAATCGCTGA

Upstream 100 bases:

>100_bases
GAGGGCGGCGGTCCGTACTGATGGTATTCGGAAATGCCACGCCGAAGAAGACGCGGCGTGCATAATAGTCGCATAACTGA
TGCATCGGGGGCATCAGCCC

Downstream 100 bases:

>100_bases
GCCACCACCCTAGGCGAGTACATATCCTGCACCACCGCGAGATACAGCCAACCTTGGTCCATGTGTGATGTGCGGGGCCA
AGGCTTGGCTCGTTCGATCA

Product: transcriptional regulator of the LysR family

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 298; Mature: 298

Protein sequence:

>298_residues
MRDMPMTSSVTINQLRHFLLVVEHGGFRPAAGEAFRSQPALSRSIKELEQRLGGALFEPGRADVTQLGAACLPYARDLID
HFDRAVGAMQRLADREEGTLAIASVPTIATQWLPELIRRYIERYPKIEIRVLDDHSRNIQAMVLAGEVDFGLCSRVGNDT
RLRFQSLIKDSFGLVCRVDHPLANRRTVRWSEIASLPMIGTVAHKQIEGVPEMELLAGSHLFVSNMLSLIAMLEEGLGVT
ILPSLGVPSNARDLVFVPLTGPKVHRELGILSLRSRSLSPAAAPMADMLLEHALVANR

Sequences:

>Translated_298_residues
MRDMPMTSSVTINQLRHFLLVVEHGGFRPAAGEAFRSQPALSRSIKELEQRLGGALFEPGRADVTQLGAACLPYARDLID
HFDRAVGAMQRLADREEGTLAIASVPTIATQWLPELIRRYIERYPKIEIRVLDDHSRNIQAMVLAGEVDFGLCSRVGNDT
RLRFQSLIKDSFGLVCRVDHPLANRRTVRWSEIASLPMIGTVAHKQIEGVPEMELLAGSHLFVSNMLSLIAMLEEGLGVT
ILPSLGVPSNARDLVFVPLTGPKVHRELGILSLRSRSLSPAAAPMADMLLEHALVANR
>Mature_298_residues
MRDMPMTSSVTINQLRHFLLVVEHGGFRPAAGEAFRSQPALSRSIKELEQRLGGALFEPGRADVTQLGAACLPYARDLID
HFDRAVGAMQRLADREEGTLAIASVPTIATQWLPELIRRYIERYPKIEIRVLDDHSRNIQAMVLAGEVDFGLCSRVGNDT
RLRFQSLIKDSFGLVCRVDHPLANRRTVRWSEIASLPMIGTVAHKQIEGVPEMELLAGSHLFVSNMLSLIAMLEEGLGVT
ILPSLGVPSNARDLVFVPLTGPKVHRELGILSLRSRSLSPAAAPMADMLLEHALVANR

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI145693105, Length=288, Percent_Identity=30.5555555555556, Blast_Score=147, Evalue=1e-36,
Organism=Escherichia coli, GI1790399, Length=297, Percent_Identity=28.2828282828283, Blast_Score=91, Evalue=9e-20,
Organism=Escherichia coli, GI1788748, Length=307, Percent_Identity=26.0586319218241, Blast_Score=87, Evalue=2e-18,
Organism=Escherichia coli, GI157672245, Length=288, Percent_Identity=26.7361111111111, Blast_Score=86, Evalue=4e-18,
Organism=Escherichia coli, GI1787879, Length=292, Percent_Identity=27.7397260273973, Blast_Score=82, Evalue=3e-17,
Organism=Escherichia coli, GI1787601, Length=188, Percent_Identity=26.063829787234, Blast_Score=79, Evalue=4e-16,
Organism=Escherichia coli, GI1787530, Length=263, Percent_Identity=25.8555133079848, Blast_Score=76, Evalue=2e-15,
Organism=Escherichia coli, GI87081904, Length=278, Percent_Identity=28.0575539568345, Blast_Score=74, Evalue=1e-14,
Organism=Escherichia coli, GI1788887, Length=265, Percent_Identity=24.5283018867925, Blast_Score=69, Evalue=3e-13,
Organism=Escherichia coli, GI87082132, Length=166, Percent_Identity=30.1204819277108, Blast_Score=64, Evalue=9e-12,
Organism=Escherichia coli, GI1788296, Length=177, Percent_Identity=30.5084745762712, Blast_Score=64, Evalue=1e-11,
Organism=Escherichia coli, GI1789204, Length=249, Percent_Identity=24.0963855421687, Blast_Score=64, Evalue=2e-11,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 32852; Mature: 32852

Theoretical pI: Translated: 7.70; Mature: 7.70

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
3.7 %Met     (Translated Protein)
4.7 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
3.7 %Met     (Mature Protein)
4.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRDMPMTSSVTINQLRHFLLVVEHGGFRPAAGEAFRSQPALSRSIKELEQRLGGALFEPG
CCCCCCCCCHHHHHHHHHHEEEECCCCCCCCCHHHHCCHHHHHHHHHHHHHHCCCCCCCC
RADVTQLGAACLPYARDLIDHFDRAVGAMQRLADREEGTLAIASVPTIATQWLPELIRRY
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECHHHHHHHHHHHHHHH
IERYPKIEIRVLDDHSRNIQAMVLAGEVDFGLCSRVGNDTRLRFQSLIKDSFGLVCRVDH
HHHCCCEEEEEECCCCCCEEEEEEECCCCHHHHHHCCCCHHHHHHHHHHHCCCEEEEECC
PLANRRTVRWSEIASLPMIGTVAHKQIEGVPEMELLAGSHLFVSNMLSLIAMLEEGLGVT
CCCCCCCCCHHHHHCCCCHHHHHHHHHCCCCCHHHHCCCHHHHHHHHHHHHHHHCCCCEE
ILPSLGVPSNARDLVFVPLTGPKVHRELGILSLRSRSLSPAAAPMADMLLEHALVANR
EEECCCCCCCCCCEEEEECCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MRDMPMTSSVTINQLRHFLLVVEHGGFRPAAGEAFRSQPALSRSIKELEQRLGGALFEPG
CCCCCCCCCHHHHHHHHHHEEEECCCCCCCCCHHHHCCHHHHHHHHHHHHHHCCCCCCCC
RADVTQLGAACLPYARDLIDHFDRAVGAMQRLADREEGTLAIASVPTIATQWLPELIRRY
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECHHHHHHHHHHHHHHH
IERYPKIEIRVLDDHSRNIQAMVLAGEVDFGLCSRVGNDTRLRFQSLIKDSFGLVCRVDH
HHHCCCEEEEEECCCCCCEEEEEEECCCCHHHHHHCCCCHHHHHHHHHHHCCCEEEEECC
PLANRRTVRWSEIASLPMIGTVAHKQIEGVPEMELLAGSHLFVSNMLSLIAMLEEGLGVT
CCCCCCCCCHHHHHCCCCHHHHHHHHHCCCCCHHHHCCCHHHHHHHHHHHHHHHCCCCEE
ILPSLGVPSNARDLVFVPLTGPKVHRELGILSLRSRSLSPAAAPMADMLLEHALVANR
EEECCCCCCCCCCEEEEECCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8905232; 9278503 [H]