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The map label for this gene is cph2 [H]

Identifier: 94312930

GI number: 94312930

Start: 573384

End: 574598

Strand: Reverse

Name: cph2 [H]

Synonym: Rmet_4002

Alternate gene names: 94312930

Gene position: 574598-573384 (Counterclockwise)

Preceding gene: 94312934

Following gene: 94312929

Centisome position: 22.27

GC content: 63.54

Gene sequence:

>1215_bases
ATGCCCGCCCAATTCGAAGCCCTGCGAGTCCTGATCGTCGAAGACCATCCGTTCCAGCGTGCGGTAGCGGGCCACTTGCT
CCACCGTCTGGGTGCCATGAATACCCATGCGGCGGCAGACGGGCGCGAGGCGGAACAGGCATTGCGCGAACAGGCGTTCG
ACCTGGTCCTCTGCGACATTGATATGCCCAACTGCAACGGACCGGAACTGATGGCGCGGCTGACCCGCGATCGCGAGCAC
GCGTTCTTTGGCACACCGCCGACTTGGGCATGGACCAGCAGTCTGGCACCAGACATCCTCGATTCGCATCGCGCCTTCGC
CAGCGAGCACATTTTCCCGCGCGTGTACGCGCTGGCCAAGCCGCTGAATTTGATAACGCTTCAGGCCATCCTGGAAGAGG
TCGCAACCAGCAAGAGCGTGCTGAACATTGCGAACCACAACGGGCCAACCGACGACGAGTTGCGTGATCTGACCAGCCAC
CCGGACGCGCTCGTCTTCATGCTCCAGCCACAGTTTCACATTGCGACCGGTCGCCTTGCTGGTGCGGAAGCGCTTTGCCG
CTGGCAGCATCCGAGACTGGGCCTGATACCGCCCACGCTCTTCATCCCCCGGCTCGAAGCGCTGGACGCCGCCGATGTGA
TCTTCCTCACCGCGATCGACCGGTGCCTTGCGGCTCTGATTCTTCTGGCCAAGGCCGGCGTTGCCGTGCCAATCAGTGTC
AATGCGTCGGCGCAGACGCTCTGCCGACCTGGCCTCGTGGAGCGGCTCGAAAGCGTGGTCGCCGCAAGCGGCGTGCCGCG
CGCACGGCTGACACTCGAATTGACCGAGGAAACCACCGTCCGGGATCCTTTCGCGCTCGGCATTGCGCTCAACCGCCTGC
GGCTGCTCGGCTACCGCATTGCCATCGACGACTTCGGTATCGGCATTGCCACGCTGAAACTGCTGGCGGACCTTCCATTC
ACGCAGATGAAGGTGGACAAGTCGTTTGTCAGCCAGATGCTGGCCGGAAACCAGCGCGCCACGATTTGCCGCAGCATCAT
CCGGCTGGCCAAGGATCTCAGCATGGAGTGCGTAGCCGAAGGCGTGGAAACGCCTGCGCAGTGCGCGGCGCTTCACGCAC
TCGGGTGCGATATCGGCCAGGGATACCTGTGGGCACCGCCCGAGCCCATCGACGTGTTTCTCAACGCCGCGCCCGGCCGT
TACGGACAGGAATGA

Upstream 100 bases:

>100_bases
GATCGAATGGCGTTGCCCCTACCAATATGGCCTGTCCTTTCTCATAAAGCTCCGTAGAATTCAAGTACTTCGCTCTCCAC
CTGCCATCGCAGAAAGCCCC

Downstream 100 bases:

>100_bases
TTGCCGCACGATGGCACGCCATCCCGTCACCCTGAAGCACCGGCCTTGACAGCACCCGCGAGCGCCTTAATCATCTCTTT
CGATTCACCTGCTGTGCCCC

Product: putative two-component response regulator

Products: NA

Alternate protein names: Bacteriophytochrome cph2 [H]

Number of amino acids: Translated: 404; Mature: 403

Protein sequence:

>404_residues
MPAQFEALRVLIVEDHPFQRAVAGHLLHRLGAMNTHAAADGREAEQALREQAFDLVLCDIDMPNCNGPELMARLTRDREH
AFFGTPPTWAWTSSLAPDILDSHRAFASEHIFPRVYALAKPLNLITLQAILEEVATSKSVLNIANHNGPTDDELRDLTSH
PDALVFMLQPQFHIATGRLAGAEALCRWQHPRLGLIPPTLFIPRLEALDAADVIFLTAIDRCLAALILLAKAGVAVPISV
NASAQTLCRPGLVERLESVVAASGVPRARLTLELTEETTVRDPFALGIALNRLRLLGYRIAIDDFGIGIATLKLLADLPF
TQMKVDKSFVSQMLAGNQRATICRSIIRLAKDLSMECVAEGVETPAQCAALHALGCDIGQGYLWAPPEPIDVFLNAAPGR
YGQE

Sequences:

>Translated_404_residues
MPAQFEALRVLIVEDHPFQRAVAGHLLHRLGAMNTHAAADGREAEQALREQAFDLVLCDIDMPNCNGPELMARLTRDREH
AFFGTPPTWAWTSSLAPDILDSHRAFASEHIFPRVYALAKPLNLITLQAILEEVATSKSVLNIANHNGPTDDELRDLTSH
PDALVFMLQPQFHIATGRLAGAEALCRWQHPRLGLIPPTLFIPRLEALDAADVIFLTAIDRCLAALILLAKAGVAVPISV
NASAQTLCRPGLVERLESVVAASGVPRARLTLELTEETTVRDPFALGIALNRLRLLGYRIAIDDFGIGIATLKLLADLPF
TQMKVDKSFVSQMLAGNQRATICRSIIRLAKDLSMECVAEGVETPAQCAALHALGCDIGQGYLWAPPEPIDVFLNAAPGR
YGQE
>Mature_403_residues
PAQFEALRVLIVEDHPFQRAVAGHLLHRLGAMNTHAAADGREAEQALREQAFDLVLCDIDMPNCNGPELMARLTRDREHA
FFGTPPTWAWTSSLAPDILDSHRAFASEHIFPRVYALAKPLNLITLQAILEEVATSKSVLNIANHNGPTDDELRDLTSHP
DALVFMLQPQFHIATGRLAGAEALCRWQHPRLGLIPPTLFIPRLEALDAADVIFLTAIDRCLAALILLAKAGVAVPISVN
ASAQTLCRPGLVERLESVVAASGVPRARLTLELTEETTVRDPFALGIALNRLRLLGYRIAIDDFGIGIATLKLLADLPFT
QMKVDKSFVSQMLAGNQRATICRSIIRLAKDLSMECVAEGVETPAQCAALHALGCDIGQGYLWAPPEPIDVFLNAAPGRY
GQE

Specific function: Photoreceptor which exists in two forms that are reversibly interconvertible by light:the R form that absorbs maximally in the red region of the spectrum and the FR form that absorbs maximally in the far-red region [H]

COG id: COG2200

COG function: function code T; FOG: EAL domain

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 GGDEF domains [H]

Homologues:

Organism=Escherichia coli, GI87081921, Length=229, Percent_Identity=32.7510917030568, Blast_Score=126, Evalue=2e-30,
Organism=Escherichia coli, GI226510982, Length=246, Percent_Identity=35.3658536585366, Blast_Score=123, Evalue=2e-29,
Organism=Escherichia coli, GI1786507, Length=231, Percent_Identity=34.1991341991342, Blast_Score=119, Evalue=5e-28,
Organism=Escherichia coli, GI87081743, Length=245, Percent_Identity=31.0204081632653, Blast_Score=107, Evalue=1e-24,
Organism=Escherichia coli, GI1790496, Length=251, Percent_Identity=31.0756972111554, Blast_Score=106, Evalue=3e-24,
Organism=Escherichia coli, GI1787055, Length=230, Percent_Identity=30, Blast_Score=103, Evalue=1e-23,
Organism=Escherichia coli, GI1787541, Length=233, Percent_Identity=30.4721030042918, Blast_Score=103, Evalue=2e-23,
Organism=Escherichia coli, GI87081845, Length=248, Percent_Identity=31.0483870967742, Blast_Score=97, Evalue=2e-21,
Organism=Escherichia coli, GI1788502, Length=232, Percent_Identity=29.3103448275862, Blast_Score=93, Evalue=3e-20,
Organism=Escherichia coli, GI87081980, Length=230, Percent_Identity=30.8695652173913, Blast_Score=93, Evalue=3e-20,
Organism=Escherichia coli, GI87082096, Length=197, Percent_Identity=31.9796954314721, Blast_Score=91, Evalue=2e-19,
Organism=Escherichia coli, GI1788849, Length=222, Percent_Identity=29.2792792792793, Blast_Score=84, Evalue=2e-17,
Organism=Escherichia coli, GI1787410, Length=163, Percent_Identity=27.6073619631902, Blast_Score=63, Evalue=4e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001054
- InterPro:   IPR000160
- InterPro:   IPR001633
- InterPro:   IPR003018
- InterPro:   IPR016132
- InterPro:   IPR001294
- InterPro:   IPR013515 [H]

Pfam domain/function: PF00563 EAL; PF01590 GAF; PF00990 GGDEF; PF00360 Phytochrome [H]

EC number: NA

Molecular weight: Translated: 44010; Mature: 43879

Theoretical pI: Translated: 5.75; Mature: 5.75

Prosite motif: PS50110 RESPONSE_REGULATORY ; PS50883 EAL

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.2 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
4.2 %Cys+Met (Translated Protein)
2.2 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
4.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPAQFEALRVLIVEDHPFQRAVAGHLLHRLGAMNTHAAADGREAEQALREQAFDLVLCDI
CCCCCEEEEEEEECCCCHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHEEEEEEC
DMPNCNGPELMARLTRDREHAFFGTPPTWAWTSSLAPDILDSHRAFASEHIFPRVYALAK
CCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHC
PLNLITLQAILEEVATSKSVLNIANHNGPTDDELRDLTSHPDALVFMLQPQFHIATGRLA
CHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCCEEEEEECCCEEEECCCCC
GAEALCRWQHPRLGLIPPTLFIPRLEALDAADVIFLTAIDRCLAALILLAKAGVAVPISV
CHHHHHHCCCCCCCCCCCHHHHCCHHHCCHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEC
NASAQTLCRPGLVERLESVVAASGVPRARLTLELTEETTVRDPFALGIALNRLRLLGYRI
CCCHHHHHCCHHHHHHHHHHHHCCCCCEEEEEEECCCCCCCCCHHHHHHHHHHHHHHEEE
AIDDFGIGIATLKLLADLPFTQMKVDKSFVSQMLAGNQRATICRSIIRLAKDLSMECVAE
EEECCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCHHHHHH
GVETPAQCAALHALGCDIGQGYLWAPPEPIDVFLNAAPGRYGQE
HCCCHHHHHHHHHHCCCCCCCEECCCCCCCEEEEECCCCCCCCC
>Mature Secondary Structure 
PAQFEALRVLIVEDHPFQRAVAGHLLHRLGAMNTHAAADGREAEQALREQAFDLVLCDI
CCCCEEEEEEEECCCCHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHEEEEEEC
DMPNCNGPELMARLTRDREHAFFGTPPTWAWTSSLAPDILDSHRAFASEHIFPRVYALAK
CCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHC
PLNLITLQAILEEVATSKSVLNIANHNGPTDDELRDLTSHPDALVFMLQPQFHIATGRLA
CHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCCEEEEEECCCEEEECCCCC
GAEALCRWQHPRLGLIPPTLFIPRLEALDAADVIFLTAIDRCLAALILLAKAGVAVPISV
CHHHHHHCCCCCCCCCCCHHHHCCHHHCCHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEC
NASAQTLCRPGLVERLESVVAASGVPRARLTLELTEETTVRDPFALGIALNRLRLLGYRI
CCCHHHHHCCHHHHHHHHHHHHCCCCCEEEEEEECCCCCCCCCHHHHHHHHHHHHHHEEE
AIDDFGIGIATLKLLADLPFTQMKVDKSFVSQMLAGNQRATICRSIIRLAKDLSMECVAE
EEECCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCHHHHHH
GVETPAQCAALHALGCDIGQGYLWAPPEPIDVFLNAAPGRYGQE
HCCCHHHHHHHHHHCCCCCCCEECCCCCCCEEEEECCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8590279; 8905231; 10978170; 11063585 [H]