| Definition | Cupriavidus metallidurans CH34 chromosome, complete genome. |
|---|---|
| Accession | NC_007973 |
| Length | 3,928,089 |
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The map label for this gene is dppF [H]
Identifier: 94312085
GI number: 94312085
Start: 3417966
End: 3419030
Strand: Reverse
Name: dppF [H]
Synonym: Rmet_3154
Alternate gene names: 94312085
Gene position: 3419030-3417966 (Counterclockwise)
Preceding gene: 94312086
Following gene: 94312083
Centisome position: 87.04
GC content: 63.94
Gene sequence:
>1065_bases ATGAGCGCGAATGTGATGGATACCCCGGGCGCATTGGCCTCCGGCGTGGCGGCGGAGACGGCCATGCCGCCGGCACCGCT GCTGGAACTGCGAGGCGTCTCCAAGCGCTTCGTCAAGTCGCTCGACATCGCGGCGAAAGTCGCCAATGTATTCGGCGCGA AGCAGCGCGTGGAGATCGTTCATGCGGTGGATCGTGTCGACCTCTCTATCCGCGCTGGCGAGGTTGTTGGTCTCGTGGGG GAATCGGGCTGCGGCAAGTCCACGCTGGGCCGCATGGCCGTGGGCCTGCACACGCTGACTGAAGGGGAGCGATTCTGGCG CGGTACGGATCTCGACCGGCTGCCGCCAGACCGGAAACGCGAGAAGCAGCTTGCGATCCAGATGATCTTCCAGGACCCGT ACGCGTCGCTGAATCCTCGGATGCGCGTGCTCGACATCGTCGGCGAGGCGCCTGTCGTTCACGGCATGGTGGAGAAGGGC GCGCAGAAGGCGTATGTGGAAGACATGCTCGTGCGCGTGGGGATGGATCCGACCGTGCTGCGCCGCTTCCCGCATCAGTT CTCGGGCGGTCAGCGCGCGCGGATCGGCATTGCGCGCGCGTTGGCGGTCAAGCCGGAATTCCTGGTCTGCGATGAATCGG TGGCGGCGCTCGACGTATCGATCCAGGCCCAGGTGCTGAACCTGTTCATGCGCCTGCGCGAAGAACTGAACCTCACGTAC CTGTTTATCAGCCATGATCTGGGCGTGGTCAAGCACATTAGCGACCGCGTGGTGATCATGTATCTGGGACGTGTGGTGGA GTCCGCGCCGACCGAGGAGGTGTTCGCCGCGCCGAATCATCCCTATACGCAGGCGTTGCTGGCCGAGGCGCCGAAGCTTG AGGTCGGCAAGAAGACTTACGTGGCGATCCGGGGCGAGATTCCGTCGCCGCTGAATCCGCCCACCGGCTGCCACTTTCAT CCGCGCTGCCCGCATGCGATGCCACGTTGCAAGACCGAGCAGCCGGTACTGAAGGAGATCGCGCCGCTGAGGTTTTCAGC TTGCCATCTGAACGATCAGACCTGA
Upstream 100 bases:
>100_bases ATGCCACGGAGATCTGTGCCACCGAGCCGCCGCTTGAACTGTCGCCAGATGGGAGGCAGTTGCGCTGCTTCCATCCGGTA CACGCCCAGCAGGAGGCCGC
Downstream 100 bases:
>100_bases CTGGGTGAGTGTTTTCTCCCCTCTCACGCAGTGCGGGAGAGGGGAGCAAGAAACGCCGTCAGCGAATCACCACGCCCCGC GAGTTGATGATCGTCATCTC
Product: dipeptide ABC transporter ATP-binding protein
Products: ADP; phosphate; oligopeptides [Cytoplasm] [C]
Alternate protein names: NA
Number of amino acids: Translated: 354; Mature: 353
Protein sequence:
>354_residues MSANVMDTPGALASGVAAETAMPPAPLLELRGVSKRFVKSLDIAAKVANVFGAKQRVEIVHAVDRVDLSIRAGEVVGLVG ESGCGKSTLGRMAVGLHTLTEGERFWRGTDLDRLPPDRKREKQLAIQMIFQDPYASLNPRMRVLDIVGEAPVVHGMVEKG AQKAYVEDMLVRVGMDPTVLRRFPHQFSGGQRARIGIARALAVKPEFLVCDESVAALDVSIQAQVLNLFMRLREELNLTY LFISHDLGVVKHISDRVVIMYLGRVVESAPTEEVFAAPNHPYTQALLAEAPKLEVGKKTYVAIRGEIPSPLNPPTGCHFH PRCPHAMPRCKTEQPVLKEIAPLRFSACHLNDQT
Sequences:
>Translated_354_residues MSANVMDTPGALASGVAAETAMPPAPLLELRGVSKRFVKSLDIAAKVANVFGAKQRVEIVHAVDRVDLSIRAGEVVGLVG ESGCGKSTLGRMAVGLHTLTEGERFWRGTDLDRLPPDRKREKQLAIQMIFQDPYASLNPRMRVLDIVGEAPVVHGMVEKG AQKAYVEDMLVRVGMDPTVLRRFPHQFSGGQRARIGIARALAVKPEFLVCDESVAALDVSIQAQVLNLFMRLREELNLTY LFISHDLGVVKHISDRVVIMYLGRVVESAPTEEVFAAPNHPYTQALLAEAPKLEVGKKTYVAIRGEIPSPLNPPTGCHFH PRCPHAMPRCKTEQPVLKEIAPLRFSACHLNDQT >Mature_353_residues SANVMDTPGALASGVAAETAMPPAPLLELRGVSKRFVKSLDIAAKVANVFGAKQRVEIVHAVDRVDLSIRAGEVVGLVGE SGCGKSTLGRMAVGLHTLTEGERFWRGTDLDRLPPDRKREKQLAIQMIFQDPYASLNPRMRVLDIVGEAPVVHGMVEKGA QKAYVEDMLVRVGMDPTVLRRFPHQFSGGQRARIGIARALAVKPEFLVCDESVAALDVSIQAQVLNLFMRLREELNLTYL FISHDLGVVKHISDRVVIMYLGRVVESAPTEEVFAAPNHPYTQALLAEAPKLEVGKKTYVAIRGEIPSPLNPPTGCHFHP RCPHAMPRCKTEQPVLKEIAPLRFSACHLNDQT
Specific function: This protein is a component of an oligopeptide permease, a binding protein-dependent transport system. This APP system can completely substitute for the OPP system in both sporulation and genetic competence, though, unlike OPP, is incapable of transportin
COG id: COG4608
COG function: function code E; ABC-type oligopeptide transport system, ATPase component
Gene ontology:
Cell location: Cell membrane; Peripheral membrane protein [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 ABC transporter domain [H]
Homologues:
Organism=Homo sapiens, GI171184400, Length=258, Percent_Identity=29.4573643410853, Blast_Score=79, Evalue=8e-15, Organism=Homo sapiens, GI9961252, Length=217, Percent_Identity=29.4930875576037, Blast_Score=75, Evalue=6e-14, Organism=Homo sapiens, GI4505771, Length=211, Percent_Identity=29.8578199052133, Blast_Score=75, Evalue=7e-14, Organism=Homo sapiens, GI9961250, Length=211, Percent_Identity=29.8578199052133, Blast_Score=75, Evalue=7e-14, Organism=Homo sapiens, GI42741659, Length=214, Percent_Identity=30.8411214953271, Blast_Score=75, Evalue=8e-14, Organism=Homo sapiens, GI148612844, Length=225, Percent_Identity=28.8888888888889, Blast_Score=75, Evalue=1e-13, Organism=Homo sapiens, GI255708477, Length=225, Percent_Identity=28.8888888888889, Blast_Score=74, Evalue=2e-13, Organism=Homo sapiens, GI156105685, Length=210, Percent_Identity=30, Blast_Score=66, Evalue=5e-11, Organism=Escherichia coli, GI1787500, Length=284, Percent_Identity=50, Blast_Score=280, Evalue=8e-77, Organism=Escherichia coli, GI1789962, Length=296, Percent_Identity=44.9324324324324, Blast_Score=271, Evalue=5e-74, Organism=Escherichia coli, GI1787758, Length=281, Percent_Identity=42.7046263345196, Blast_Score=238, Evalue=4e-64, Organism=Escherichia coli, GI145693107, Length=309, Percent_Identity=40.7766990291262, Blast_Score=223, Evalue=1e-59, Organism=Escherichia coli, GI1789963, Length=296, Percent_Identity=40.8783783783784, Blast_Score=219, Evalue=2e-58, Organism=Escherichia coli, GI48994883, Length=298, Percent_Identity=41.2751677852349, Blast_Score=211, Evalue=4e-56, Organism=Escherichia coli, GI1788506, Length=232, Percent_Identity=44.8275862068966, Blast_Score=182, Evalue=4e-47, Organism=Escherichia coli, GI1787759, Length=290, Percent_Identity=36.2068965517241, Blast_Score=166, Evalue=2e-42, Organism=Escherichia coli, GI1787548, Length=325, Percent_Identity=32.6153846153846, Blast_Score=165, Evalue=3e-42, Organism=Escherichia coli, GI1789891, Length=219, Percent_Identity=40.6392694063927, Blast_Score=163, Evalue=1e-41, Organism=Escherichia coli, GI1787547, Length=265, Percent_Identity=34.7169811320755, Blast_Score=162, Evalue=3e-41, Organism=Escherichia coli, GI48994997, Length=224, Percent_Identity=35.2678571428571, Blast_Score=130, Evalue=1e-31, Organism=Escherichia coli, GI1786398, Length=251, Percent_Identity=32.6693227091633, Blast_Score=124, Evalue=1e-29, Organism=Escherichia coli, GI1787712, Length=231, Percent_Identity=33.7662337662338, Blast_Score=123, Evalue=2e-29, Organism=Escherichia coli, GI87081791, Length=281, Percent_Identity=32.0284697508897, Blast_Score=123, Evalue=2e-29, Organism=Escherichia coli, GI1787370, Length=261, Percent_Identity=29.8850574712644, Blast_Score=122, Evalue=3e-29, Organism=Escherichia coli, GI1788761, Length=256, Percent_Identity=31.640625, Blast_Score=120, Evalue=1e-28, Organism=Escherichia coli, GI87081709, Length=296, Percent_Identity=29.3918918918919, Blast_Score=117, Evalue=1e-27, Organism=Escherichia coli, GI1789032, Length=228, Percent_Identity=33.7719298245614, Blast_Score=114, Evalue=8e-27, Organism=Escherichia coli, GI1789672, Length=230, Percent_Identity=33.4782608695652, Blast_Score=111, Evalue=8e-26, Organism=Escherichia coli, GI1788225, Length=228, Percent_Identity=32.4561403508772, Blast_Score=110, Evalue=1e-25, Organism=Escherichia coli, GI1787029, Length=243, Percent_Identity=32.5102880658436, Blast_Score=108, Evalue=4e-25, Organism=Escherichia coli, GI1790467, Length=239, Percent_Identity=30.9623430962343, Blast_Score=105, Evalue=4e-24, Organism=Escherichia coli, GI1789890, Length=233, Percent_Identity=31.7596566523605, Blast_Score=102, Evalue=4e-23, Organism=Escherichia coli, GI1788644, Length=241, Percent_Identity=32.7800829875519, Blast_Score=102, Evalue=5e-23, Organism=Escherichia coli, GI87082267, Length=259, Percent_Identity=30.8880308880309, Blast_Score=98, Evalue=8e-22, Organism=Escherichia coli, GI1786872, Length=217, Percent_Identity=31.3364055299539, Blast_Score=97, Evalue=2e-21, Organism=Escherichia coli, GI1787089, Length=222, Percent_Identity=33.3333333333333, Blast_Score=96, Evalue=3e-21, Organism=Escherichia coli, GI1788450, Length=247, Percent_Identity=26.7206477732794, Blast_Score=95, Evalue=7e-21, Organism=Escherichia coli, GI1787164, Length=203, Percent_Identity=33.4975369458128, Blast_Score=94, Evalue=1e-20, Organism=Escherichia coli, GI1786563, Length=211, Percent_Identity=31.2796208530806, Blast_Score=92, Evalue=7e-20, Organism=Escherichia coli, GI48995001, Length=217, Percent_Identity=28.5714285714286, Blast_Score=91, Evalue=1e-19, Organism=Escherichia coli, GI1790162, Length=241, Percent_Identity=28.2157676348548, Blast_Score=91, Evalue=2e-19, Organism=Escherichia coli, GI1786253, Length=213, Percent_Identity=28.6384976525822, Blast_Score=89, Evalue=3e-19, Organism=Escherichia coli, GI1786698, Length=198, Percent_Identity=27.7777777777778, Blast_Score=87, Evalue=2e-18, Organism=Escherichia coli, GI87081834, Length=212, Percent_Identity=30.6603773584906, Blast_Score=86, Evalue=5e-18, Organism=Escherichia coli, GI1789873, Length=207, Percent_Identity=31.4009661835749, Blast_Score=82, Evalue=4e-17, Organism=Escherichia coli, GI1786345, Length=215, Percent_Identity=31.1627906976744, Blast_Score=81, Evalue=1e-16, Organism=Escherichia coli, GI1787105, Length=254, Percent_Identity=28.740157480315, Blast_Score=79, Evalue=6e-16, Organism=Escherichia coli, GI1787143, Length=215, Percent_Identity=32.093023255814, Blast_Score=77, Evalue=1e-15, Organism=Escherichia coli, GI1786703, Length=205, Percent_Identity=29.2682926829268, Blast_Score=77, Evalue=1e-15, Organism=Escherichia coli, GI1786981, Length=221, Percent_Identity=30.7692307692308, Blast_Score=77, Evalue=2e-15, Organism=Escherichia coli, GI1790544, Length=248, Percent_Identity=30.241935483871, Blast_Score=71, Evalue=1e-13, Organism=Escherichia coli, GI1788165, Length=195, Percent_Identity=30.2564102564103, Blast_Score=70, Evalue=2e-13, Organism=Escherichia coli, GI48994943, Length=213, Percent_Identity=27.2300469483568, Blast_Score=70, Evalue=2e-13, Organism=Escherichia coli, GI1787792, Length=217, Percent_Identity=27.6497695852535, Blast_Score=69, Evalue=4e-13, Organism=Escherichia coli, GI1790534, Length=198, Percent_Identity=29.7979797979798, Blast_Score=69, Evalue=6e-13, Organism=Escherichia coli, GI1789991, Length=223, Percent_Identity=27.8026905829596, Blast_Score=68, Evalue=7e-13, Organism=Escherichia coli, GI1790525, Length=231, Percent_Identity=26.4069264069264, Blast_Score=68, Evalue=8e-13, Organism=Escherichia coli, GI1788053, Length=189, Percent_Identity=30.1587301587302, Blast_Score=68, Evalue=1e-12, Organism=Escherichia coli, GI1786654, Length=222, Percent_Identity=26.5765765765766, Blast_Score=64, Evalue=1e-11, Organism=Escherichia coli, GI1788897, Length=293, Percent_Identity=24.9146757679181, Blast_Score=64, Evalue=1e-11, Organism=Escherichia coli, GI1786653, Length=227, Percent_Identity=26.431718061674, Blast_Score=64, Evalue=1e-11, Organism=Escherichia coli, GI1790739, Length=218, Percent_Identity=28.4403669724771, Blast_Score=62, Evalue=4e-11, Organism=Escherichia coli, GI1786319, Length=219, Percent_Identity=26.9406392694064, Blast_Score=62, Evalue=8e-11, Organism=Caenorhabditis elegans, GI193208177, Length=245, Percent_Identity=29.7959183673469, Blast_Score=92, Evalue=4e-19, Organism=Caenorhabditis elegans, GI193209708, Length=219, Percent_Identity=30.1369863013699, Blast_Score=90, Evalue=2e-18, Organism=Caenorhabditis elegans, GI193202349, Length=228, Percent_Identity=28.0701754385965, Blast_Score=86, Evalue=2e-17, Organism=Caenorhabditis elegans, GI17541710, Length=278, Percent_Identity=28.0575539568345, Blast_Score=81, Evalue=7e-16, Organism=Caenorhabditis elegans, GI193211015, Length=214, Percent_Identity=26.1682242990654, Blast_Score=75, Evalue=6e-14, Organism=Caenorhabditis elegans, GI71996809, Length=214, Percent_Identity=26.1682242990654, Blast_Score=75, Evalue=6e-14, Organism=Caenorhabditis elegans, GI193211017, Length=214, Percent_Identity=26.1682242990654, Blast_Score=75, Evalue=6e-14, Organism=Caenorhabditis elegans, GI25146777, Length=216, Percent_Identity=26.8518518518519, Blast_Score=74, Evalue=1e-13, Organism=Caenorhabditis elegans, GI115534520, Length=228, Percent_Identity=28.5087719298246, Blast_Score=72, Evalue=5e-13, Organism=Caenorhabditis elegans, GI17569143, Length=243, Percent_Identity=27.1604938271605, Blast_Score=71, Evalue=7e-13, Organism=Caenorhabditis elegans, GI17567265, Length=254, Percent_Identity=27.5590551181102, Blast_Score=71, Evalue=9e-13, Organism=Caenorhabditis elegans, GI17558664, Length=224, Percent_Identity=28.5714285714286, Blast_Score=70, Evalue=1e-12, Organism=Caenorhabditis elegans, GI115533592, Length=230, Percent_Identity=30.4347826086957, Blast_Score=70, Evalue=1e-12, Organism=Caenorhabditis elegans, GI212646699, Length=222, Percent_Identity=24.7747747747748, Blast_Score=70, Evalue=2e-12, Organism=Caenorhabditis elegans, GI17565938, Length=229, Percent_Identity=30.5676855895196, Blast_Score=70, Evalue=2e-12, Organism=Caenorhabditis elegans, GI17569145, Length=206, Percent_Identity=29.6116504854369, Blast_Score=69, Evalue=4e-12, Organism=Caenorhabditis elegans, GI17567269, Length=217, Percent_Identity=29.4930875576037, Blast_Score=66, Evalue=3e-11, Organism=Caenorhabditis elegans, GI17551700, Length=232, Percent_Identity=25, Blast_Score=66, Evalue=3e-11, Organism=Caenorhabditis elegans, GI17551702, Length=232, Percent_Identity=25, Blast_Score=65, Evalue=4e-11, Organism=Caenorhabditis elegans, GI17543740, Length=225, Percent_Identity=27.1111111111111, Blast_Score=65, Evalue=4e-11, Organism=Saccharomyces cerevisiae, GI6324985, Length=233, Percent_Identity=27.0386266094421, Blast_Score=78, Evalue=2e-15, Organism=Saccharomyces cerevisiae, GI6323217, Length=231, Percent_Identity=29.4372294372294, Blast_Score=71, Evalue=2e-13, Organism=Drosophila melanogaster, GI85726357, Length=229, Percent_Identity=30.5676855895196, Blast_Score=87, Evalue=2e-17, Organism=Drosophila melanogaster, GI17136662, Length=299, Percent_Identity=26.0869565217391, Blast_Score=79, Evalue=4e-15, Organism=Drosophila melanogaster, GI24641565, Length=226, Percent_Identity=30.0884955752212, Blast_Score=76, Evalue=3e-14, Organism=Drosophila melanogaster, GI281363262, Length=212, Percent_Identity=30.6603773584906, Blast_Score=74, Evalue=1e-13, Organism=Drosophila melanogaster, GI24653245, Length=212, Percent_Identity=30.6603773584906, Blast_Score=74, Evalue=2e-13, Organism=Drosophila melanogaster, GI24659289, Length=217, Percent_Identity=29.9539170506912, Blast_Score=73, Evalue=3e-13, Organism=Drosophila melanogaster, GI23397593, Length=230, Percent_Identity=26.5217391304348, Blast_Score=65, Evalue=6e-11,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003439 - InterPro: IPR017871 - InterPro: IPR003593 - InterPro: IPR010066 - InterPro: IPR013563 [H]
Pfam domain/function: PF00005 ABC_tran; PF08352 oligo_HPY [H]
EC number: NA
Molecular weight: Translated: 38828; Mature: 38697
Theoretical pI: Translated: 8.59; Mature: 8.59
Prosite motif: PS00211 ABC_TRANSPORTER_1 ; PS50893 ABC_TRANSPORTER_2
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.7 %Cys (Translated Protein) 3.4 %Met (Translated Protein) 5.1 %Cys+Met (Translated Protein) 1.7 %Cys (Mature Protein) 3.1 %Met (Mature Protein) 4.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSANVMDTPGALASGVAAETAMPPAPLLELRGVSKRFVKSLDIAAKVANVFGAKQRVEIV CCCCCCCCCCHHHHCCHHHCCCCCCCHHHHCCHHHHHHHHHHHHHHHHHHHCCHHHHHHH HAVDRVDLSIRAGEVVGLVGESGCGKSTLGRMAVGLHTLTEGERFWRGTDLDRLPPDRKR HHHHHHCEEEECCCEEEEECCCCCCHHHHHHHHHHHHHHHCCHHHHCCCCCCCCCCCHHH EKQLAIQMIFQDPYASLNPRMRVLDIVGEAPVVHGMVEKGAQKAYVEDMLVRVGMDPTVL HHHHHHHHHHCCCCCCCCCCEEEEEHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHH RRFPHQFSGGQRARIGIARALAVKPEFLVCDESVAALDVSIQAQVLNLFMRLREELNLTY HHCCHHHCCCCEEHHHHHHHHCCCCCEEEECCCCEEEEHHHHHHHHHHHHHHHHHCCEEE LFISHDLGVVKHISDRVVIMYLGRVVESAPTEEVFAAPNHPYTQALLAEAPKLEVGKKTY EEEECCCHHHHHHCCCCHHHHHHHHHHCCCCHHHEECCCCCHHHHHHHCCCCCCCCCEEE VAIRGEIPSPLNPPTGCHFHPRCPHAMPRCKTEQPVLKEIAPLRFSACHLNDQT EEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHCCCEEEEECCCCCC >Mature Secondary Structure SANVMDTPGALASGVAAETAMPPAPLLELRGVSKRFVKSLDIAAKVANVFGAKQRVEIV CCCCCCCCCHHHHCCHHHCCCCCCCHHHHCCHHHHHHHHHHHHHHHHHHHCCHHHHHHH HAVDRVDLSIRAGEVVGLVGESGCGKSTLGRMAVGLHTLTEGERFWRGTDLDRLPPDRKR HHHHHHCEEEECCCEEEEECCCCCCHHHHHHHHHHHHHHHCCHHHHCCCCCCCCCCCHHH EKQLAIQMIFQDPYASLNPRMRVLDIVGEAPVVHGMVEKGAQKAYVEDMLVRVGMDPTVL HHHHHHHHHHCCCCCCCCCCEEEEEHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHH RRFPHQFSGGQRARIGIARALAVKPEFLVCDESVAALDVSIQAQVLNLFMRLREELNLTY HHCCHHHCCCCEEHHHHHHHHCCCCCEEEECCCCEEEEHHHHHHHHHHHHHHHHHCCEEE LFISHDLGVVKHISDRVVIMYLGRVVESAPTEEVFAAPNHPYTQALLAEAPKLEVGKKTY EEEECCCHHHHHHCCCCHHHHHHHHHHCCCCHHHEECCCCCHHHHHHHCCCCCCCCCEEE VAIRGEIPSPLNPPTGCHFHPRCPHAMPRCKTEQPVLKEIAPLRFSACHLNDQT EEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHCCCEEEEECCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: ATP; oligopeptides [Periplasm]; H2O [C]
Specific reaction: ATP + oligopeptides [Periplasm] + H2O = ADP + phosphate + oligopeptides [Cytoplasm] [C]
General reaction: NA
Inhibitor: NA
Structure determination priority: 7.0
TargetDB status: NA
Availability: NA
References: 7997159; 9384377 [H]