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The map label for this gene is ompW1 [H]

Identifier: 94312457

GI number: 94312457

Start: 3818436

End: 3819161

Strand: Reverse

Name: ompW1 [H]

Synonym: Rmet_3526

Alternate gene names: 94312457

Gene position: 3819161-3818436 (Counterclockwise)

Preceding gene: 94312458

Following gene: 94312455

Centisome position: 97.23

GC content: 60.74

Gene sequence:

>726_bases
ATGAAGACGATCTATAAGAAGATGCTGGTGGCAGGCGCCGCCATGGCACTGGCTGGTGTTGCACAGGCTCAATCGGCAGG
CAGCAATATGGTCAGTTTTGGCTGGATGCGGATCATGCCGACGGGCCACTCGGAATTTCTGACCATTGATTCGATTGGTG
GCTTCCCGGTCGGCGCGCAGAAGCCGAACACGGGCGCGACGATCGATTCGGCCGATACGCTCGGCCTGACCTTCGCCCAC
TTCTTTACCGACAATATTTCGGCGGAATTCGTGCTCGGCGTGCCGCCGAAGCACAACGTGAGCGGCGATCGCGGCTACGA
GAAGTACGGCAAGCTGGGCGAAGTGCGCCAGTGGAGCCCGGCCATCGTGGCCAAGTGGCACTTCTTCGACGCCAAGACCA
AGTTCCGCCCGTACGTCGGTCTCGGTGTGAACTACACCTGGTTCACGGGCGAATCCGTGACCAACCAGTCGTTCGTGCAA
GGTGAATTCGGTCCGGGCTCGCACATGACCGCAAGCGCCAAGTCGTCGTGGAACCCGGTGTTCAACGTCGGCGCCAGCTA
CGCCGTGACCGACAACTGGTTCGTCGGCTTCTCGGTGTCGTACGTGCCGGTCACCACCACGGCCAATTTCACGACGACGC
TGGCCAACGGCGCGCAGGTCCAGTCGCACACGAAGATCAAGATCGATCCGGTCGTGACGTACCTGAACGTCGGCTATCGC
TTCTGA

Upstream 100 bases:

>100_bases
TCTACCGTTGGGTAACCTGTTTGAAACAGTCGGGGCCCGGCGCGCAGGATAATGCGCCCCTAGCAGTGCGTTGTAACCAA
AGGACGGAGTAAGAGGAACA

Downstream 100 bases:

>100_bases
GCCTTTCCGGCGCGGACGTGAAAAAGGGCACCCTCGGGTGCCCTTTCTTGTTTGGCGGCGACGATCAGCTTGCCGACTTG
ACCGGGTAGCCGGCACCTTC

Product: porin, OmpW family

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 241; Mature: 241

Protein sequence:

>241_residues
MKTIYKKMLVAGAAMALAGVAQAQSAGSNMVSFGWMRIMPTGHSEFLTIDSIGGFPVGAQKPNTGATIDSADTLGLTFAH
FFTDNISAEFVLGVPPKHNVSGDRGYEKYGKLGEVRQWSPAIVAKWHFFDAKTKFRPYVGLGVNYTWFTGESVTNQSFVQ
GEFGPGSHMTASAKSSWNPVFNVGASYAVTDNWFVGFSVSYVPVTTTANFTTTLANGAQVQSHTKIKIDPVVTYLNVGYR
F

Sequences:

>Translated_241_residues
MKTIYKKMLVAGAAMALAGVAQAQSAGSNMVSFGWMRIMPTGHSEFLTIDSIGGFPVGAQKPNTGATIDSADTLGLTFAH
FFTDNISAEFVLGVPPKHNVSGDRGYEKYGKLGEVRQWSPAIVAKWHFFDAKTKFRPYVGLGVNYTWFTGESVTNQSFVQ
GEFGPGSHMTASAKSSWNPVFNVGASYAVTDNWFVGFSVSYVPVTTTANFTTTLANGAQVQSHTKIKIDPVVTYLNVGYR
F
>Mature_241_residues
MKTIYKKMLVAGAAMALAGVAQAQSAGSNMVSFGWMRIMPTGHSEFLTIDSIGGFPVGAQKPNTGATIDSADTLGLTFAH
FFTDNISAEFVLGVPPKHNVSGDRGYEKYGKLGEVRQWSPAIVAKWHFFDAKTKFRPYVGLGVNYTWFTGESVTNQSFVQ
GEFGPGSHMTASAKSSWNPVFNVGASYAVTDNWFVGFSVSYVPVTTTANFTTTLANGAQVQSHTKIKIDPVVTYLNVGYR
F

Specific function: Acts as a receptor for colicin S4 [H]

COG id: COG3047

COG function: function code M; Outer membrane protein W

Gene ontology:

Cell location: Cell outer membrane [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the OmpW/AlkL family [H]

Homologues:

Organism=Escherichia coli, GI1787510, Length=238, Percent_Identity=34.0336134453782, Blast_Score=114, Evalue=5e-27,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011250
- InterPro:   IPR005618 [H]

Pfam domain/function: PF03922 OmpW [H]

EC number: NA

Molecular weight: Translated: 26069; Mature: 26069

Theoretical pI: Translated: 9.63; Mature: 9.63

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKTIYKKMLVAGAAMALAGVAQAQSAGSNMVSFGWMRIMPTGHSEFLTIDSIGGFPVGAQ
CHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECEEEEEECCCCCEEEEECCCCCCCCCC
KPNTGATIDSADTLGLTFAHFFTDNISAEFVLGVPPKHNVSGDRGYEKYGKLGEVRQWSP
CCCCCCEECCCCCCCEEEEEEHHCCCCEEEEEECCCCCCCCCCCCHHHHCCCCCCCCCCC
AIVAKWHFFDAKTKFRPYVGLGVNYTWFTGESVTNQSFVQGEFGPGSHMTASAKSSWNPV
EEEEEEEEECCCCCCCCEEECCCEEEEECCCCCCCCCEEECCCCCCCCEEECCCCCCCCE
FNVGASYAVTDNWFVGFSVSYVPVTTTANFTTTLANGAQVQSHTKIKIDPVVTYLNVGYR
EECCCCEEEECCEEEEEEEEEEEEEECCCEEEEECCCCEECCCCEEEEEEEEEEEECCCC
F
C
>Mature Secondary Structure
MKTIYKKMLVAGAAMALAGVAQAQSAGSNMVSFGWMRIMPTGHSEFLTIDSIGGFPVGAQ
CHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECEEEEEECCCCCEEEEECCCCCCCCCC
KPNTGATIDSADTLGLTFAHFFTDNISAEFVLGVPPKHNVSGDRGYEKYGKLGEVRQWSP
CCCCCCEECCCCCCCEEEEEEHHCCCCEEEEEECCCCCCCCCCCCHHHHCCCCCCCCCCC
AIVAKWHFFDAKTKFRPYVGLGVNYTWFTGESVTNQSFVQGEFGPGSHMTASAKSSWNPV
EEEEEEEEECCCCCCCCEEECCCEEEEECCCCCCCCCEEECCCCCCCCEEECCCCCCCCE
FNVGASYAVTDNWFVGFSVSYVPVTTTANFTTTLANGAQVQSHTKIKIDPVVTYLNVGYR
EECCCCEEEECCEEEEEEEEEEEEEECCCEEEEECCCCEECCCCEEEEEEEEEEEECCCC
F
C

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 3058546; 9097039; 9278503; 9629924; 10348872 [H]