Click here to switch to the map view.

The map label for this gene is omp

Identifier: 94313157

GI number: 94313157

Start: 815689

End: 816828

Strand: Reverse

Name: omp

Synonym: Rmet_4230

Alternate gene names: NA

Gene position: 816828-815689 (Counterclockwise)

Preceding gene: 94313158

Following gene: 94313156

Centisome position: 31.66

GC content: 59.82

Gene sequence:

>1140_bases
ATGAAGTTCAAACTACTGGCCATTGCAGCCACTTCGGCAGCCGCTTCGCTGGCGGCAAGCAGCGCCTATGCGCAATCGAG
CGTGACTCTCTATGGTGTTGCCGACGCAGGCGTGGAGTACTTGAACAAGGCCGCCGCATCGAATGGCGGCGTACAGCCCG
GCACGAAGGGTCAAAGCCTTTTTGCGCTTCAGTCTGGTAATCAGTCGGGCTCCCGCTGGGGCCTGCGCGGCATTGAAGAC
CTTGGTGGCGGCCTGAAGGGAATCTTCACGCTGGAAAGCGGATTCAATGTTGACGATGGCAAGATGGGCCAGAGCGGCCG
CCTGTTTGGACGCGCCGCGTACGTCGGTCTGCAGAATCAGTGGGGGCGGCTGACTCTGGGTCGTCACACCACCCCTGGCT
TTGACTTCGGTTTGGCCTTCGATCCGATGAGCATTTCGAGCCGCTACTCGATCACTTCGCAGGATCCGTGGTTCGCCTCG
CGAGCAGACAACTCCGCCAAGTACATGGGCACGTTCGGTGGCCTGACCGTGTCCGCTCTGTACAGCCTCAACAACAACAA
CCAGGAAGTTCCGGGAAACTTCACCAACGGCCGTGAGTACTCATTCTCCGCGATCTACGCTGCCGGCCCGTTCTCGGTCG
GTGCCGTGTACGACCAGACGAACCGCTCACAAGCTACCGCCCTGTCAACTAACAAACTGACCCGTCACGCCGCTATCGCC
GGTACGTACGCGTTCGGTCAGGCCAAGGTCTTCGCTGGCTACCGCTATGCGCACGCCTACAACGGCGATGTTCTGGTAGG
CACTCCGAGCCACGCCAACGGTTCATCGAACCTGGCTTGGGCTGGTCTGGGTTACCAGGTAACGCCCGCCCTGTCACTGG
CAGGTGCCGCCTACTACCAGAACCTGCGTAACGCCAACGCCGGTAACCCGTGGCAATTCGTTGCCTTGGCTGATTACTCA
CTTTCGAAGCGGACCGATCTGTACGCGTCGATGTCGTACGCCCTGAACAACGGCAAGTCGACCCTTGGCGTGAACGGCTT
CAATGACCAGTTGGGTTCGGCAACCTCGTCGAACTCGGAAGGTGTTCAACCGGGCGCAAACCAGTTTGGTGCGGTAGTCG
GCGTTCGCCACAAGTTCTAA

Upstream 100 bases:

>100_bases
GTGCTTGGAATACCTTCGATTCGAGGATCAGAATCATCAGCTCGCGTATCGGATCAGTCTGTATGCGGTTATGAATTCTT
ACTAAAATCGGAGGAAGATA

Downstream 100 bases:

>100_bases
GCACAAGGGACTAAATCGGATAAGCCCAGGAGATTCCTGGGCTCCGGGGCCTCGGCATGTTGGCGAATCACTCGCGCAAG
AAGACGCGATGACGAAGACG

Product: outer membrane porin

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 379; Mature: 379

Protein sequence:

>379_residues
MKFKLLAIAATSAAASLAASSAYAQSSVTLYGVADAGVEYLNKAAASNGGVQPGTKGQSLFALQSGNQSGSRWGLRGIED
LGGGLKGIFTLESGFNVDDGKMGQSGRLFGRAAYVGLQNQWGRLTLGRHTTPGFDFGLAFDPMSISSRYSITSQDPWFAS
RADNSAKYMGTFGGLTVSALYSLNNNNQEVPGNFTNGREYSFSAIYAAGPFSVGAVYDQTNRSQATALSTNKLTRHAAIA
GTYAFGQAKVFAGYRYAHAYNGDVLVGTPSHANGSSNLAWAGLGYQVTPALSLAGAAYYQNLRNANAGNPWQFVALADYS
LSKRTDLYASMSYALNNGKSTLGVNGFNDQLGSATSSNSEGVQPGANQFGAVVGVRHKF

Sequences:

>Translated_379_residues
MKFKLLAIAATSAAASLAASSAYAQSSVTLYGVADAGVEYLNKAAASNGGVQPGTKGQSLFALQSGNQSGSRWGLRGIED
LGGGLKGIFTLESGFNVDDGKMGQSGRLFGRAAYVGLQNQWGRLTLGRHTTPGFDFGLAFDPMSISSRYSITSQDPWFAS
RADNSAKYMGTFGGLTVSALYSLNNNNQEVPGNFTNGREYSFSAIYAAGPFSVGAVYDQTNRSQATALSTNKLTRHAAIA
GTYAFGQAKVFAGYRYAHAYNGDVLVGTPSHANGSSNLAWAGLGYQVTPALSLAGAAYYQNLRNANAGNPWQFVALADYS
LSKRTDLYASMSYALNNGKSTLGVNGFNDQLGSATSSNSEGVQPGANQFGAVVGVRHKF
>Mature_379_residues
MKFKLLAIAATSAAASLAASSAYAQSSVTLYGVADAGVEYLNKAAASNGGVQPGTKGQSLFALQSGNQSGSRWGLRGIED
LGGGLKGIFTLESGFNVDDGKMGQSGRLFGRAAYVGLQNQWGRLTLGRHTTPGFDFGLAFDPMSISSRYSITSQDPWFAS
RADNSAKYMGTFGGLTVSALYSLNNNNQEVPGNFTNGREYSFSAIYAAGPFSVGAVYDQTNRSQATALSTNKLTRHAAIA
GTYAFGQAKVFAGYRYAHAYNGDVLVGTPSHANGSSNLAWAGLGYQVTPALSLAGAAYYQNLRNANAGNPWQFVALADYS
LSKRTDLYASMSYALNNGKSTLGVNGFNDQLGSATSSNSEGVQPGANQFGAVVGVRHKF

Specific function: Forms anion selective channels [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell outer membrane; Multi-pass membrane protein [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: To bacterial outer membrane proteins and porins [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001702
- InterPro:   IPR002299 [H]

Pfam domain/function: PF00267 Porin_1 [H]

EC number: NA

Molecular weight: Translated: 39667; Mature: 39667

Theoretical pI: Translated: 9.74; Mature: 9.74

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
1.3 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
1.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKFKLLAIAATSAAASLAASSAYAQSSVTLYGVADAGVEYLNKAAASNGGVQPGTKGQSL
CCEEEEEEEECHHHHHHHHHHHHCCCCEEEEEEHHHHHHHHHHHHCCCCCCCCCCCCCEE
FALQSGNQSGSRWGLRGIEDLGGGLKGIFTLESGFNVDDGKMGQSGRLFGRAAYVGLQNQ
EEEECCCCCCCCCCCCCHHHHCCCCEEEEEECCCCCCCCCCCCCCCCEEEEEEEEECCCC
WGRLTLGRHTTPGFDFGLAFDPMSISSRYSITSQDPWFASRADNSAKYMGTFGGLTVSAL
CCEEEECCCCCCCCCCCEEECCCCCCCEEEECCCCCCEECCCCCCCEEEEECCCEEEEEE
YSLNNNNQEVPGNFTNGREYSFSAIYAAGPFSVGAVYDQTNRSQATALSTNKLTRHAAIA
EEECCCCCCCCCCCCCCCEEEEEEEEECCCCEECEEEECCCCCCEEEECHHHHHHHHHEE
GTYAFGQAKVFAGYRYAHAYNGDVLVGTPSHANGSSNLAWAGLGYQVTPALSLAGAAYYQ
EEEECCCEEEEECEEEEEEECCCEEEECCCCCCCCCCEEEEECCEEECHHHHHHHHHHHH
NLRNANAGNPWQFVALADYSLSKRTDLYASMSYALNNGKSTLGVNGFNDQLGSATSSNSE
HHHCCCCCCCEEEEEEECCCCCCCHHHHHEEEEHHCCCCCEEECCCCCHHHCCCCCCCCC
GVQPGANQFGAVVGVRHKF
CCCCCCHHCCEEEEEEECC
>Mature Secondary Structure
MKFKLLAIAATSAAASLAASSAYAQSSVTLYGVADAGVEYLNKAAASNGGVQPGTKGQSL
CCEEEEEEEECHHHHHHHHHHHHCCCCEEEEEEHHHHHHHHHHHHCCCCCCCCCCCCCEE
FALQSGNQSGSRWGLRGIEDLGGGLKGIFTLESGFNVDDGKMGQSGRLFGRAAYVGLQNQ
EEEECCCCCCCCCCCCCHHHHCCCCEEEEEECCCCCCCCCCCCCCCCEEEEEEEEECCCC
WGRLTLGRHTTPGFDFGLAFDPMSISSRYSITSQDPWFASRADNSAKYMGTFGGLTVSAL
CCEEEECCCCCCCCCCCEEECCCCCCCEEEECCCCCCEECCCCCCCEEEEECCCEEEEEE
YSLNNNNQEVPGNFTNGREYSFSAIYAAGPFSVGAVYDQTNRSQATALSTNKLTRHAAIA
EEECCCCCCCCCCCCCCCEEEEEEEEECCCCEECEEEECCCCCCEEEECHHHHHHHHHEE
GTYAFGQAKVFAGYRYAHAYNGDVLVGTPSHANGSSNLAWAGLGYQVTPALSLAGAAYYQ
EEEECCCEEEEECEEEEEEECCCEEEECCCCCCCCCCEEEEECCEEECHHHHHHHHHHHH
NLRNANAGNPWQFVALADYSLSKRTDLYASMSYALNNGKSTLGVNGFNDQLGSATSSNSE
HHHCCCCCCCEEEEEEECCCCCCCHHHHHEEEEHHCCCCCEEECCCCCHHHCCCCCCCCC
GVQPGANQFGAVVGVRHKF
CCCCCCHHCCEEEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 1658537; 12910271 [H]