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The map label for this gene is rnk [H]

Identifier: 94312386

GI number: 94312386

Start: 3731969

End: 3732406

Strand: Reverse

Name: rnk [H]

Synonym: Rmet_3455

Alternate gene names: 94312386

Gene position: 3732406-3731969 (Counterclockwise)

Preceding gene: 335055670

Following gene: 94312385

Centisome position: 95.02

GC content: 65.75

Gene sequence:

>438_bases
ATGGCCAAGACCAAAAACACGACCGCCGCGCCGTCGCGCCCGGCAACCCTTTACCTGACCGAACTCGACGTCACGCGCCT
CGAGGGAATTGCCAGCCGTGCCGGCACCGCCGAACTCGACGAGATGCTGGATGCACTACTGGAGCGCGCGGCCATTGTGT
CGCCCGACGCGATCCCGAAGGATGTCGTGACGATGAATTCACGTGTGGTTTGTGCGCTCGAAGGCGAGGCCAAGCCGCGT
GACTGGACCCTGGTGTACCCGGACGATGCCGATCTGGCCACTGGCCGGTTATCGGTGCTGTCGCCAATTGGCCAGGCACT
GCTGGGTGCCCGCTCTGGGGACACCGTCGACTACCGCCTGCCCGACGGCCGCGCGCAACGCGTGACCATCGTGGAGATCG
CGTTCCAGCCCGAGGCCAGCGGCCAGTTCACGCTTTGA

Upstream 100 bases:

>100_bases
GTTGCTGCATTCGCTGCATTACCAAGCTGTGTCCGTCCGGCGCGCGTGAAGTTGCGCCGGCCAATCGATTCTGGATTTCA
CTTCCGTGAGAGGCATTGCC

Downstream 100 bases:

>100_bases
TCCTTCCCCCGGCCAGCTACCCACCGTGCGCCCGAAGCGGCGCGCGCGGGTAGCCGCGCCGCCTGGCAGTACCGAACGGT
AAGCACCGTTCGGTCAGGCA

Product: regulator of nucleoside diphosphate kinase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 145; Mature: 144

Protein sequence:

>145_residues
MAKTKNTTAAPSRPATLYLTELDVTRLEGIASRAGTAELDEMLDALLERAAIVSPDAIPKDVVTMNSRVVCALEGEAKPR
DWTLVYPDDADLATGRLSVLSPIGQALLGARSGDTVDYRLPDGRAQRVTIVEIAFQPEASGQFTL

Sequences:

>Translated_145_residues
MAKTKNTTAAPSRPATLYLTELDVTRLEGIASRAGTAELDEMLDALLERAAIVSPDAIPKDVVTMNSRVVCALEGEAKPR
DWTLVYPDDADLATGRLSVLSPIGQALLGARSGDTVDYRLPDGRAQRVTIVEIAFQPEASGQFTL
>Mature_144_residues
AKTKNTTAAPSRPATLYLTELDVTRLEGIASRAGTAELDEMLDALLERAAIVSPDAIPKDVVTMNSRVVCALEGEAKPRD
WTLVYPDDADLATGRLSVLSPIGQALLGARSGDTVDYRLPDGRAQRVTIVEIAFQPEASGQFTL

Specific function: Rnk and sspA can functionally replace P.aeruginosa alginate regulatory gene algR2 [H]

COG id: COG0782

COG function: function code K; Transcription elongation factor

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI1786827, Length=136, Percent_Identity=40.4411764705882, Blast_Score=97, Evalue=5e-22,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001437 [H]

Pfam domain/function: PF01272 GreA_GreB [H]

EC number: NA

Molecular weight: Translated: 15513; Mature: 15382

Theoretical pI: Translated: 4.40; Mature: 4.40

Prosite motif: PS00830 GREAB_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
2.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAKTKNTTAAPSRPATLYLTELDVTRLEGIASRAGTAELDEMLDALLERAAIVSPDAIPK
CCCCCCCCCCCCCCCEEEEEECCHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCCCCC
DVVTMNSRVVCALEGEAKPRDWTLVYPDDADLATGRLSVLSPIGQALLGARSGDTVDYRL
CEEECCCEEEEEECCCCCCCCEEEECCCCCCCCCCHHHHHHHHHHHHHCCCCCCEEEEEC
PDGRAQRVTIVEIAFQPEASGQFTL
CCCCCCEEEEEEEEECCCCCCCCCC
>Mature Secondary Structure 
AKTKNTTAAPSRPATLYLTELDVTRLEGIASRAGTAELDEMLDALLERAAIVSPDAIPK
CCCCCCCCCCCCCCEEEEEECCHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCCCCC
DVVTMNSRVVCALEGEAKPRDWTLVYPDDADLATGRLSVLSPIGQALLGARSGDTVDYRL
CEEECCCEEEEEECCCCCCCCEEEECCCCCCCCCCHHHHHHHHHHHHHCCCCCCEEEEEC
PDGRAQRVTIVEIAFQPEASGQFTL
CCCCCCEEEEEEEEECCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]