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The map label for this gene is ybhD [H]

Identifier: 94313153

GI number: 94313153

Start: 811441

End: 812376

Strand: Direct

Name: ybhD [H]

Synonym: Rmet_4226

Alternate gene names: 94313153

Gene position: 811441-812376 (Clockwise)

Preceding gene: 94313152

Following gene: 94313159

Centisome position: 31.45

GC content: 58.55

Gene sequence:

>936_bases
ATGTACCATCGAACTGTCCATCCAATTGCCTGCGCCATGAACTTCACACTCAGGGAGTTCCGAGTATTCCGCGTCGTGTA
CGAACTCCGCAGTTTCAGCGGAGCTTCCCAGACCATTCACATGACGCAGTCGGCGGTGAGCAAGGTGTGCCAGGAGATGG
AGGCCAAGGTCGGGCAGCGGCTCTTCGAACGGTCGACTCGCAAGGTGACACCAACCCAGTTGGCGCACCAGTTGTATGGC
CATGTATGTGAAGTGCTCGGGACCATGGATGCCGCCGAGCGCAGTATGCAGAGCCTTCTGAACCTAGAAGCTGGCGAAGT
CAGCGTCGCATCGTCGCCAATGATGTGCGTGGGATTGTTGCGGGGGGCGGTTTCGGCGTTCCACGAAGCCCATCCGGCGA
TCCGGATCGGCATGCATGAGTTGTCGACGGACGAGACGATCGAGTACGTGGTTAATGGAAAGGCCGACTTCGGACTGGTT
TCGATGGAAGAAGCTCATCCCAAGCTCTCGATCGAGCACCTGTACAACGAATCCATGTTCGTGATCTGTGCCGGCGACCA
CGAACTGGCACGCAAGCGCAAGGTTAGCTGGGAGTTGCTTGCCGACTATCCACAGATCTCCTTGCATTCAACGTTCAGCA
CGCGGCGGACGATCGATCGCGTTTTTGCGTCGAGACATCTGGCGTACTCAACTTCCGTTGAAGTCGGGACGGTGCTGTCG
GCAATTAGTTTTGCGAAGGCGCGGCTCGGGGTTACGGTCTTGCCCGGCTACGTTCGGGAGTTCGTCTCGGAACTGGGCCT
GGTAGCGAGGGCATTGCCCTGCGAGGGAGTCGAACACCCCATCTCGCTCATTACACGTTGGAATGCGCGGCTTTCGACGC
CAGCAGAATGCCTGCTTGACAGCGTCAGGAAGCGACTGGCCGCCGCACGAGCCTAG

Upstream 100 bases:

>100_bases
GGCGACGTCTACGCTGGGTCAGAACCGGATGCTTACATGGCGCGGTTCCTTGAGCGCAAGAGGAAAAGCTGACAGGCGCT
AGTAATCGGACGAAGCGGTC

Downstream 100 bases:

>100_bases
CTGCGTAAGGAGACAGCGTCCCGGCACTGTCGTGTCCGAGGGCCGGTGCTCAGAACCGAATGATCCACGCGCCCGTCGTG
TAGCGATTGTGGTTGTTCCG

Product: LysR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 311; Mature: 311

Protein sequence:

>311_residues
MYHRTVHPIACAMNFTLREFRVFRVVYELRSFSGASQTIHMTQSAVSKVCQEMEAKVGQRLFERSTRKVTPTQLAHQLYG
HVCEVLGTMDAAERSMQSLLNLEAGEVSVASSPMMCVGLLRGAVSAFHEAHPAIRIGMHELSTDETIEYVVNGKADFGLV
SMEEAHPKLSIEHLYNESMFVICAGDHELARKRKVSWELLADYPQISLHSTFSTRRTIDRVFASRHLAYSTSVEVGTVLS
AISFAKARLGVTVLPGYVREFVSELGLVARALPCEGVEHPISLITRWNARLSTPAECLLDSVRKRLAAARA

Sequences:

>Translated_311_residues
MYHRTVHPIACAMNFTLREFRVFRVVYELRSFSGASQTIHMTQSAVSKVCQEMEAKVGQRLFERSTRKVTPTQLAHQLYG
HVCEVLGTMDAAERSMQSLLNLEAGEVSVASSPMMCVGLLRGAVSAFHEAHPAIRIGMHELSTDETIEYVVNGKADFGLV
SMEEAHPKLSIEHLYNESMFVICAGDHELARKRKVSWELLADYPQISLHSTFSTRRTIDRVFASRHLAYSTSVEVGTVLS
AISFAKARLGVTVLPGYVREFVSELGLVARALPCEGVEHPISLITRWNARLSTPAECLLDSVRKRLAAARA
>Mature_311_residues
MYHRTVHPIACAMNFTLREFRVFRVVYELRSFSGASQTIHMTQSAVSKVCQEMEAKVGQRLFERSTRKVTPTQLAHQLYG
HVCEVLGTMDAAERSMQSLLNLEAGEVSVASSPMMCVGLLRGAVSAFHEAHPAIRIGMHELSTDETIEYVVNGKADFGLV
SMEEAHPKLSIEHLYNESMFVICAGDHELARKRKVSWELLADYPQISLHSTFSTRRTIDRVFASRHLAYSTSVEVGTVLS
AISFAKARLGVTVLPGYVREFVSELGLVARALPCEGVEHPISLITRWNARLSTPAECLLDSVRKRLAAARA

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI145693105, Length=284, Percent_Identity=26.7605633802817, Blast_Score=120, Evalue=1e-28,
Organism=Escherichia coli, GI1788748, Length=293, Percent_Identity=28.3276450511945, Blast_Score=119, Evalue=3e-28,
Organism=Escherichia coli, GI1787879, Length=249, Percent_Identity=28.5140562248996, Blast_Score=92, Evalue=6e-20,
Organism=Escherichia coli, GI87081904, Length=302, Percent_Identity=23.5099337748344, Blast_Score=88, Evalue=8e-19,
Organism=Escherichia coli, GI157672245, Length=282, Percent_Identity=23.4042553191489, Blast_Score=84, Evalue=9e-18,
Organism=Escherichia coli, GI1788887, Length=298, Percent_Identity=24.8322147651007, Blast_Score=80, Evalue=1e-16,
Organism=Escherichia coli, GI1788297, Length=292, Percent_Identity=24.3150684931507, Blast_Score=75, Evalue=5e-15,
Organism=Escherichia coli, GI1787589, Length=192, Percent_Identity=28.125, Blast_Score=74, Evalue=1e-14,
Organism=Escherichia coli, GI1787601, Length=194, Percent_Identity=24.7422680412371, Blast_Score=73, Evalue=2e-14,
Organism=Escherichia coli, GI1790262, Length=268, Percent_Identity=22.7611940298507, Blast_Score=69, Evalue=3e-13,
Organism=Escherichia coli, GI1787530, Length=256, Percent_Identity=23.828125, Blast_Score=69, Evalue=4e-13,
Organism=Escherichia coli, GI1789204, Length=257, Percent_Identity=24.124513618677, Blast_Score=69, Evalue=5e-13,
Organism=Escherichia coli, GI1788481, Length=242, Percent_Identity=22.7272727272727, Blast_Score=64, Evalue=1e-11,
Organism=Escherichia coli, GI1786401, Length=175, Percent_Identity=25.7142857142857, Blast_Score=64, Evalue=1e-11,
Organism=Escherichia coli, GI87082132, Length=269, Percent_Identity=22.6765799256506, Blast_Score=62, Evalue=4e-11,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 34578; Mature: 34578

Theoretical pI: Translated: 8.10; Mature: 8.10

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.3 %Cys     (Translated Protein)
3.5 %Met     (Translated Protein)
5.8 %Cys+Met (Translated Protein)
2.3 %Cys     (Mature Protein)
3.5 %Met     (Mature Protein)
5.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MYHRTVHPIACAMNFTLREFRVFRVVYELRSFSGASQTIHMTQSAVSKVCQEMEAKVGQR
CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
LFERSTRKVTPTQLAHQLYGHVCEVLGTMDAAERSMQSLLNLEAGEVSVASSPMMCVGLL
HHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCHHHHHHH
RGAVSAFHEAHPAIRIGMHELSTDETIEYVVNGKADFGLVSMEEAHPKLSIEHLYNESMF
HHHHHHHHHCCCHHEEHHHHCCCCHHHHHEECCCCCCCEEEHHHCCCCCCHHHHCCCCEE
VICAGDHELARKRKVSWELLADYPQISLHSTFSTRRTIDRVFASRHLAYSTSVEVGTVLS
EEECCCHHHHHHHCCCHHHHHCCCCCEEHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHH
AISFAKARLGVTVLPGYVREFVSELGLVARALPCEGVEHPISLITRWNARLSTPAECLLD
HHHHHHHHCCCEECCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCCCHHHHHHH
SVRKRLAAARA
HHHHHHHHCCC
>Mature Secondary Structure
MYHRTVHPIACAMNFTLREFRVFRVVYELRSFSGASQTIHMTQSAVSKVCQEMEAKVGQR
CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
LFERSTRKVTPTQLAHQLYGHVCEVLGTMDAAERSMQSLLNLEAGEVSVASSPMMCVGLL
HHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCHHHHHHH
RGAVSAFHEAHPAIRIGMHELSTDETIEYVVNGKADFGLVSMEEAHPKLSIEHLYNESMF
HHHHHHHHHCCCHHEEHHHHCCCCHHHHHEECCCCCCCEEEHHHCCCCCCHHHHCCCCEE
VICAGDHELARKRKVSWELLADYPQISLHSTFSTRRTIDRVFASRHLAYSTSVEVGTVLS
EEECCCHHHHHHHCCCHHHHHCCCCCEEHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHH
AISFAKARLGVTVLPGYVREFVSELGLVARALPCEGVEHPISLITRWNARLSTPAECLLD
HHHHHHHHCCCEECCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCCCHHHHHHH
SVRKRLAAARA
HHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8905232; 9278503 [H]