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The map label for this gene is glxA [H]

Identifier: 94312396

GI number: 94312396

Start: 3742018

End: 3743043

Strand: Reverse

Name: glxA [H]

Synonym: Rmet_3465

Alternate gene names: 94312396

Gene position: 3743043-3742018 (Counterclockwise)

Preceding gene: 94312397

Following gene: 94312391

Centisome position: 95.29

GC content: 68.32

Gene sequence:

>1026_bases
ATGCACCCAGCCCCCGAACCGCCGCGCGTTGTCGTCATCGTCGCGCCCGATCCTGCGCAGGAACTCGACGTCACCGGGCC
GACCGCCGTGTTCGGTGCCGCCAACAAGCTGTGCGGCCGTGAGTCGCCGCCCTACGACCTGCACGTGGTCAGCGTCAGCG
ACGATGCCATCGTGCGTACGGAGAGCGGTCTGCGCATATTGGCGGACGCGCCGTACCACCGCATCGTCGAGCAGGTGGGC
AGACCGATCGACACGCTGCTGATCTCGGGCGGCTCGGGCCATGCACGGGCCGCCGAGGACGAGCAGCTGATCGGCTGGCT
ACGCACGCAGGCGACGCAGGTGCGGCGGATGGGCGCGGTTTGCACCGGGGCGTTCGTGCTGGCCGGTACGGGGCTGCTCG
ACGCGCAGCGCGTGACCACTCACTGGCGTCATGCCGAGCGGCTGGCCCATCGGCACCCGGAACTGGACGTCGATGCCGAT
CCGATCTGGATTCGCGCGGGTCGCTTTTATACCTCGGCCGGCGTCTCGGCTGGCATGGACCTGTCGCTCGCACTGGTCGA
GGAAGACCTGGGCCACACGGTGTCGCTGGACGTCGCGCGGGATCTGGTGCTGTTCCTCCGGCGTCCGGGCAATCAGGCGC
AGTTTTCGACGGTGCTGCGGGCGCAAGCGGCGCAAAGCCCTGAACTGCGAGCGTTGCAGACATGGATTGCCGATAACCTC
GGCCGGGACCTGTCGGTCGGCGTGCTGGCGGAGCAGGTGGCGATGAGTCCGCGCAATTTTGCGCGGGTCTTCGTGAAGCA
GGTGGGAGACACGCCAGCGCGCTATGTCGAGCGGCTTCGCGTGGAAGCGGTGCGGCGTCTGCTGGAAGGGGGCGATCGGC
GGCTGGAAGCCATCGCGCATGTCACCGGATTCGGTAATGCCGATGTCATGCGTCAGGCATTCCAGCGCCATGTGCAGACG
ACGCCCGAGCGATACCGGGCGGCATTCCGCGGGGAAGGGCAGGCAGTGGCGCTGGCGGCTGCGTAG

Upstream 100 bases:

>100_bases
GGCTCTTGCCGTGACGCTGGCGTGGCAGCGTCAGGAGCGGCTGGCGCCGTCGGCGGCGGGCGTATGATCGGCGCATCCGC
GCCCAATCACTTGCCCAGCC

Downstream 100 bases:

>100_bases
CCACCAGCGCTCTGCGGGGCTTAGCGGGTGCCTTGCAGGGCCGCGATGCGCGATTCGATCGGCGGGTGGCTTGCAAACAG
CGCCAGCCACGACTTGCCGC

Product: transcriptional regulator, AraC-family

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 341; Mature: 341

Protein sequence:

>341_residues
MHPAPEPPRVVVIVAPDPAQELDVTGPTAVFGAANKLCGRESPPYDLHVVSVSDDAIVRTESGLRILADAPYHRIVEQVG
RPIDTLLISGGSGHARAAEDEQLIGWLRTQATQVRRMGAVCTGAFVLAGTGLLDAQRVTTHWRHAERLAHRHPELDVDAD
PIWIRAGRFYTSAGVSAGMDLSLALVEEDLGHTVSLDVARDLVLFLRRPGNQAQFSTVLRAQAAQSPELRALQTWIADNL
GRDLSVGVLAEQVAMSPRNFARVFVKQVGDTPARYVERLRVEAVRRLLEGGDRRLEAIAHVTGFGNADVMRQAFQRHVQT
TPERYRAAFRGEGQAVALAAA

Sequences:

>Translated_341_residues
MHPAPEPPRVVVIVAPDPAQELDVTGPTAVFGAANKLCGRESPPYDLHVVSVSDDAIVRTESGLRILADAPYHRIVEQVG
RPIDTLLISGGSGHARAAEDEQLIGWLRTQATQVRRMGAVCTGAFVLAGTGLLDAQRVTTHWRHAERLAHRHPELDVDAD
PIWIRAGRFYTSAGVSAGMDLSLALVEEDLGHTVSLDVARDLVLFLRRPGNQAQFSTVLRAQAAQSPELRALQTWIADNL
GRDLSVGVLAEQVAMSPRNFARVFVKQVGDTPARYVERLRVEAVRRLLEGGDRRLEAIAHVTGFGNADVMRQAFQRHVQT
TPERYRAAFRGEGQAVALAAA
>Mature_341_residues
MHPAPEPPRVVVIVAPDPAQELDVTGPTAVFGAANKLCGRESPPYDLHVVSVSDDAIVRTESGLRILADAPYHRIVEQVG
RPIDTLLISGGSGHARAAEDEQLIGWLRTQATQVRRMGAVCTGAFVLAGTGLLDAQRVTTHWRHAERLAHRHPELDVDAD
PIWIRAGRFYTSAGVSAGMDLSLALVEEDLGHTVSLDVARDLVLFLRRPGNQAQFSTVLRAQAAQSPELRALQTWIADNL
GRDLSVGVLAEQVAMSPRNFARVFVKQVGDTPARYVERLRVEAVRRLLEGGDRRLEAIAHVTGFGNADVMRQAFQRHVQT
TPERYRAAFRGEGQAVALAAA

Specific function: Positive Activator Of Genes Required For L-Rhamnose Utilization, Probably Of The Rhamnose Transporter Gene (Rhat). [C]

COG id: COG4977

COG function: function code K; Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH araC/xylS-type DNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR018062
- InterPro:   IPR020449
- InterPro:   IPR018060
- InterPro:   IPR002818 [H]

Pfam domain/function: PF01965 DJ-1_PfpI; PF00165 HTH_AraC [H]

EC number: NA

Molecular weight: Translated: 37136; Mature: 37136

Theoretical pI: Translated: 7.13; Mature: 7.13

Prosite motif: PS01124 HTH_ARAC_FAMILY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
2.1 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
2.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MHPAPEPPRVVVIVAPDPAQELDVTGPTAVFGAANKLCGRESPPYDLHVVSVSDDAIVRT
CCCCCCCCEEEEEECCCCHHHCCCCCCHHHHHHHHHHHCCCCCCCEEEEEEECCCEEEEE
ESGLRILADAPYHRIVEQVGRPIDTLLISGGSGHARAAEDEQLIGWLRTQATQVRRMGAV
CCCCEEEECCCHHHHHHHHCCCEEHEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH
CTGAFVLAGTGLLDAQRVTTHWRHAERLAHRHPELDVDADPIWIRAGRFYTSAGVSAGMD
HHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEECCCEEECCCCCCCCC
LSLALVEEDLGHTVSLDVARDLVLFLRRPGNQAQFSTVLRAQAAQSPELRALQTWIADNL
EEEEEEHHHCCCEEEHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHC
GRDLSVGVLAEQVAMSPRNFARVFVKQVGDTPARYVERLRVEAVRRLLEGGDRRLEAIAH
CCCCHHHHHHHHHHCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHH
VTGFGNADVMRQAFQRHVQTTPERYRAAFRGEGQAVALAAA
HHCCCCHHHHHHHHHHHHCCCHHHHHHHHCCCCCEEEEEEC
>Mature Secondary Structure
MHPAPEPPRVVVIVAPDPAQELDVTGPTAVFGAANKLCGRESPPYDLHVVSVSDDAIVRT
CCCCCCCCEEEEEECCCCHHHCCCCCCHHHHHHHHHHHCCCCCCCEEEEEEECCCEEEEE
ESGLRILADAPYHRIVEQVGRPIDTLLISGGSGHARAAEDEQLIGWLRTQATQVRRMGAV
CCCCEEEECCCHHHHHHHHCCCEEHEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH
CTGAFVLAGTGLLDAQRVTTHWRHAERLAHRHPELDVDADPIWIRAGRFYTSAGVSAGMD
HHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEECCCEEECCCCCCCCC
LSLALVEEDLGHTVSLDVARDLVLFLRRPGNQAQFSTVLRAQAAQSPELRALQTWIADNL
EEEEEEHHHCCCEEEHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHC
GRDLSVGVLAEQVAMSPRNFARVFVKQVGDTPARYVERLRVEAVRRLLEGGDRRLEAIAH
CCCCHHHHHHHHHHCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHH
VTGFGNADVMRQAFQRHVQTTPERYRAAFRGEGQAVALAAA
HHCCCCHHHHHHHHHHHHCCCHHHHHHHHCCCCCEEEEEEC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11481430 [H]