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The map label for this gene is ydhC [H]

Identifier: 94312561

GI number: 94312561

Start: 165316

End: 166056

Strand: Reverse

Name: ydhC [H]

Synonym: Rmet_3629

Alternate gene names: 94312561

Gene position: 166056-165316 (Counterclockwise)

Preceding gene: 94312562

Following gene: 94312560

Centisome position: 6.44

GC content: 65.86

Gene sequence:

>741_bases
ATGAACGACGCCACTGCCAGTGCCTACAGCCAGATTCCGGATGCCCCGGCTGCCAGCCTTGGTGCCCAGCATTCCCCGCT
TTTCGCGCTTGTCACCGATACGCTGCGCCAGCGCATTCTGGGCGGCCAGTACGAACCCGGCGAGCGGTTGGTGGAAAACA
CGCTGTCGCTGGAGCTGGGGGTATCGCGCATTCCCGTGCGCGAGGCACTGCGCGCGCTGGCGGCCGAAGGCCTGGTGCAC
ATCGAGCCACGCCGTGGCGCCTCGGTGGCGCGGCTGTCACCCAATATCGCCCGCGAGATGGTGGAGGTGCGCGCCACGCT
GGAAGGCCTCAATGCCAAGCTGGCCGCCCAGCGCCGCGACCCGGCATTGATCCAGGAACTCGAAAAGGTGTTGAAGGAAG
GCAATGACGCTGTCGACAGCGGTCAGACCCAGCGCTTTGTCGAGTTGAATTCGCGCTTCCACGAGGTACTTGGCACCATT
GCCGCAAACAGCGTGCTGCAGGAAATGATGCGATCGCTGCGCGAACGCACGGCGCTGCTGTTCGCCCCGGCGAACCTGAC
CCGCGCGCGCACCAACTGGGACGAACACGCGCAAATCCTTCAGGCAGTGATTGCCGGCGACGCCGACCTGGCATCCCTGC
TGGCCACGCGGCATGTCTACAGCGCGGCCAAGGCCGTCGAGGCCATGAATCCCGACGCGACGGCAGCATCCGCATCCGCG
GATGCCAACAAGGCGGCCTGA

Upstream 100 bases:

>100_bases
CCCTATGTCTGCACTCAGGGGGTGACGGTATACAATAGCGGCATTCACGCCGTGGCCCAGCGCAGCGGCGTCCACCGAAT
TCCGACGGCCGATCCCGACC

Downstream 100 bases:

>100_bases
CGACCTTCCCCCGCTTTTTCGGCTTTTCCGGCCTCTTCCGCCTCTCCCGCTTCTTCCCGAGTTACCCAATCCGTGGATCG
GTCCGGTGCATCTCGCACCG

Product: GntR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 246; Mature: 246

Protein sequence:

>246_residues
MNDATASAYSQIPDAPAASLGAQHSPLFALVTDTLRQRILGGQYEPGERLVENTLSLELGVSRIPVREALRALAAEGLVH
IEPRRGASVARLSPNIAREMVEVRATLEGLNAKLAAQRRDPALIQELEKVLKEGNDAVDSGQTQRFVELNSRFHEVLGTI
AANSVLQEMMRSLRERTALLFAPANLTRARTNWDEHAQILQAVIAGDADLASLLATRHVYSAAKAVEAMNPDATAASASA
DANKAA

Sequences:

>Translated_246_residues
MNDATASAYSQIPDAPAASLGAQHSPLFALVTDTLRQRILGGQYEPGERLVENTLSLELGVSRIPVREALRALAAEGLVH
IEPRRGASVARLSPNIAREMVEVRATLEGLNAKLAAQRRDPALIQELEKVLKEGNDAVDSGQTQRFVELNSRFHEVLGTI
AANSVLQEMMRSLRERTALLFAPANLTRARTNWDEHAQILQAVIAGDADLASLLATRHVYSAAKAVEAMNPDATAASASA
DANKAA
>Mature_246_residues
MNDATASAYSQIPDAPAASLGAQHSPLFALVTDTLRQRILGGQYEPGERLVENTLSLELGVSRIPVREALRALAAEGLVH
IEPRRGASVARLSPNIAREMVEVRATLEGLNAKLAAQRRDPALIQELEKVLKEGNDAVDSGQTQRFVELNSRFHEVLGTI
AANSVLQEMMRSLRERTALLFAPANLTRARTNWDEHAQILQAVIAGDADLASLLATRHVYSAAKAVEAMNPDATAASASA
DANKAA

Specific function: Unknown

COG id: COG1802

COG function: function code K; Transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH gntR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1787821, Length=209, Percent_Identity=28.7081339712919, Blast_Score=73, Evalue=1e-14,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011711
- InterPro:   IPR000485
- InterPro:   IPR000524
- InterPro:   IPR011991 [H]

Pfam domain/function: PF07729 FCD; PF00392 GntR [H]

EC number: NA

Molecular weight: Translated: 26389; Mature: 26389

Theoretical pI: Translated: 6.04; Mature: 6.04

Prosite motif: PS50949 HTH_GNTR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
2.0 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
2.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNDATASAYSQIPDAPAASLGAQHSPLFALVTDTLRQRILGGQYEPGERLVENTLSLELG
CCCCHHHHHHHCCCCCHHHCCCCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHC
VSRIPVREALRALAAEGLVHIEPRRGASVARLSPNIAREMVEVRATLEGLNAKLAAQRRD
CCCCCHHHHHHHHHHCCCEEECCCCCCCHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCC
PALIQELEKVLKEGNDAVDSGQTQRFVELNSRFHEVLGTIAANSVLQEMMRSLRERTALL
HHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEE
FAPANLTRARTNWDEHAQILQAVIAGDADLASLLATRHVYSAAKAVEAMNPDATAASASA
ECCCHHHHHHCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCCCCHHCCCC
DANKAA
CCCCCC
>Mature Secondary Structure
MNDATASAYSQIPDAPAASLGAQHSPLFALVTDTLRQRILGGQYEPGERLVENTLSLELG
CCCCHHHHHHHCCCCCHHHCCCCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHC
VSRIPVREALRALAAEGLVHIEPRRGASVARLSPNIAREMVEVRATLEGLNAKLAAQRRD
CCCCCHHHHHHHHHHCCCEEECCCCCCCHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCC
PALIQELEKVLKEGNDAVDSGQTQRFVELNSRFHEVLGTIAANSVLQEMMRSLRERTALL
HHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEE
FAPANLTRARTNWDEHAQILQAVIAGDADLASLLATRHVYSAAKAVEAMNPDATAASASA
ECCCHHHHHHCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCCCCHHCCCC
DANKAA
CCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9202461; 9384377 [H]