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The map label for this gene is ykfC [H]

Identifier: 94311815

GI number: 94311815

Start: 3135681

End: 3137381

Strand: Direct

Name: ykfC [H]

Synonym: Rmet_2883

Alternate gene names: 94311815

Gene position: 3135681-3137381 (Clockwise)

Preceding gene: 94311812

Following gene: 94311816

Centisome position: 79.83

GC content: 56.32

Gene sequence:

>1701_bases
ATGGAAGCATTGATCCGTGAGGATGAATCTGCGCCCTCCGGCATCCCGCAGCGATGGGGCGACATCAATTGGCGCCGCGT
CGAACGGAATGTTCGGGCAATGCAGATTCGAATTGCGAAGGCAACACAGGAAGGGGATTGGCGCAGGGTGAAAACCTTGC
AACGGTCCCTGACCCGCTCGTTTTCTGCCAAGGCATCGGCGGTAAGGCGAGTGGCGATGAACCAAGGAGCGCGGACGGCT
GGTGTCGACCGCGTTGCGTGGGACTCGCCTGAAGCTCGATGGGAATCCATTGGGAGGTTGAAGCGCCGGGGGTATCGTCC
GCTGCCGTTAAGGCGGGTGTACATCCCCAAGGCGAATGGGAAGGAACGCCCCTTGGGCATTCCAACTCTGCACGACCGAG
CCATGCAGGCGCTATACCTGCTGGCGCTGGAGCCGGTGTCCGAGGGGACGAGCGATCCGAACTCTTACGGGTTTCGGATT
AATCGTTCGACTGCGGATGCCATGTCCCAGCTGTTTGTCTCCTTGTCCAAAAAGGCTTCGGCCCAATGGGTGCTGGAGGC
AGACATTAAAGGATGCTTCGACCATATCAGCCACGACTGGCTGGAGCGCAATGTCCCCATGGACAAAGCGATCCTTCGGA
AGTGGTTGAAGGCTGGCGTGGTATTTCAAAGCCAGTTTCAGGCGACCGATGCTGGAACACCACAGGGGGGCATCATTTCC
CCAACCTTGGCCAACGTGGCACTGAATGGACTGGAACGTGACCTGATGAAGTTCTTACGAACGAAACTCGGGACTGTCCA
GGCCAACAGGCTAAAGGTGAATGTCGTGCGGTACGCGGACGACTTCGTGATCACCGGCAATACGCCGGAAGTTTTGGAGC
ACGAAGTGAAGCCGTGGGTAGAACAGTTCCTAGCAGTACGGGGACTCACTCTTTCCCCGGAGAAAACGCGAATCGTGAAC
ATCGCCGATGGCTTTGACTTCCTTGGGTGGAATTTCCGGAAGTATTCGGGAACGCTGCTCATCAAGCCGAGCAAGAAGAA
CGCACTAGCGTTCTATCGCAGGGTCAAGGAGGTTATCAGGACACACCATGGGAAAAAGCCGGAGGATCTGATCCGAACGC
TGAACCCGATGCTGAGGGGTTGGGCACAGTATCACGGCCCAGTGGTTGCAAAGGCGGCGTTCACCCGAATGGAGCACCTG
ATCTTCAGGTGTCTATGGAGGTGGGCAAAACGGCGACACCGAGGGAAGAATACCGAGTGGGTGCGGAAGAAGTACTTTGC
CTCAATCGGAATGCGGAACTGGGTGTTTGGAACCAACGTTTTGGGTAAGGCTGGCGAACGCTACTGGATGGAGTTGTATT
CGATACCGAGTACGCCTATTCGGAGGCACAAGAAGGTTCGAGGGGACTACAACCCCTTCGACCCAGCGCAGGAAATGTAT
GGCGAAACGCTGCGGCAGGAACGCATGGCAGAAAGCATGTCGTACCGAAAGCAGTGGGCAAAGCTGTTCATGTCCCAGCG
GGGCTTATGCGCGGTATGCCAAGGCAAGATAACCAAAGAGACAAGATGGCATGACCATCACATCGAACCACGGGTTTCCG
GTGGCTCGGACGCTCTAGGGAATCGAGTTCTGGTGCACCCCGACTGTCATGTCCAAGTTCACTCCTATGGTCAAGTTGCA
GTGAAGCCGGTGTTTGATTAA

Upstream 100 bases:

>100_bases
GAACTCGCTTGTTTAATTTTCTTCCCTTGGGGGGTGATATGCCCCTCAAGGGGCATGTTGTCTCCGTTGTCTTGGGAAGT
CCTCAAGATTGGAGAGCAGC

Downstream 100 bases:

>100_bases
CTCATTCATTTTGTAGAGGCTTGAGCCGTATGCGGGGAAACTCGCACGTACGGTTCTTAGGGGGGAGCATTGCCAGTGAT
GGTATGCTCCTACCCTCCCC

Product: RNA-directed DNA polymerase (reverse transcriptase Retron-type)

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 566; Mature: 566

Protein sequence:

>566_residues
MEALIREDESAPSGIPQRWGDINWRRVERNVRAMQIRIAKATQEGDWRRVKTLQRSLTRSFSAKASAVRRVAMNQGARTA
GVDRVAWDSPEARWESIGRLKRRGYRPLPLRRVYIPKANGKERPLGIPTLHDRAMQALYLLALEPVSEGTSDPNSYGFRI
NRSTADAMSQLFVSLSKKASAQWVLEADIKGCFDHISHDWLERNVPMDKAILRKWLKAGVVFQSQFQATDAGTPQGGIIS
PTLANVALNGLERDLMKFLRTKLGTVQANRLKVNVVRYADDFVITGNTPEVLEHEVKPWVEQFLAVRGLTLSPEKTRIVN
IADGFDFLGWNFRKYSGTLLIKPSKKNALAFYRRVKEVIRTHHGKKPEDLIRTLNPMLRGWAQYHGPVVAKAAFTRMEHL
IFRCLWRWAKRRHRGKNTEWVRKKYFASIGMRNWVFGTNVLGKAGERYWMELYSIPSTPIRRHKKVRGDYNPFDPAQEMY
GETLRQERMAESMSYRKQWAKLFMSQRGLCAVCQGKITKETRWHDHHIEPRVSGGSDALGNRVLVHPDCHVQVHSYGQVA
VKPVFD

Sequences:

>Translated_566_residues
MEALIREDESAPSGIPQRWGDINWRRVERNVRAMQIRIAKATQEGDWRRVKTLQRSLTRSFSAKASAVRRVAMNQGARTA
GVDRVAWDSPEARWESIGRLKRRGYRPLPLRRVYIPKANGKERPLGIPTLHDRAMQALYLLALEPVSEGTSDPNSYGFRI
NRSTADAMSQLFVSLSKKASAQWVLEADIKGCFDHISHDWLERNVPMDKAILRKWLKAGVVFQSQFQATDAGTPQGGIIS
PTLANVALNGLERDLMKFLRTKLGTVQANRLKVNVVRYADDFVITGNTPEVLEHEVKPWVEQFLAVRGLTLSPEKTRIVN
IADGFDFLGWNFRKYSGTLLIKPSKKNALAFYRRVKEVIRTHHGKKPEDLIRTLNPMLRGWAQYHGPVVAKAAFTRMEHL
IFRCLWRWAKRRHRGKNTEWVRKKYFASIGMRNWVFGTNVLGKAGERYWMELYSIPSTPIRRHKKVRGDYNPFDPAQEMY
GETLRQERMAESMSYRKQWAKLFMSQRGLCAVCQGKITKETRWHDHHIEPRVSGGSDALGNRVLVHPDCHVQVHSYGQVA
VKPVFD
>Mature_566_residues
MEALIREDESAPSGIPQRWGDINWRRVERNVRAMQIRIAKATQEGDWRRVKTLQRSLTRSFSAKASAVRRVAMNQGARTA
GVDRVAWDSPEARWESIGRLKRRGYRPLPLRRVYIPKANGKERPLGIPTLHDRAMQALYLLALEPVSEGTSDPNSYGFRI
NRSTADAMSQLFVSLSKKASAQWVLEADIKGCFDHISHDWLERNVPMDKAILRKWLKAGVVFQSQFQATDAGTPQGGIIS
PTLANVALNGLERDLMKFLRTKLGTVQANRLKVNVVRYADDFVITGNTPEVLEHEVKPWVEQFLAVRGLTLSPEKTRIVN
IADGFDFLGWNFRKYSGTLLIKPSKKNALAFYRRVKEVIRTHHGKKPEDLIRTLNPMLRGWAQYHGPVVAKAAFTRMEHL
IFRCLWRWAKRRHRGKNTEWVRKKYFASIGMRNWVFGTNVLGKAGERYWMELYSIPSTPIRRHKKVRGDYNPFDPAQEMY
GETLRQERMAESMSYRKQWAKLFMSQRGLCAVCQGKITKETRWHDHHIEPRVSGGSDALGNRVLVHPDCHVQVHSYGQVA
VKPVFD

Specific function: Unknown

COG id: COG3344

COG function: function code L; Retron-type reverse transcriptase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 reverse transcriptase domain [H]

Homologues:

Organism=Saccharomyces cerevisiae, GI6226521, Length=327, Percent_Identity=23.5474006116208, Blast_Score=86, Evalue=2e-17,
Organism=Saccharomyces cerevisiae, GI6226520, Length=330, Percent_Identity=24.8484848484848, Blast_Score=84, Evalue=7e-17,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR015706
- InterPro:   IPR000477 [H]

Pfam domain/function: PF00078 RVT_1 [H]

EC number: NA

Molecular weight: Translated: 65077; Mature: 65077

Theoretical pI: Translated: 10.90; Mature: 10.90

Prosite motif: PS50878 RT_POL

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEALIREDESAPSGIPQRWGDINWRRVERNVRAMQIRIAKATQEGDWRRVKTLQRSLTRS
CCCCCCCCCCCCCCCCHHHCCCCHHHHHHHHHHHEEEEECCCCCCCHHHHHHHHHHHHHH
FSAKASAVRRVAMNQGARTAGVDRVAWDSPEARWESIGRLKRRGYRPLPLRRVYIPKANG
HHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCEEEEEECCCC
KERPLGIPTLHDRAMQALYLLALEPVSEGTSDPNSYGFRINRSTADAMSQLFVSLSKKAS
CCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEECHHHHHHHHHHHHHHHCCC
AQWVLEADIKGCFDHISHDWLERNVPMDKAILRKWLKAGVVFQSQFQATDAGTPQGGIIS
CCEEEEHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCHHHHHHCCCCCCCCCCCCCC
PTLANVALNGLERDLMKFLRTKLGTVQANRLKVNVVRYADDFVITGNTPEVLEHEVKPWV
HHHHHHHHHHHHHHHHHHHHHHHCCCEECEEEEEEEEEECCEEEECCCHHHHHHHHHHHH
EQFLAVRGLTLSPEKTRIVNIADGFDFLGWNFRKYSGTLLIKPSKKNALAFYRRVKEVIR
HHHHHHCCCCCCCCCCEEEEEECCCHHHCCCEEEECCEEEEECCCCHHHHHHHHHHHHHH
THHGKKPEDLIRTLNPMLRGWAQYHGPVVAKAAFTRMEHLIFRCLWRWAKRRHRGKNTEW
HHCCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHH
VRKKYFASIGMRNWVFGTNVLGKAGERYWMELYSIPSTPIRRHKKVRGDYNPFDPAQEMY
HHHHHHHHCCCCCCCCCCCHHHHCHHHHHHHHHCCCCCHHHHHHHHCCCCCCCCHHHHHH
GETLRQERMAESMSYRKQWAKLFMSQRGLCAVCQGKITKETRWHDHHIEPRVSGGSDALG
HHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCHHHC
NRVLVHPDCHVQVHSYGQVAVKPVFD
CEEEECCCCEEEEECCCCEEEEECCC
>Mature Secondary Structure
MEALIREDESAPSGIPQRWGDINWRRVERNVRAMQIRIAKATQEGDWRRVKTLQRSLTRS
CCCCCCCCCCCCCCCCHHHCCCCHHHHHHHHHHHEEEEECCCCCCCHHHHHHHHHHHHHH
FSAKASAVRRVAMNQGARTAGVDRVAWDSPEARWESIGRLKRRGYRPLPLRRVYIPKANG
HHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCEEEEEECCCC
KERPLGIPTLHDRAMQALYLLALEPVSEGTSDPNSYGFRINRSTADAMSQLFVSLSKKAS
CCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEECHHHHHHHHHHHHHHHCCC
AQWVLEADIKGCFDHISHDWLERNVPMDKAILRKWLKAGVVFQSQFQATDAGTPQGGIIS
CCEEEEHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCHHHHHHCCCCCCCCCCCCCC
PTLANVALNGLERDLMKFLRTKLGTVQANRLKVNVVRYADDFVITGNTPEVLEHEVKPWV
HHHHHHHHHHHHHHHHHHHHHHHCCCEECEEEEEEEEEECCEEEECCCHHHHHHHHHHHH
EQFLAVRGLTLSPEKTRIVNIADGFDFLGWNFRKYSGTLLIKPSKKNALAFYRRVKEVIR
HHHHHHCCCCCCCCCCEEEEEECCCHHHCCCEEEECCEEEEECCCCHHHHHHHHHHHHHH
THHGKKPEDLIRTLNPMLRGWAQYHGPVVAKAAFTRMEHLIFRCLWRWAKRRHRGKNTEW
HHCCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHH
VRKKYFASIGMRNWVFGTNVLGKAGERYWMELYSIPSTPIRRHKKVRGDYNPFDPAQEMY
HHHHHHHHCCCCCCCCCCCHHHHCHHHHHHHHHCCCCCHHHHHHHHCCCCCCCCHHHHHH
GETLRQERMAESMSYRKQWAKLFMSQRGLCAVCQGKITKETRWHDHHIEPRVSGGSDALG
HHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCHHHC
NRVLVHPDCHVQVHSYGQVAVKPVFD
CEEEECCCCEEEEECCCCEEEEECCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]