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The map label for this gene is tniA

Identifier: 94312973

GI number: 94312973

Start: 611070

End: 612788

Strand: Reverse

Name: tniA

Synonym: Rmet_4045

Alternate gene names: NA

Gene position: 612788-611070 (Counterclockwise)

Preceding gene: 94312977

Following gene: 94312972

Centisome position: 23.75

GC content: 64.51

Gene sequence:

>1719_bases
ATGCTCAATACTCGTGTGCACCAAAGCGAGATGAGCATGGCGACCGATACCGCACCGATTACCGAGCACGGCGTGGCCAC
CCTGCCAGAACAGGCATGGGAGCGTGCGCGTCGTCGCGCGGAGATCATTGGGCCGTTGGCGCAGTCGGAGACGGTTGGGC
ATGAAGCGGCCGACGCGGCAGCCCAGGCATTGGGGCTGTCCCGGCGGCAGGTCTACGTCCTGATCCGCCGTGCCCGGCTA
GGATCGGGGCTGGTCACTGACTTGGCTCTTGGGCAGTCGAGCGGTGGCAAAGGTAAAGGCCGCTTGCCGGAGTCGGTCGA
ACGAATCATCCGCGAGTTACTGCAAAAGCGCTTCCTGACCAAGCAGAAGCGTAGCTTGGCGGCGTTCCACCGCGAAGTTG
TGCGGGCGTGCAAGCTGCAAAAGCTGCGGGTGCCGGCGCGCAACACGGTGGCTCTGCGGATCGCCGGCCTCGATCCGCGC
GAGGTCACTCACCGCCGGGAAGGACAAGATGCCGCCCGCGACCTGCAAGGTGTTGGTGGTGTTCCGCCACCCGTCTCCGC
GCCGCTGGAGCAGGTGCAGATCGACCACACAGTCATCGACCTGATCGTGGTGGACGAGCGCGACCGGCAACCGATTGGCC
GTCCATACCTGACCCTCGCCATCGACGTATTCACCCGCTGCGTGGTTGGCATGGTCGTTACGCTGGAAGCCCCGTCCGCC
GTCTCGGTCGGCTTGTGCTTGGTGCATGCCGCCTGCGACAAGCGCCCTTGGTTGGAAGGGTTGAACGTAGAGATGGATTG
GCCGATGAGCGGCAAGCCCAGACTGCTCTACTTGGACAACGCGGCTGAGTTCAAGAGCGAGGCGCTGCGCCGTGGCTGCG
AGCAGCATGGCATCCGGTTGGACTATCGCCCGCTTGGGCAGCCGCACTACGGCGGTATCGTGGAACGGATCATCGGCACG
GCGATGCAGATGATCCACGACGAATTGCCGGGGACGACCTTCTCCAATCCTGACCAGCGCGGGGAATACGCCTCCGAGAA
GATGGCCGCCCTGACACTGCGCGAGCTGGAGCGCTGGCTCACATTGGCGGTCGGCACCTATCACGGCTCCGTGCACAACG
GCCTGCTCCAACCGCCGGCCGCGCGCTGGGCCGAAGCTATCACGCGGACCGGCGTGCCAACCGTCATCACTCGCGCTACG
GCTTTTCTGGTCGATTTTCTGCCCATCATCCGCCGCACGCTGACCCGCACCGGCTTCGTCATCGACCACATCCACTACTA
CGCCGATGCGCTCAAGCCGTGGATAGCTCGGCGGGACCGCTTGCCTGCGTTCCTGATCCGGCGCGACCCGCGCGACATCA
GCCGCATATGGGTGCTGGAACCAGAGGGGCAGCACTACCTGGAAATTCCCTACCGTACCTTGTCGCACCCGGCTGTCACC
CTCTGGGAACAACGACAGGCGCTGGCGAAATTGCGGCAGCAAGGGCGCGAACAGGTGGATGAGTCGGCGTTGTTCCGCAT
GATCGGCCAGATGCGCGAAATCGTTACCACCGCGCAGAAGGCTACGCGCAAGGCGCGGCGCGACGCGGATCGACGCCAGC
ATCTCAAGGCAACGGCAACGCCTGTCAAAACCACGCCACCACCGGGCGCTGACATGGATGGGCAGCAGGCAGACAACCAG
CCGCCGGCCAAACCGTTCGACCAGATTGAGGAGTGGTAG

Upstream 100 bases:

>100_bases
TTTTCAGAAGACGACTGCACCATTCAGCGCGGTTTGAAGCCTCTTGTGCATACGGCTCCTGACAGCCAGATATCAGGACT
CCTCTGCACGAAACTCGTCT

Downstream 100 bases:

>100_bases
CCGTGGAAGAATATCCCATCATCGACTTGTCCCACCTGCTGCCGGCGGCCCAGGGCTTGGCCCGTCTCCCGGCGGACGAA
CGCATCCATCGCCTTCGCGC

Product: transposase (Tn6048)

Products: NA

Alternate protein names: ORF 480 [H]

Number of amino acids: Translated: 572; Mature: 572

Protein sequence:

>572_residues
MLNTRVHQSEMSMATDTAPITEHGVATLPEQAWERARRRAEIIGPLAQSETVGHEAADAAAQALGLSRRQVYVLIRRARL
GSGLVTDLALGQSSGGKGKGRLPESVERIIRELLQKRFLTKQKRSLAAFHREVVRACKLQKLRVPARNTVALRIAGLDPR
EVTHRREGQDAARDLQGVGGVPPPVSAPLEQVQIDHTVIDLIVVDERDRQPIGRPYLTLAIDVFTRCVVGMVVTLEAPSA
VSVGLCLVHAACDKRPWLEGLNVEMDWPMSGKPRLLYLDNAAEFKSEALRRGCEQHGIRLDYRPLGQPHYGGIVERIIGT
AMQMIHDELPGTTFSNPDQRGEYASEKMAALTLRELERWLTLAVGTYHGSVHNGLLQPPAARWAEAITRTGVPTVITRAT
AFLVDFLPIIRRTLTRTGFVIDHIHYYADALKPWIARRDRLPAFLIRRDPRDISRIWVLEPEGQHYLEIPYRTLSHPAVT
LWEQRQALAKLRQQGREQVDESALFRMIGQMREIVTTAQKATRKARRDADRRQHLKATATPVKTTPPPGADMDGQQADNQ
PPAKPFDQIEEW

Sequences:

>Translated_572_residues
MLNTRVHQSEMSMATDTAPITEHGVATLPEQAWERARRRAEIIGPLAQSETVGHEAADAAAQALGLSRRQVYVLIRRARL
GSGLVTDLALGQSSGGKGKGRLPESVERIIRELLQKRFLTKQKRSLAAFHREVVRACKLQKLRVPARNTVALRIAGLDPR
EVTHRREGQDAARDLQGVGGVPPPVSAPLEQVQIDHTVIDLIVVDERDRQPIGRPYLTLAIDVFTRCVVGMVVTLEAPSA
VSVGLCLVHAACDKRPWLEGLNVEMDWPMSGKPRLLYLDNAAEFKSEALRRGCEQHGIRLDYRPLGQPHYGGIVERIIGT
AMQMIHDELPGTTFSNPDQRGEYASEKMAALTLRELERWLTLAVGTYHGSVHNGLLQPPAARWAEAITRTGVPTVITRAT
AFLVDFLPIIRRTLTRTGFVIDHIHYYADALKPWIARRDRLPAFLIRRDPRDISRIWVLEPEGQHYLEIPYRTLSHPAVT
LWEQRQALAKLRQQGREQVDESALFRMIGQMREIVTTAQKATRKARRDADRRQHLKATATPVKTTPPPGADMDGQQADNQ
PPAKPFDQIEEW
>Mature_572_residues
MLNTRVHQSEMSMATDTAPITEHGVATLPEQAWERARRRAEIIGPLAQSETVGHEAADAAAQALGLSRRQVYVLIRRARL
GSGLVTDLALGQSSGGKGKGRLPESVERIIRELLQKRFLTKQKRSLAAFHREVVRACKLQKLRVPARNTVALRIAGLDPR
EVTHRREGQDAARDLQGVGGVPPPVSAPLEQVQIDHTVIDLIVVDERDRQPIGRPYLTLAIDVFTRCVVGMVVTLEAPSA
VSVGLCLVHAACDKRPWLEGLNVEMDWPMSGKPRLLYLDNAAEFKSEALRRGCEQHGIRLDYRPLGQPHYGGIVERIIGT
AMQMIHDELPGTTFSNPDQRGEYASEKMAALTLRELERWLTLAVGTYHGSVHNGLLQPPAARWAEAITRTGVPTVITRAT
AFLVDFLPIIRRTLTRTGFVIDHIHYYADALKPWIARRDRLPAFLIRRDPRDISRIWVLEPEGQHYLEIPYRTLSHPAVT
LWEQRQALAKLRQQGREQVDESALFRMIGQMREIVTTAQKATRKARRDADRRQHLKATATPVKTTPPPGADMDGQQADNQ
PPAKPFDQIEEW

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 integrase catalytic domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR001584
- InterPro:   IPR012337
- InterPro:   IPR015378
- InterPro:   IPR009004 [H]

Pfam domain/function: PF09299 Mu-transpos_C; PF00665 rve [H]

EC number: NA

Molecular weight: Translated: 64139; Mature: 64139

Theoretical pI: Translated: 9.97; Mature: 9.97

Prosite motif: PS50994 INTEGRASE

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLNTRVHQSEMSMATDTAPITEHGVATLPEQAWERARRRAEIIGPLAQSETVGHEAADAA
CCCCCCCHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCHHHHHHCCHHHHHHH
AQALGLSRRQVYVLIRRARLGSGLVTDLALGQSSGGKGKGRLPESVERIIRELLQKRFLT
HHHHCCCHHHHHHHHHHHHCCCCHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHH
KQKRSLAAFHREVVRACKLQKLRVPARNTVALRIAGLDPREVTHRREGQDAARDLQGVGG
HHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCHHHHHHHHCCHHHHHHHHCCCC
VPPPVSAPLEQVQIDHTVIDLIVVDERDRQPIGRPYLTLAIDVFTRCVVGMVVTLEAPSA
CCCCCCCCHHHHHHHHEEEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHEEECCCCH
VSVGLCLVHAACDKRPWLEGLNVEMDWPMSGKPRLLYLDNAAEFKSEALRRGCEQHGIRL
HHHHHHHHHHHHCCCCCCCCCCEEECCCCCCCCEEEEECCHHHHHHHHHHHHHHHCCCEE
DYRPLGQPHYGGIVERIIGTAMQMIHDELPGTTFSNPDQRGEYASEKMAALTLRELERWL
ECCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHCCHHHHHHHHHHHHHHHHHHH
TLAVGTYHGSVHNGLLQPPAARWAEAITRTGVPTVITRATAFLVDFLPIIRRTLTRTGFV
HHHHHHHCCHHHCCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCHH
IDHIHYYADALKPWIARRDRLPAFLIRRDPRDISRIWVLEPEGQHYLEIPYRTLSHPAVT
HHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCEEEEECCCCCCEEECCHHHHCCCHHH
LWEQRQALAKLRQQGREQVDESALFRMIGQMREIVTTAQKATRKARRDADRRQHLKATAT
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
PVKTTPPPGADMDGQQADNQPPAKPFDQIEEW
CCCCCCCCCCCCCCCCCCCCCCCCCHHHHHCC
>Mature Secondary Structure
MLNTRVHQSEMSMATDTAPITEHGVATLPEQAWERARRRAEIIGPLAQSETVGHEAADAA
CCCCCCCHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCHHHHHHCCHHHHHHH
AQALGLSRRQVYVLIRRARLGSGLVTDLALGQSSGGKGKGRLPESVERIIRELLQKRFLT
HHHHCCCHHHHHHHHHHHHCCCCHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHH
KQKRSLAAFHREVVRACKLQKLRVPARNTVALRIAGLDPREVTHRREGQDAARDLQGVGG
HHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCHHHHHHHHCCHHHHHHHHCCCC
VPPPVSAPLEQVQIDHTVIDLIVVDERDRQPIGRPYLTLAIDVFTRCVVGMVVTLEAPSA
CCCCCCCCHHHHHHHHEEEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHEEECCCCH
VSVGLCLVHAACDKRPWLEGLNVEMDWPMSGKPRLLYLDNAAEFKSEALRRGCEQHGIRL
HHHHHHHHHHHHCCCCCCCCCCEEECCCCCCCCEEEEECCHHHHHHHHHHHHHHHCCCEE
DYRPLGQPHYGGIVERIIGTAMQMIHDELPGTTFSNPDQRGEYASEKMAALTLRELERWL
ECCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHCCHHHHHHHHHHHHHHHHHHH
TLAVGTYHGSVHNGLLQPPAARWAEAITRTGVPTVITRATAFLVDFLPIIRRTLTRTGFV
HHHHHHHCCHHHCCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCHH
IDHIHYYADALKPWIARRDRLPAFLIRRDPRDISRIWVLEPEGQHYLEIPYRTLSHPAVT
HHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCEEEEECCCCCCEEECCHHHHCCCHHH
LWEQRQALAKLRQQGREQVDESALFRMIGQMREIVTTAQKATRKARRDADRRQHLKATAT
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
PVKTTPPPGADMDGQQADNQPPAKPFDQIEEW
CCCCCCCCCCCCCCCCCCCCCCCCCHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 2170815 [H]