Click here to switch to the map view.

The map label for this gene is ydgJ [H]

Identifier: 94312865

GI number: 94312865

Start: 495718

End: 496179

Strand: Direct

Name: ydgJ [H]

Synonym: Rmet_3937

Alternate gene names: 94312865

Gene position: 495718-496179 (Clockwise)

Preceding gene: 94312864

Following gene: 94312873

Centisome position: 19.21

GC content: 64.5

Gene sequence:

>462_bases
GTGGAACTGGAGCGACAAAGCCTGGCTGTCCTGCAGCAATTTGGCCGGACCTACCGGGCTTATGCTGCGGCATTTGAACA
GCGAATCGGACACCCGTTGCCGCGTTGGCGCATTCTGTTCGCGTTGTATGGGCACGAAGGCCCGATTGCTCAGAAGCCGC
TGGCCGATCGTGTCGGCATGGACCCCGGCGCGCTGACACGCCAGCTCAAGACGTTGCAGGAAATGGGTTGGGTCGACCGG
ATGACCAGCGAGCGCGACAACCGCATGACCAACGTCACGCTGAGCGCGCTTGGCCGCGAGATCGTTGACCAGGCAATGCC
GCGCCGCTCGGCATTCCTGCAGGACGTGCTGGCCAACGTCACGGAAACGACGATGCACAACCTCTCGAAGGGGCTGGTTC
AGCTCGAGGCGGGCATCGCCGACGCAGTCGCGCGCACGCAGGCGGAACGCGACGCCGCCTGA

Upstream 100 bases:

>100_bases
TTCCGCCGATCAAATTGATGCGGGTAAATGAACCCGTGATGGCTGCGGACTGATGACAGCCGTGCGGATGTGAAGCACAT
TCGCCTACAGGAGGAGTGGA

Downstream 100 bases:

>100_bases
TCTGGCAGCGTCGCCTGGCTGCTCTCTATCCGCCAAACAACGCCGCTATGGCCGTTGGGTTAGAAGGGAAGTACAGGTGC
ACGTAGGACGCGGTAAGCGA

Product: putative transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 153; Mature: 153

Protein sequence:

>153_residues
MELERQSLAVLQQFGRTYRAYAAAFEQRIGHPLPRWRILFALYGHEGPIAQKPLADRVGMDPGALTRQLKTLQEMGWVDR
MTSERDNRMTNVTLSALGREIVDQAMPRRSAFLQDVLANVTETTMHNLSKGLVQLEAGIADAVARTQAERDAA

Sequences:

>Translated_153_residues
MELERQSLAVLQQFGRTYRAYAAAFEQRIGHPLPRWRILFALYGHEGPIAQKPLADRVGMDPGALTRQLKTLQEMGWVDR
MTSERDNRMTNVTLSALGREIVDQAMPRRSAFLQDVLANVTETTMHNLSKGLVQLEAGIADAVARTQAERDAA
>Mature_153_residues
MELERQSLAVLQQFGRTYRAYAAAFEQRIGHPLPRWRILFALYGHEGPIAQKPLADRVGMDPGALTRQLKTLQEMGWVDR
MTSERDNRMTNVTLSALGREIVDQAMPRRSAFLQDVLANVTETTMHNLSKGLVQLEAGIADAVARTQAERDAA

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH marR-type DNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001845
- InterPro:   IPR000835
- InterPro:   IPR011991 [H]

Pfam domain/function: PF01047 MarR [H]

EC number: NA

Molecular weight: Translated: 17163; Mature: 17163

Theoretical pI: Translated: 9.02; Mature: 9.02

Prosite motif: PS50995 HTH_MARR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
4.6 %Met     (Translated Protein)
4.6 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
4.6 %Met     (Mature Protein)
4.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MELERQSLAVLQQFGRTYRAYAAAFEQRIGHPLPRWRILFALYGHEGPIAQKPLADRVGM
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCCCCCCHHHHCCC
DPGALTRQLKTLQEMGWVDRMTSERDNRMTNVTLSALGREIVDQAMPRRSAFLQDVLANV
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
TETTMHNLSKGLVQLEAGIADAVARTQAERDAA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MELERQSLAVLQQFGRTYRAYAAAFEQRIGHPLPRWRILFALYGHEGPIAQKPLADRVGM
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCCCCCCHHHHCCC
DPGALTRQLKTLQEMGWVDRMTSERDNRMTNVTLSALGREIVDQAMPRRSAFLQDVLANV
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
TETTMHNLSKGLVQLEAGIADAVARTQAERDAA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]