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The map label for this gene is yfdE [H]

Identifier: 94313151

GI number: 94313151

Start: 809458

End: 810612

Strand: Direct

Name: yfdE [H]

Synonym: Rmet_4224

Alternate gene names: 94313151

Gene position: 809458-810612 (Clockwise)

Preceding gene: 94313150

Following gene: 94313152

Centisome position: 31.37

GC content: 61.65

Gene sequence:

>1155_bases
ATGACGCATCGCGCACCGGATACGACAGGGCCGCTTGCGGGCGTCCGTGTGCTGGATCTGACGTCGGTCATCATGGGTCC
CGTCTGCACGCAGATTCTGGCCGACTATGGGGCGACGGTCGTAAAGATCGAGCCGCCTGATGGTGACGTGATGCGCCATG
CCGGCAACAAGCGCGCACCTGGCATGGGAAGCATGTTCCTTCATGCGAACCAGGGAAAATCGTCTGTCGTGCTGGATCTC
AAGCAAGAGGAAGATGTCCGAACGCTCAGAGAGATGCTACCGGGCTTTGACGTGCTCGTGCACAACGTGCGACCGCAAGC
CATGCGCAGGTTGGGGCTCGATGAAGCGGCCGTGCACGGCCTGAATCCGTCGATCATCTATGTTGAACTGACCGGGTATG
CAGAGGGTGGGCCGCTGCACGGACGTGCGGCGTATGACGACGTTATTCAGGCGCAGACGGGGCTGGCCGAACTGTTCTCT
CGCCAGACGGGTGGCGCGCCTCAGTATGTGCCGACGCTGATAGCGGACAGGGTGACCGGCCTGACCGCCGCGCACGCCAC
CATTGCAGCACTGTTCGCGCGCAAAAGCACGGGTCACGGTGATACGGTCCGCGTATCGATGTTCGAGACGATGGCGGCGT
TCGTCCTTGCGGATCACCTCGGCGGAGCGTCGTTCGAACCATCGGCTGGCGCCATGGGATACAGCCGCTTGCTGACACCG
CACCGGAAGCCATATCGGACGCGCGATGGCTACATCGCGGCGGTTGTCTACAACGACAAGCACTGGAAGTCGTTCTTCGA
GGCGATTGATGATCTCGCGACGTTCGAGCGCGACAGCCGGTTTCAAACTGCGCCCGCACGGGCCGAGAACTACGACGTCA
TCTATGGTCACCTCTCGCAGGTCATGCTGACTCGCACCACCGACGCGTGGGTGGCGCTGCTGGAAGCCGCGGATATTCCG
TGCGCGCGTGTCAATCGCGTGGAAGACCTGCTGGAAGATGCGCAGCTTCGCGCGGTTGGCTTCTTTGATCAGCGCGATTT
TGGCGACGGTGGACAACGGCGTATCGTTTCTCGCTTTCGCTCGCCAGCCGCGCGAAATAATCTTGCAACGCCGGCGCCAA
TGCTTGGTCAGTCGGCAGGGGAACTGGAAGAATGA

Upstream 100 bases:

>100_bases
TGGTTGCGGCTCCGGCCAGCACGCGTGACTTTGCGGCATTCACTGTCGCTCAGCGCGGCATCTGGACGTCCAGGGCCACC
AAGGCGGGTGTGGAGCAGCA

Downstream 100 bases:

>100_bases
ATCAGGAAACGGCAAAAATGGTGAACACGGAAGAGATCAAACATCTGTCACTCGATGTGTCGGAGCAAGGCGTGGCGACA
CTGCGCATCGCCAATGGCAC

Product: L-carnitine dehydratase/bile acid-inducible protein F

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 384; Mature: 383

Protein sequence:

>384_residues
MTHRAPDTTGPLAGVRVLDLTSVIMGPVCTQILADYGATVVKIEPPDGDVMRHAGNKRAPGMGSMFLHANQGKSSVVLDL
KQEEDVRTLREMLPGFDVLVHNVRPQAMRRLGLDEAAVHGLNPSIIYVELTGYAEGGPLHGRAAYDDVIQAQTGLAELFS
RQTGGAPQYVPTLIADRVTGLTAAHATIAALFARKSTGHGDTVRVSMFETMAAFVLADHLGGASFEPSAGAMGYSRLLTP
HRKPYRTRDGYIAAVVYNDKHWKSFFEAIDDLATFERDSRFQTAPARAENYDVIYGHLSQVMLTRTTDAWVALLEAADIP
CARVNRVEDLLEDAQLRAVGFFDQRDFGDGGQRRIVSRFRSPAARNNLATPAPMLGQSAGELEE

Sequences:

>Translated_384_residues
MTHRAPDTTGPLAGVRVLDLTSVIMGPVCTQILADYGATVVKIEPPDGDVMRHAGNKRAPGMGSMFLHANQGKSSVVLDL
KQEEDVRTLREMLPGFDVLVHNVRPQAMRRLGLDEAAVHGLNPSIIYVELTGYAEGGPLHGRAAYDDVIQAQTGLAELFS
RQTGGAPQYVPTLIADRVTGLTAAHATIAALFARKSTGHGDTVRVSMFETMAAFVLADHLGGASFEPSAGAMGYSRLLTP
HRKPYRTRDGYIAAVVYNDKHWKSFFEAIDDLATFERDSRFQTAPARAENYDVIYGHLSQVMLTRTTDAWVALLEAADIP
CARVNRVEDLLEDAQLRAVGFFDQRDFGDGGQRRIVSRFRSPAARNNLATPAPMLGQSAGELEE
>Mature_383_residues
THRAPDTTGPLAGVRVLDLTSVIMGPVCTQILADYGATVVKIEPPDGDVMRHAGNKRAPGMGSMFLHANQGKSSVVLDLK
QEEDVRTLREMLPGFDVLVHNVRPQAMRRLGLDEAAVHGLNPSIIYVELTGYAEGGPLHGRAAYDDVIQAQTGLAELFSR
QTGGAPQYVPTLIADRVTGLTAAHATIAALFARKSTGHGDTVRVSMFETMAAFVLADHLGGASFEPSAGAMGYSRLLTPH
RKPYRTRDGYIAAVVYNDKHWKSFFEAIDDLATFERDSRFQTAPARAENYDVIYGHLSQVMLTRTTDAWVALLEAADIPC
ARVNRVEDLLEDAQLRAVGFFDQRDFGDGGQRRIVSRFRSPAARNNLATPAPMLGQSAGELEE

Specific function: Unknown

COG id: COG1804

COG function: function code C; Predicted acyl-CoA transferases/carnitine dehydratase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the CaiB/BaiF CoA-transferase family [H]

Homologues:

Organism=Homo sapiens, GI300863128, Length=381, Percent_Identity=28.3464566929134, Blast_Score=154, Evalue=2e-37,
Organism=Homo sapiens, GI300863124, Length=339, Percent_Identity=29.2035398230088, Blast_Score=149, Evalue=6e-36,
Organism=Homo sapiens, GI300863126, Length=378, Percent_Identity=26.1904761904762, Blast_Score=129, Evalue=4e-30,
Organism=Homo sapiens, GI13376042, Length=339, Percent_Identity=26.5486725663717, Blast_Score=117, Evalue=3e-26,
Organism=Homo sapiens, GI266456254, Length=384, Percent_Identity=26.0416666666667, Blast_Score=93, Evalue=4e-19,
Organism=Homo sapiens, GI42794625, Length=384, Percent_Identity=26.0416666666667, Blast_Score=93, Evalue=5e-19,
Organism=Homo sapiens, GI266458397, Length=205, Percent_Identity=33.1707317073171, Blast_Score=92, Evalue=9e-19,
Organism=Homo sapiens, GI266458393, Length=205, Percent_Identity=33.1707317073171, Blast_Score=92, Evalue=1e-18,
Organism=Homo sapiens, GI42822893, Length=145, Percent_Identity=32.4137931034483, Blast_Score=74, Evalue=3e-13,
Organism=Homo sapiens, GI266458395, Length=145, Percent_Identity=32.4137931034483, Blast_Score=73, Evalue=4e-13,
Organism=Escherichia coli, GI87082093, Length=339, Percent_Identity=30.0884955752212, Blast_Score=156, Evalue=2e-39,
Organism=Escherichia coli, GI1788717, Length=357, Percent_Identity=28.8515406162465, Blast_Score=114, Evalue=9e-27,
Organism=Escherichia coli, GI1786222, Length=384, Percent_Identity=25.5208333333333, Blast_Score=75, Evalue=5e-15,
Organism=Caenorhabditis elegans, GI115535051, Length=376, Percent_Identity=26.063829787234, Blast_Score=97, Evalue=2e-20,
Organism=Caenorhabditis elegans, GI32564160, Length=264, Percent_Identity=25.7575757575758, Blast_Score=90, Evalue=2e-18,
Organism=Drosophila melanogaster, GI24648431, Length=383, Percent_Identity=30.0261096605744, Blast_Score=161, Evalue=8e-40,
Organism=Drosophila melanogaster, GI24585488, Length=206, Percent_Identity=32.0388349514563, Blast_Score=94, Evalue=2e-19,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003673 [H]

Pfam domain/function: PF02515 CoA_transf_3 [H]

EC number: NA

Molecular weight: Translated: 41776; Mature: 41645

Theoretical pI: Translated: 6.38; Mature: 6.38

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
3.1 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTHRAPDTTGPLAGVRVLDLTSVIMGPVCTQILADYGATVVKIEPPDGDVMRHAGNKRAP
CCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHCCCCCCC
GMGSMFLHANQGKSSVVLDLKQEEDVRTLREMLPGFDVLVHNVRPQAMRRLGLDEAAVHG
CCCCEEEEECCCCCEEEEEECCCHHHHHHHHHCCCHHHHHHCCCHHHHHHCCCCHHHHCC
LNPSIIYVELTGYAEGGPLHGRAAYDDVIQAQTGLAELFSRQTGGAPQYVPTLIADRVTG
CCCCEEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH
LTAAHATIAALFARKSTGHGDTVRVSMFETMAAFVLADHLGGASFEPSAGAMGYSRLLTP
HHHHHHHHHHHHHHCCCCCCCEEEEHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHCCC
HRKPYRTRDGYIAAVVYNDKHWKSFFEAIDDLATFERDSRFQTAPARAENYDVIYGHLSQ
CCCCCCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCEEHHHHHH
VMLTRTTDAWVALLEAADIPCARVNRVEDLLEDAQLRAVGFFDQRDFGDGGQRRIVSRFR
HHHHCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHEEECCCCCCCCCCHHHHHHHHHC
SPAARNNLATPAPMLGQSAGELEE
CCHHCCCCCCCCHHHCCCCCCCCC
>Mature Secondary Structure 
THRAPDTTGPLAGVRVLDLTSVIMGPVCTQILADYGATVVKIEPPDGDVMRHAGNKRAP
CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHCCCCCCC
GMGSMFLHANQGKSSVVLDLKQEEDVRTLREMLPGFDVLVHNVRPQAMRRLGLDEAAVHG
CCCCEEEEECCCCCEEEEEECCCHHHHHHHHHCCCHHHHHHCCCHHHHHHCCCCHHHHCC
LNPSIIYVELTGYAEGGPLHGRAAYDDVIQAQTGLAELFSRQTGGAPQYVPTLIADRVTG
CCCCEEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH
LTAAHATIAALFARKSTGHGDTVRVSMFETMAAFVLADHLGGASFEPSAGAMGYSRLLTP
HHHHHHHHHHHHHHCCCCCCCEEEEHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHCCC
HRKPYRTRDGYIAAVVYNDKHWKSFFEAIDDLATFERDSRFQTAPARAENYDVIYGHLSQ
CCCCCCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCEEHHHHHH
VMLTRTTDAWVALLEAADIPCARVNRVEDLLEDAQLRAVGFFDQRDFGDGGQRRIVSRFR
HHHHCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHEEECCCCCCCCCCHHHHHHHHHC
SPAARNNLATPAPMLGQSAGELEE
CCHHCCCCCCCCHHHCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9205837; 9278503; 8125343 [H]