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The map label for this gene is soxB [H]

Identifier: 94312348

GI number: 94312348

Start: 3697844

End: 3699568

Strand: Reverse

Name: soxB [H]

Synonym: Rmet_3417

Alternate gene names: 94312348

Gene position: 3699568-3697844 (Counterclockwise)

Preceding gene: 94312349

Following gene: 94312346

Centisome position: 94.18

GC content: 65.86

Gene sequence:

>1725_bases
ATGAATCGACGCGAGTTCCTGCAGGTGCTGGCGGTGGCCGGCGCCGGCGGCATGGCTTTCCCGGGCGGCGACGCACAGGC
CGCGCGCGCCGCGCAACAGTTCTACGACGTGCCGCGCTTCGGCAACGTCCACCTGCTGCACTTCACCGATTGCCACGCAC
AACTGCGCCCGGTGCATTTTCGCGAACCCAGTGTGAACCTCGGCGTGGCGGAGTGGGCAGGCAAGCCGCCGCATCTGGTG
GGCAAGGCCTTTCTGCGCGAGTACGGCATCCGCCCCGGCACCCCCGAAGCGCACGCGTTCACCAGCCTCGATTTCACCGA
AGCCGCGCGCCGCTACGGCAAGGTGGGCGGGTTTTCCCATCTCTCTACGCTGATCCAGCGCATGAAGGCCAGCCGGCCCG
GTGCGTTGCTGCTCGATGGCGGCGATACCTGGCAGGGCTCGGCCACGGCGCTGTGGACCAAGGGCCAGGACATGGTCGAC
GCGGCGCTGCAACTGGGCGTTGACGTGATGACGCCGCACTGGGAAATGACGCTCGGCGCCGAGCGCGTGAAGCAGATCGT
CGACAACGACTTCAAGGGCCGCGTCTCGTTCCTGGCGCAGAACATCAAGACCAACGACTTCGGCGATCCGGTCTTCGACC
CGTACGTGATCCGCGACATGAACGGCGTGGCCGTAGCGATCATCGGGCAGGCCTTCCCGTACACGCCGATCGCCAATCCG
CGCTACTTCGTGCCGGACTGGACCTTCGGCATCCAGGAAGAAAACCTCCAACAGGTGATCGACGATGCGCGTTCCAAGGG
CGCGGAGGTAGTGGTTCTGCTGTCGCACAACGGCATGGACGTCGACCTCAAGCTCGCCTCGCGGGTGCGCGGCCTCGACG
CGATCCTCGGCGGCCACACGCATGACGGCGTGCCCAAGCCAGTGCAGGTCAGGAATTCGGGCGGTGTGACGCTGGTGACC
AACGCGGGCTCCAACGGCAAGTTCCTCGGCGTGCTCGACTTCGACGTCCGCAACGGCAAGGTGGCCGATTTCCGCTACAA
ACTGCTGCCGGTCTTTGCGGACTACCTGCCGGCCGACCCCGCGATGGAGGCACTGATCACCAAGGTACGTGCCCCGTACG
AGTCCAGGCTCAGCGAGGTACTGGCGATCAACCGCGGCCTGCTGTACCGACGCGGCAACTTCAACGGCACCTTCGACCAG
CTCATCCTGGACGGCCTGATGGCCGTGCAGGACGCCGAAATCGCGTTCTCCCCCGGTTTCCGCTGGGGCACCACGCTGCT
GCCCGGCGAGAACATCACGATGGAAGCCCTGATGGACCAGACGGCCGTCACGTACCCGTACACGACGGTGACGCCGATGA
CCGCCGAGACCATCAAGACCATCCTCGAGGACGTGGCCGACAACCTGTTCAACCCCGATCCCTACTACCAGCAGGGCGGC
GACATGGTGCGCGTGGGCGGGCTGCAATACACGATCGACCCCAACCAGCCGATCGGCAAGCGGATCACCGACATGCGGCT
GGGCGGCAAGCCGCTGGAAACCGGCAAGACCTACAAGGTGGCCGGCTGGGCGCCGGTATCAGAAGAAGCCCGCCAGGCGG
GTGGGGCGCCAATCTGGGATGTGATGGCCCAGTGGCTGCGGACAAACAAGGAAGTCAGCGCTCGCCCACTGAACCTGCCG
ACCGTGCGCGGCATGAGCGGCAACCCGGGAATAACGACCACCTGA

Upstream 100 bases:

>100_bases
CGTGGTGCAGAAGGAAGTGGGCGAGATGCTCGACGATGACGTCGCCGCCCTGGCGCGCTATGGCAAACGCTGAGCGCGCA
CGACTCGGACGGAAATCAGT

Downstream 100 bases:

>100_bases
CATCGACGCAACGGTTGCGCCAATGCGATTGAAAGGCCGCCTGAAGGCAGCTACAATCATCCGCTACGGGCCGATAGCTC
AGCTGGGAGAGCGCTGCGTT

Product: sulfur/thiosulfate oxidation protein SoxB

Products: NA

Alternate protein names: UDP-sugar hydrolase; UDP-sugar diphosphatase; UDP-sugar pyrophosphatase; 5'-nucleotidase; 5'-NT [H]

Number of amino acids: Translated: 574; Mature: 574

Protein sequence:

>574_residues
MNRREFLQVLAVAGAGGMAFPGGDAQAARAAQQFYDVPRFGNVHLLHFTDCHAQLRPVHFREPSVNLGVAEWAGKPPHLV
GKAFLREYGIRPGTPEAHAFTSLDFTEAARRYGKVGGFSHLSTLIQRMKASRPGALLLDGGDTWQGSATALWTKGQDMVD
AALQLGVDVMTPHWEMTLGAERVKQIVDNDFKGRVSFLAQNIKTNDFGDPVFDPYVIRDMNGVAVAIIGQAFPYTPIANP
RYFVPDWTFGIQEENLQQVIDDARSKGAEVVVLLSHNGMDVDLKLASRVRGLDAILGGHTHDGVPKPVQVRNSGGVTLVT
NAGSNGKFLGVLDFDVRNGKVADFRYKLLPVFADYLPADPAMEALITKVRAPYESRLSEVLAINRGLLYRRGNFNGTFDQ
LILDGLMAVQDAEIAFSPGFRWGTTLLPGENITMEALMDQTAVTYPYTTVTPMTAETIKTILEDVADNLFNPDPYYQQGG
DMVRVGGLQYTIDPNQPIGKRITDMRLGGKPLETGKTYKVAGWAPVSEEARQAGGAPIWDVMAQWLRTNKEVSARPLNLP
TVRGMSGNPGITTT

Sequences:

>Translated_574_residues
MNRREFLQVLAVAGAGGMAFPGGDAQAARAAQQFYDVPRFGNVHLLHFTDCHAQLRPVHFREPSVNLGVAEWAGKPPHLV
GKAFLREYGIRPGTPEAHAFTSLDFTEAARRYGKVGGFSHLSTLIQRMKASRPGALLLDGGDTWQGSATALWTKGQDMVD
AALQLGVDVMTPHWEMTLGAERVKQIVDNDFKGRVSFLAQNIKTNDFGDPVFDPYVIRDMNGVAVAIIGQAFPYTPIANP
RYFVPDWTFGIQEENLQQVIDDARSKGAEVVVLLSHNGMDVDLKLASRVRGLDAILGGHTHDGVPKPVQVRNSGGVTLVT
NAGSNGKFLGVLDFDVRNGKVADFRYKLLPVFADYLPADPAMEALITKVRAPYESRLSEVLAINRGLLYRRGNFNGTFDQ
LILDGLMAVQDAEIAFSPGFRWGTTLLPGENITMEALMDQTAVTYPYTTVTPMTAETIKTILEDVADNLFNPDPYYQQGG
DMVRVGGLQYTIDPNQPIGKRITDMRLGGKPLETGKTYKVAGWAPVSEEARQAGGAPIWDVMAQWLRTNKEVSARPLNLP
TVRGMSGNPGITTT
>Mature_574_residues
MNRREFLQVLAVAGAGGMAFPGGDAQAARAAQQFYDVPRFGNVHLLHFTDCHAQLRPVHFREPSVNLGVAEWAGKPPHLV
GKAFLREYGIRPGTPEAHAFTSLDFTEAARRYGKVGGFSHLSTLIQRMKASRPGALLLDGGDTWQGSATALWTKGQDMVD
AALQLGVDVMTPHWEMTLGAERVKQIVDNDFKGRVSFLAQNIKTNDFGDPVFDPYVIRDMNGVAVAIIGQAFPYTPIANP
RYFVPDWTFGIQEENLQQVIDDARSKGAEVVVLLSHNGMDVDLKLASRVRGLDAILGGHTHDGVPKPVQVRNSGGVTLVT
NAGSNGKFLGVLDFDVRNGKVADFRYKLLPVFADYLPADPAMEALITKVRAPYESRLSEVLAINRGLLYRRGNFNGTFDQ
LILDGLMAVQDAEIAFSPGFRWGTTLLPGENITMEALMDQTAVTYPYTTVTPMTAETIKTILEDVADNLFNPDPYYQQGG
DMVRVGGLQYTIDPNQPIGKRITDMRLGGKPLETGKTYKVAGWAPVSEEARQAGGAPIWDVMAQWLRTNKEVSARPLNLP
TVRGMSGNPGITTT

Specific function: Degradation of external UDP-glucose to uridine monophosphate and glucose-1-phosphate, which can then be used by the cell [H]

COG id: COG0737

COG function: function code F; 5'-nucleotidase/2',3'-cyclic phosphodiesterase and related esterases

Gene ontology:

Cell location: Periplasm (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the 5'-nucleotidase family [H]

Homologues:

None

Paralogues:

None

Copy number: 60 Molecules/Cell In: Stationary Phase, Rich Media (Based on E. coli). 20 Molecules/Cell In: Stationary Phase, Rich Media (Based on E. coli). [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR008334
- InterPro:   IPR006146
- InterPro:   IPR006179
- InterPro:   IPR004843 [H]

Pfam domain/function: PF02872 5_nucleotid_C; PF00149 Metallophos [H]

EC number: =3.6.1.45; =3.1.3.5 [H]

Molecular weight: Translated: 62730; Mature: 62730

Theoretical pI: Translated: 6.60; Mature: 6.60

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNRREFLQVLAVAGAGGMAFPGGDAQAARAAQQFYDVPRFGNVHLLHFTDCHAQLRPVHF
CCHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHCCCCCCCEEEEEEECCCCCCCCEEE
REPSVNLGVAEWAGKPPHLVGKAFLREYGIRPGTPEAHAFTSLDFTEAARRYGKVGGFSH
CCCCCCCCHHHHCCCCCHHHHHHHHHHCCCCCCCCCCCEEECCCHHHHHHHHHCCCCHHH
LSTLIQRMKASRPGALLLDGGDTWQGSATALWTKGQDMVDAALQLGVDVMTPHWEMTLGA
HHHHHHHHHCCCCCEEEEECCCCCCCCEEEEEECCHHHHHHHHHCCCEEECCCEEEECCH
ERVKQIVDNDFKGRVSFLAQNIKTNDFGDPVFDPYVIRDMNGVAVAIIGQAFPYTPIANP
HHHHHHHCCCCCHHHHHHHHHCCCCCCCCCCCCCEEEECCCCEEEEEECCCCCCCCCCCC
RYFVPDWTFGIQEENLQQVIDDARSKGAEVVVLLSHNGMDVDLKLASRVRGLDAILGGHT
CEECCCCCCCCCHHHHHHHHHHHHCCCCEEEEEEECCCCEEEEEHHHHHHHHHHHHCCCC
HDGVPKPVQVRNSGGVTLVTNAGSNGKFLGVLDFDVRNGKVADFRYKLLPVFADYLPADP
CCCCCCCEEEECCCCEEEEEECCCCCCEEEEEEEECCCCEEEHHHHHHHHHHHHHCCCCH
AMEALITKVRAPYESRLSEVLAINRGLLYRRGNFNGTFDQLILDGLMAVQDAEIAFSPGF
HHHHHHHHHCCCHHHHHHHHHHHHCCEEEECCCCCCHHHHHHHHHHHHHCCCCEEECCCC
RWGTTLLPGENITMEALMDQTAVTYPYTTVTPMTAETIKTILEDVADNLFNPDPYYQQGG
CCCCEECCCCCCCHHHHHCCCEEECCCCEECCCCHHHHHHHHHHHHHHCCCCCCHHHCCC
DMVRVGGLQYTIDPNQPIGKRITDMRLGGKPLETGKTYKVAGWAPVSEEARQAGGAPIWD
CEEEECCEEEEECCCCCHHHHHHHHCCCCCCCCCCCEEEEECCCCCCHHHHHCCCCCHHH
VMAQWLRTNKEVSARPLNLPTVRGMSGNPGITTT
HHHHHHHCCCCCCCCCCCCCEECCCCCCCCCCCC
>Mature Secondary Structure
MNRREFLQVLAVAGAGGMAFPGGDAQAARAAQQFYDVPRFGNVHLLHFTDCHAQLRPVHF
CCHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHCCCCCCCEEEEEEECCCCCCCCEEE
REPSVNLGVAEWAGKPPHLVGKAFLREYGIRPGTPEAHAFTSLDFTEAARRYGKVGGFSH
CCCCCCCCHHHHCCCCCHHHHHHHHHHCCCCCCCCCCCEEECCCHHHHHHHHHCCCCHHH
LSTLIQRMKASRPGALLLDGGDTWQGSATALWTKGQDMVDAALQLGVDVMTPHWEMTLGA
HHHHHHHHHCCCCCEEEEECCCCCCCCEEEEEECCHHHHHHHHHCCCEEECCCEEEECCH
ERVKQIVDNDFKGRVSFLAQNIKTNDFGDPVFDPYVIRDMNGVAVAIIGQAFPYTPIANP
HHHHHHHCCCCCHHHHHHHHHCCCCCCCCCCCCCEEEECCCCEEEEEECCCCCCCCCCCC
RYFVPDWTFGIQEENLQQVIDDARSKGAEVVVLLSHNGMDVDLKLASRVRGLDAILGGHT
CEECCCCCCCCCHHHHHHHHHHHHCCCCEEEEEEECCCCEEEEEHHHHHHHHHHHHCCCC
HDGVPKPVQVRNSGGVTLVTNAGSNGKFLGVLDFDVRNGKVADFRYKLLPVFADYLPADP
CCCCCCCEEEECCCCEEEEEECCCCCCEEEEEEEECCCCEEEHHHHHHHHHHHHHCCCCH
AMEALITKVRAPYESRLSEVLAINRGLLYRRGNFNGTFDQLILDGLMAVQDAEIAFSPGF
HHHHHHHHHCCCHHHHHHHHHHHHCCEEEECCCCCCHHHHHHHHHHHHHCCCCEEECCCC
RWGTTLLPGENITMEALMDQTAVTYPYTTVTPMTAETIKTILEDVADNLFNPDPYYQQGG
CCCCEECCCCCCCHHHHHCCCEEECCCCEECCCCHHHHHHHHHHHHHHCCCCCCHHHCCC
DMVRVGGLQYTIDPNQPIGKRITDMRLGGKPLETGKTYKVAGWAPVSEEARQAGGAPIWD
CEEEECCEEEEECCCCCHHHHHHHHCCCCCCCCCCCEEEEECCCCCCHHHHHCCCCCHHH
VMAQWLRTNKEVSARPLNLPTVRGMSGNPGITTT
HHHHHHHCCCCCCCCCCCCCEECCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA