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The map label for this gene is rpoQ [C]

Identifier: 291481536

GI number: 291481536

Start: 1315262

End: 1315936

Strand: Direct

Name: rpoQ [C]

Synonym: NA

Alternate gene names: 291481536

Gene position: 1315262-1315936 (Clockwise)

Preceding gene: 94313603

Following gene: 94313609

Centisome position: 50.98

GC content: 64.59

Gene sequence:

>675_bases
ATGGGTGCACTCACATATCATTTCGAAGCGATCACCCCTGAACCTCGTGACGATGTTGATCGATCAAATCTCCGCGCAGT
CGTCGCCTGCATGAAGCCCGCTCCCGAGCGCGCCGGCATGGAGGCGATGGATGCGGTGGAGCAGCGCCTGCGTGCGCTGC
TCCTGGCCGGCCTGGGTGGCGATCAGGCCGCCTATCATGCATTCCTGACCGAACTGACCGGCCGGCTGCGCGCCTTTGTC
CGGCGGCGGCTCTATCAGTTGCAGGATGAAGTCGAGGACATCGTCCAGGAAACGCTTCTGGCGGTGCACAACGCCCGGCA
CACCTACCGCGCCGAGGAACCGCTGACGGCGTGGGTCTACGCGATTGCCCGCTACAAGCTGCTGGATTTCCTGCGTAGCC
GTTCCCGTCACGGGGCGACGGAGTCGCTGGACGATGTCGCGGACATCCTCTGCCATAGCGACGACGCGCCGGCGCACGAT
GCACGACTCGACCTGAGCGGCCTGCTCGAGCAACTGCCGGACAAGCAGCGGCTACCGATCCTGCACGTGAAACTGGAGGG
CCTGTCGGTGGCGGAGACCGCCCGGCTGACGGGGCTGTCCGAATCGGCGGTCAAGGTAGGTATTCATCGCGGGCTCAAGG
CATTGGCCGCCAAAGCCCGCCTGTTCACATCATGA

Upstream 100 bases:
NA

Downstream 100 bases:
NA

Product: RNA polymerase sigma factor

Products: NA

Alternate protein names: RNA Polymerase Sigma-24 Subunit ECF Subfamily; ECF Subfamily RNA Polymerase Sigma-24 Factor; Sigma-; RNA Polymerase ECF-Type Sigma Factor; RNA Polymerase Sigma-70 Factor; RNA Polymerase Sigma Factor Protein; RNA Polymerase Sigma-E Factor Protein; ECF-Family RNA Polymerase Sigma Factor; RNA Polymerase Sigma Q Factor; Extracytoplasmic Function AlteRNAtive Sigma Factor; RNA Polymerase Sigma Subunit ECF Family; RNA Polymerase ECF-Subfamily Sigma Factor; RNA Polymerase Sigma-24 Subunit ECF Subfamily Protein; RNA Polymerase Sigma-24 Factor; ECF-Type Sigma Factor; DNA-Directed RNA Polymeracialized Sigma Subunit; RNA Polymerase Sigma Factor NccH; RNA Polymerase Sigma Subunit; RNA Polymerase Sigma Factor SigM; RNA Polymerase Sigma Factor Sigma-70 Family; ECF Family RNA Polymerase Sigma Factor; Sigma-70 Family RNA Polymerase Sigma Factor

Number of amino acids: Translated: 224; Mature: 223

Protein sequence:
NA

Sequences:

>Translated_224_residues
MGALTYHFEAITPEPRDDVDRSNLRAVVACMKPAPERAGMEAMDAVEQRLRALLLAGLGGDQAAYHAFLTELTGRLRAFV
RRRLYQLQDEVEDIVQETLLAVHNARHTYRAEEPLTAWVYAIARYKLLDFLRSRSRHGATESLDDVADILCHSDDAPAHD
ARLDLSGLLEQLPDKQRLPILHVKLEGLSVAETARLTGLSESAVKVGIHRGLKALAAKARLFTS
>Mature_223_residues
GALTYHFEAITPEPRDDVDRSNLRAVVACMKPAPERAGMEAMDAVEQRLRALLLAGLGGDQAAYHAFLTELTGRLRAFVR
RRLYQLQDEVEDIVQETLLAVHNARHTYRAEEPLTAWVYAIARYKLLDFLRSRSRHGATESLDDVADILCHSDDAPAHDA
RLDLSGLLEQLPDKQRLPILHVKLEGLSVAETARLTGLSESAVKVGIHRGLKALAAKARLFTS

Specific function: Sigma Factors Are Initiation Factors That Promote The Attachment Of RNA Polymerase To Specific Initiation Sites And Are Then Released. This Sigma Factor Is Involved In Heat Shock And Oxidative Stress Response; It Is Believed To Control Protein Processing

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: <10 [C]

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 24884; Mature: 24753

Theoretical pI: Translated: 6.80; Mature: 6.80

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
2.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGALTYHFEAITPEPRDDVDRSNLRAVVACMKPAPERAGMEAMDAVEQRLRALLLAGLGG
CCCEEEEEEECCCCCCCCCCHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHCCCC
DQAAYHAFLTELTGRLRAFVRRRLYQLQDEVEDIVQETLLAVHNARHTYRAEEPLTAWVY
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHH
AIARYKLLDFLRSRSRHGATESLDDVADILCHSDDAPAHDARLDLSGLLEQLPDKQRLPI
HHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCCCCCHHHCCHHHHHHHCCCCCCCCE
LHVKLEGLSVAETARLTGLSESAVKVGIHRGLKALAAKARLFTS
EEEEECCCCHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure 
GALTYHFEAITPEPRDDVDRSNLRAVVACMKPAPERAGMEAMDAVEQRLRALLLAGLGG
CCEEEEEEECCCCCCCCCCHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHCCCC
DQAAYHAFLTELTGRLRAFVRRRLYQLQDEVEDIVQETLLAVHNARHTYRAEEPLTAWVY
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHH
AIARYKLLDFLRSRSRHGATESLDDVADILCHSDDAPAHDARLDLSGLLEQLPDKQRLPI
HHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCCCCCHHHCCHHHHHHHCCCCCCCCE
LHVKLEGLSVAETARLTGLSESAVKVGIHRGLKALAAKARLFTS
EEEEECCCCHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA