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The map label for this gene is 94312959

Identifier: 94312959

GI number: 94312959

Start: 600612

End: 601001

Strand: Direct

Name: 94312959

Synonym: Rmet_4031

Alternate gene names: NA

Gene position: 600612-601001 (Clockwise)

Preceding gene: 94312958

Following gene: 94312962

Centisome position: 23.28

GC content: 60.0

Gene sequence:

>390_bases
ATGAAATACGCATTACCCCTCGTTCTTGCCCTGCTTGTCCATCCAGTCGCCAACGCAGCCAATGCAGCCAATGCCACCGT
CGGTAATGTCCAGACTGGCAAGGAGACCTTCACTCGGCTCTGCGCCTCATGCCACCGCGTCGGCCCGTCGGCGCGTGGCG
CATTCGGACCCCAGCTCAATGGCGTGTTCGGTCGCAAGGCCGGCAGTACGGCGGATTATCGTTATTCCGATGCGATGAAG
ACGTCGAACGTGGTCTGGTCGGATGCCACGCTGGGTGCCTTTGTACAGTCGCCAGGCAAGGTGGTGCCGGGCACGAAGAT
GCGTTTCTGGGGCATGAGCGATCCGCAGCAGATCGCCGATCTTCTTGCTTACCTACGCACCTTCCAATAG

Upstream 100 bases:

>100_bases
TCGGGCCGGTGCAGCGCACCGGGGCGCTGGGGGCGATCACGTCGGTCTATTGCCGTGATCCCGATGGAAACCTGATCGAG
GTGGCGAGCTATCCCGCAGC

Downstream 100 bases:

>100_bases
CGGCAAAGGCGGCGGGAAAAGGCGGCGGCAATGGCGGCGGCAATGGCGGGAGCGCAGGGAAAGCAGGAAGAGAAGGGCAG
CGCGTCAGCGCGGCTGGAAC

Product: cytochrome c, class I

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 129; Mature: 129

Protein sequence:

>129_residues
MKYALPLVLALLVHPVANAANAANATVGNVQTGKETFTRLCASCHRVGPSARGAFGPQLNGVFGRKAGSTADYRYSDAMK
TSNVVWSDATLGAFVQSPGKVVPGTKMRFWGMSDPQQIADLLAYLRTFQ

Sequences:

>Translated_129_residues
MKYALPLVLALLVHPVANAANAANATVGNVQTGKETFTRLCASCHRVGPSARGAFGPQLNGVFGRKAGSTADYRYSDAMK
TSNVVWSDATLGAFVQSPGKVVPGTKMRFWGMSDPQQIADLLAYLRTFQ
>Mature_129_residues
MKYALPLVLALLVHPVANAANAANATVGNVQTGKETFTRLCASCHRVGPSARGAFGPQLNGVFGRKAGSTADYRYSDAMK
TSNVVWSDATLGAFVQSPGKVVPGTKMRFWGMSDPQQIADLLAYLRTFQ

Specific function: Cytochrome c2 is found mainly in purple, non-sulfur, photosynthetic bacteria where it functions as the electron donor to the oxidized bacteriochlorophyll in the photophosphorylation pathway. However, it may also have a role in the respiratory chain and is

COG id: COG3474

COG function: function code C; Cytochrome c2

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 cytochrome c domain [H]

Homologues:

Organism=Homo sapiens, GI11128019, Length=100, Percent_Identity=40, Blast_Score=96, Evalue=6e-21,
Organism=Caenorhabditis elegans, GI17566554, Length=99, Percent_Identity=40.4040404040404, Blast_Score=82, Evalue=1e-16,
Organism=Caenorhabditis elegans, GI17539604, Length=99, Percent_Identity=38.3838383838384, Blast_Score=81, Evalue=2e-16,
Organism=Saccharomyces cerevisiae, GI6322508, Length=99, Percent_Identity=35.3535353535354, Blast_Score=82, Evalue=3e-17,
Organism=Saccharomyces cerevisiae, GI6320796, Length=98, Percent_Identity=33.6734693877551, Blast_Score=80, Evalue=1e-16,
Organism=Drosophila melanogaster, GI17137228, Length=100, Percent_Identity=41, Blast_Score=99, Evalue=9e-22,
Organism=Drosophila melanogaster, GI17137204, Length=100, Percent_Identity=39, Blast_Score=93, Evalue=4e-20,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002327
- InterPro:   IPR009056
- InterPro:   IPR003088 [H]

Pfam domain/function: PF00034 Cytochrom_C [H]

EC number: NA

Molecular weight: Translated: 13750; Mature: 13750

Theoretical pI: Translated: 10.32; Mature: 10.32

Prosite motif: PS51007 CYTC

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
3.1 %Met     (Translated Protein)
4.7 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
3.1 %Met     (Mature Protein)
4.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKYALPLVLALLVHPVANAANAANATVGNVQTGKETFTRLCASCHRVGPSARGAFGPQLN
CCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCC
GVFGRKAGSTADYRYSDAMKTSNVVWSDATLGAFVQSPGKVVPGTKMRFWGMSDPQQIAD
CCCCCCCCCCCCCCHHHHHCCCCEEECCCHHHHHHCCCCCCCCCCCEEECCCCCHHHHHH
LLAYLRTFQ
HHHHHHHCC
>Mature Secondary Structure
MKYALPLVLALLVHPVANAANAANATVGNVQTGKETFTRLCASCHRVGPSARGAFGPQLN
CCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCC
GVFGRKAGSTADYRYSDAMKTSNVVWSDATLGAFVQSPGKVVPGTKMRFWGMSDPQQIAD
CCCCCCCCCCCCCCHHHHHCCCCEEECCCHHHHHHCCCCCCCCCCCEEECCCCCHHHHHH
LLAYLRTFQ
HHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 174109 [H]