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The map label for this gene is virD2

Identifier: 94311950

GI number: 94311950

Start: 3277026

End: 3279002

Strand: Reverse

Name: virD2

Synonym: Rmet_3018

Alternate gene names: NA

Gene position: 3279002-3277026 (Counterclockwise)

Preceding gene: 94311951

Following gene: 94311949

Centisome position: 83.48

GC content: 68.69

Gene sequence:

>1977_bases
ATGACCAACCGCCGCGACGATGATTTCCGCATCCGCCCCAGCGCACCGAAGAACCGGGGCCAGGGCTTCGTATCCAAGGT
GCTCCAGCAGGCAGGCAAGGCCAGCGGCGGCAAGTCCACGGTGCGCCGTCCTGGCGGCAGTGGCAAGGGCACCGGCCAGC
GGCCCGGATCGCGCCTGGGACGCGGCCACACGGCGGCGCGCTTCGCAGGGGCGAAGCTCACGCCTATGTCGCGGCGCGTG
ACCATCAAGACACTACTGGTCAACCAGCAGCGGGCCAGTCCGCAGTCGCTCGCCAAGCACCTGCGCTACATCGAGCGCGA
CGGCGTGGGCCGCGACGGCGAACCGGGTCGGGCCTATGGGCCGCAGACCGACGAAGCTGATCTGAACGCATTCAAGGAGC
GCTGCGCCGATGATCGGCACCACTTTCGCTTCATCGTTTCGCCCGAGGAAGGGGCCGAGCTGGAAGACCTGCGCACCTAC
ACGCGGCACCTGATGGGACGCATGGAGGCCGACCTGGGCACGCGGCTGGAATGGGTGGCGGTCGATCACTGGAATACCGA
CAACCCGCACACCCACCTGATCGTGCGCGGGCGCGACGACACCGGCAAAGACCTCATCATCGCGGGCGACTACATCACTG
ATGGTTTTCGTCATCGCGCCGCCGAGCTGGCGACCGAATGGCTGGGGCCACGCACCGAGCTGGAGATCCAGCAGACCTTG
CAGCGCGAGGTGGAGCAAGAGCGGTGGACTAGCCTGGATCGCACGTTGAAACGCGAGGCCGGCGAGGATGGCCGGGTACA
GATCGAACGCTTCAACGAACCGACGTTGCAACGCCAGCGCCTGCTGCTGATCAGCCGCCTGCAACGCTTGCAGCACCTGG
GCCTGGTCGACGAGACGCAGCCCGGCAGTTGGGCCGTCCATGCCGATGCCGAGAAGACCTTGCGCGCCCTGGGCGAGCGT
GGAGACATCATCCGCACCATCCAGCGGGCCATGAGCGGCCAGCCGCGCGAGCTGGCGGTGTTCGAGCCGGGCGACGATGG
CCGAACTATTCTCGGCCGCGTAGCCGCGAAGGGGCTGGCCGACGAACTGCGCGACCGGGGCTATCTGGTCATCGACGGCG
TGGACGGCAAGGCCCACTACGTCGCGCTCAATGCCCGCGACGAGCTGGCGAACTATCCCAGCGGCGCCGTGGTGGAGGTG
AAAGGATCGGCCGACGTGCGCGCGGCGGACAAGAACATCGCCGCGCTGGCGAGCGATGGCTTGTACCGTACCGACCATCA
CCTCGCCATCGCCCAGGGGCAGGCCGTGCCCGGCCGCGATCCGCAGGAAGTCGTCGCGGCCCATGTCCGCCGACTGGAAG
CCTTGCGCCGCGCCGGCATCGTGGAGCGTGTGGCCGAAGGTCTATGGAAGGTGCCGGACGATCTGCCCGAGCGTGGCCGT
CAGTACGACGCGCAGCGCCTGGGAAGCGTGGCCGTGGAACTGAAATCGCACCTGCCCATCGAGCGGCAGGCCCGCGTGAT
CGGGGCCACCTGGCTCGACCAGCAACTGATCGGCGGCGGCTCGGGCCTGGGCGACCTGGGCTTTGGCGGCGAGGCCAAAC
AGGCCATGCAGCAGCGCACCGACTTCCTGGCCGAACAGGGGTTGGCCGAGCGGCGCGGGCAGCGCGTGATCCTGGCGCGC
AACCTGCTGGGCACGCTGCGCAACCGGGAGCTGGCGCAGGCCGCGAAGGACATTGCAGGCGAAACGGGCCTGGAGCATCG
GCCCGTGGCCGACGGGCAGCGCGTGGCCGGCATCTACCGGCGCAGCGTCATGCTCGCCAGCGGGCGCTACGCGATGCTTG
ATGACGGCATGGGCTTCTCGCTGGTGCCGTGGAAGCCGGTGATCGAACAGCGATTGGGGCAGCAGCTTTCCGCGACGGTT
CGCGGCGGCGGGGCGTCCTGGGAGATTGGGCGGCATCGGGGGCCAACCATTTCTTGA

Upstream 100 bases:

>100_bases
TTTGCCGCCGTGCCGCTTGGGGCGTGAGGCACGCACCGATACAGGCATGTCCGCGTGCTTCGCACGCCCGGACACGCCAG
AGTTTGCAGGGAGCGCAGGC

Downstream 100 bases:

>100_bases
GTCAAGGTAAAGCCACAAGCCGGTGGGCAAAATTAGATTTTATCCATAGATGGGTGATCAATCCAAAGCGTTACCAAAGG
TTGGGATGCCAAAATTAGAA

Product: relaxase type IV secretory pathway VirD2

Products: NA

Alternate protein names: None

Number of amino acids: Translated: 658; Mature: 657

Protein sequence:

>658_residues
MTNRRDDDFRIRPSAPKNRGQGFVSKVLQQAGKASGGKSTVRRPGGSGKGTGQRPGSRLGRGHTAARFAGAKLTPMSRRV
TIKTLLVNQQRASPQSLAKHLRYIERDGVGRDGEPGRAYGPQTDEADLNAFKERCADDRHHFRFIVSPEEGAELEDLRTY
TRHLMGRMEADLGTRLEWVAVDHWNTDNPHTHLIVRGRDDTGKDLIIAGDYITDGFRHRAAELATEWLGPRTELEIQQTL
QREVEQERWTSLDRTLKREAGEDGRVQIERFNEPTLQRQRLLLISRLQRLQHLGLVDETQPGSWAVHADAEKTLRALGER
GDIIRTIQRAMSGQPRELAVFEPGDDGRTILGRVAAKGLADELRDRGYLVIDGVDGKAHYVALNARDELANYPSGAVVEV
KGSADVRAADKNIAALASDGLYRTDHHLAIAQGQAVPGRDPQEVVAAHVRRLEALRRAGIVERVAEGLWKVPDDLPERGR
QYDAQRLGSVAVELKSHLPIERQARVIGATWLDQQLIGGGSGLGDLGFGGEAKQAMQQRTDFLAEQGLAERRGQRVILAR
NLLGTLRNRELAQAAKDIAGETGLEHRPVADGQRVAGIYRRSVMLASGRYAMLDDGMGFSLVPWKPVIEQRLGQQLSATV
RGGGASWEIGRHRGPTIS

Sequences:

>Translated_658_residues
MTNRRDDDFRIRPSAPKNRGQGFVSKVLQQAGKASGGKSTVRRPGGSGKGTGQRPGSRLGRGHTAARFAGAKLTPMSRRV
TIKTLLVNQQRASPQSLAKHLRYIERDGVGRDGEPGRAYGPQTDEADLNAFKERCADDRHHFRFIVSPEEGAELEDLRTY
TRHLMGRMEADLGTRLEWVAVDHWNTDNPHTHLIVRGRDDTGKDLIIAGDYITDGFRHRAAELATEWLGPRTELEIQQTL
QREVEQERWTSLDRTLKREAGEDGRVQIERFNEPTLQRQRLLLISRLQRLQHLGLVDETQPGSWAVHADAEKTLRALGER
GDIIRTIQRAMSGQPRELAVFEPGDDGRTILGRVAAKGLADELRDRGYLVIDGVDGKAHYVALNARDELANYPSGAVVEV
KGSADVRAADKNIAALASDGLYRTDHHLAIAQGQAVPGRDPQEVVAAHVRRLEALRRAGIVERVAEGLWKVPDDLPERGR
QYDAQRLGSVAVELKSHLPIERQARVIGATWLDQQLIGGGSGLGDLGFGGEAKQAMQQRTDFLAEQGLAERRGQRVILAR
NLLGTLRNRELAQAAKDIAGETGLEHRPVADGQRVAGIYRRSVMLASGRYAMLDDGMGFSLVPWKPVIEQRLGQQLSATV
RGGGASWEIGRHRGPTIS
>Mature_657_residues
TNRRDDDFRIRPSAPKNRGQGFVSKVLQQAGKASGGKSTVRRPGGSGKGTGQRPGSRLGRGHTAARFAGAKLTPMSRRVT
IKTLLVNQQRASPQSLAKHLRYIERDGVGRDGEPGRAYGPQTDEADLNAFKERCADDRHHFRFIVSPEEGAELEDLRTYT
RHLMGRMEADLGTRLEWVAVDHWNTDNPHTHLIVRGRDDTGKDLIIAGDYITDGFRHRAAELATEWLGPRTELEIQQTLQ
REVEQERWTSLDRTLKREAGEDGRVQIERFNEPTLQRQRLLLISRLQRLQHLGLVDETQPGSWAVHADAEKTLRALGERG
DIIRTIQRAMSGQPRELAVFEPGDDGRTILGRVAAKGLADELRDRGYLVIDGVDGKAHYVALNARDELANYPSGAVVEVK
GSADVRAADKNIAALASDGLYRTDHHLAIAQGQAVPGRDPQEVVAAHVRRLEALRRAGIVERVAEGLWKVPDDLPERGRQ
YDAQRLGSVAVELKSHLPIERQARVIGATWLDQQLIGGGSGLGDLGFGGEAKQAMQQRTDFLAEQGLAERRGQRVILARN
LLGTLRNRELAQAAKDIAGETGLEHRPVADGQRVAGIYRRSVMLASGRYAMLDDGMGFSLVPWKPVIEQRLGQQLSATVR
GGGASWEIGRHRGPTIS

Specific function: Unknown

COG id: COG3843

COG function: function code U; Type IV secretory pathway, VirD2 components (relaxase)

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 72666; Mature: 72535

Theoretical pI: Translated: 10.08; Mature: 10.08

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
1.5 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
1.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTNRRDDDFRIRPSAPKNRGQGFVSKVLQQAGKASGGKSTVRRPGGSGKGTGQRPGSRLG
CCCCCCCCEEECCCCCCCCCCHHHHHHHHHHCCCCCCCHHHCCCCCCCCCCCCCCHHHHC
RGHTAARFAGAKLTPMSRRVTIKTLLVNQQRASPQSLAKHLRYIERDGVGRDGEPGRAYG
CCCHHHHHCCCCCCCCCCCEEEEHEECCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCC
PQTDEADLNAFKERCADDRHHFRFIVSPEEGAELEDLRTYTRHLMGRMEADLGTRLEWVA
CCCCCHHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHCCCEEEEE
VDHWNTDNPHTHLIVRGRDDTGKDLIIAGDYITDGFRHRAAELATEWLGPRTELEIQQTL
EECCCCCCCCEEEEEECCCCCCCEEEEECCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHH
QREVEQERWTSLDRTLKREAGEDGRVQIERFNEPTLQRQRLLLISRLQRLQHLGLVDETQ
HHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCHHHHHHHHHHHHHHHHHHCCCCCCCC
PGSWAVHADAEKTLRALGERGDIIRTIQRAMSGQPRELAVFEPGDDGRTILGRVAAKGLA
CCCEEEECCHHHHHHHHHCCCHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHHHH
DELRDRGYLVIDGVDGKAHYVALNARDELANYPSGAVVEVKGSADVRAADKNIAALASDG
HHHHCCCEEEEECCCCCEEEEEEECHHHHHCCCCCCEEEEECCCCCEECCCCHHHHHCCC
LYRTDHHLAIAQGQAVPGRDPQEVVAAHVRRLEALRRAGIVERVAEGLWKVPDDLPERGR
CEECCCEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHH
QYDAQRLGSVAVELKSHLPIERQARVIGATWLDQQLIGGGSGLGDLGFGGEAKQAMQQRT
HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHH
DFLAEQGLAERRGQRVILARNLLGTLRNRELAQAAKDIAGETGLEHRPVADGQRVAGIYR
HHHHHHCHHHHCCCEEEEHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHH
RSVMLASGRYAMLDDGMGFSLVPWKPVIEQRLGQQLSATVRGGGASWEIGRHRGPTIS
HHHEEECCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCEECCCCCCCCCC
>Mature Secondary Structure 
TNRRDDDFRIRPSAPKNRGQGFVSKVLQQAGKASGGKSTVRRPGGSGKGTGQRPGSRLG
CCCCCCCEEECCCCCCCCCCHHHHHHHHHHCCCCCCCHHHCCCCCCCCCCCCCCHHHHC
RGHTAARFAGAKLTPMSRRVTIKTLLVNQQRASPQSLAKHLRYIERDGVGRDGEPGRAYG
CCCHHHHHCCCCCCCCCCCEEEEHEECCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCC
PQTDEADLNAFKERCADDRHHFRFIVSPEEGAELEDLRTYTRHLMGRMEADLGTRLEWVA
CCCCCHHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHCCCEEEEE
VDHWNTDNPHTHLIVRGRDDTGKDLIIAGDYITDGFRHRAAELATEWLGPRTELEIQQTL
EECCCCCCCCEEEEEECCCCCCCEEEEECCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHH
QREVEQERWTSLDRTLKREAGEDGRVQIERFNEPTLQRQRLLLISRLQRLQHLGLVDETQ
HHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCHHHHHHHHHHHHHHHHHHCCCCCCCC
PGSWAVHADAEKTLRALGERGDIIRTIQRAMSGQPRELAVFEPGDDGRTILGRVAAKGLA
CCCEEEECCHHHHHHHHHCCCHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHHHH
DELRDRGYLVIDGVDGKAHYVALNARDELANYPSGAVVEVKGSADVRAADKNIAALASDG
HHHHCCCEEEEECCCCCEEEEEEECHHHHHCCCCCCEEEEECCCCCEECCCCHHHHHCCC
LYRTDHHLAIAQGQAVPGRDPQEVVAAHVRRLEALRRAGIVERVAEGLWKVPDDLPERGR
CEECCCEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHH
QYDAQRLGSVAVELKSHLPIERQARVIGATWLDQQLIGGGSGLGDLGFGGEAKQAMQQRT
HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHH
DFLAEQGLAERRGQRVILARNLLGTLRNRELAQAAKDIAGETGLEHRPVADGQRVAGIYR
HHHHHHCHHHHCCCEEEEHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHH
RSVMLASGRYAMLDDGMGFSLVPWKPVIEQRLGQQLSATVRGGGASWEIGRHRGPTIS
HHHEEECCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCEECCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA