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The map label for this gene is vsrC [H]

Identifier: 94311812

GI number: 94311812

Start: 3131733

End: 3132392

Strand: Direct

Name: vsrC [H]

Synonym: Rmet_2880

Alternate gene names: 94311812

Gene position: 3131733-3132392 (Clockwise)

Preceding gene: 335055635

Following gene: 94311815

Centisome position: 79.73

GC content: 64.7

Gene sequence:

>660_bases
ATGTTGAACGCTGCACCGACTTTGTTGGTGGTCGATGATCATCCTATGGCGCTCTCGGGCACAACCGCCTTCCTGGCGGA
AGTGATGCCCGACGTCGCCGTTCATTCCGCTGGCAGCGCCAAGGAAGCCCTTCACTCCCTGAACCAGGGGCTCCGTCCCG
ATATCGTGCTGCTCGACATCTGGCTGAACGATGGTACTGGCTTCGATGCCATGCAGTCGTTCAAGACCGTGATCCCGGGC
GCCCGCTTCATCTTCATGTCGGCGGAGGCCACACCCGAGATCGTGGGACGCGCCCGCGCGCTATCGGCCTGCGGTTTCGT
CGGCAAGCATCTGGACGCCAACGCGTTCACTGCGGCCGTGCGCAAGGTCCTGGCCGGCGACACCAGTTTTCCATCCGATG
AGGCCTTGTCCGGCCGATCGCAATCGTTCGGCCCCGCCCACGGCATTCCCGTCACGCCGGCCGAACTCGGCCTCACGCCG
CGTCAGGGCTCGGTGCTCGCGCTGGTGCTCGAAGGACTGCCGAACAAGGTCATCGCCCGCAAGCTGGGGCTGACCGAGAA
CACCGTCAAGGAACACGTCTCCGCCATCCTGCAACGGCTGGGCGTGCGCACGCGCATGCAGGTCATGTCGCGCATGGAGC
GTTTTCGCCTGCGCCAGTGA

Upstream 100 bases:

>100_bases
AACTTCAATGTTCGGCATCGCGGCGCAGCGCTCCATTTGCGGCATCAGCCAGTGCCGGTGCTTCGTATCTGAACAGTATT
TAACTTAGACGGGAATACGC

Downstream 100 bases:

>100_bases
GGCAGTGAACATCGCCACGCATGAATGACAACGCCGCCTCAAGGGCGGCGTTGTCATTCATGCGTTCATGCCGTGGGCAA
CCAGCGGCGCAGCAACATGC

Product: Response regulator VsrC transcription regulator protein NarL family

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 219; Mature: 219

Protein sequence:

>219_residues
MLNAAPTLLVVDDHPMALSGTTAFLAEVMPDVAVHSAGSAKEALHSLNQGLRPDIVLLDIWLNDGTGFDAMQSFKTVIPG
ARFIFMSAEATPEIVGRARALSACGFVGKHLDANAFTAAVRKVLAGDTSFPSDEALSGRSQSFGPAHGIPVTPAELGLTP
RQGSVLALVLEGLPNKVIARKLGLTENTVKEHVSAILQRLGVRTRMQVMSRMERFRLRQ

Sequences:

>Translated_219_residues
MLNAAPTLLVVDDHPMALSGTTAFLAEVMPDVAVHSAGSAKEALHSLNQGLRPDIVLLDIWLNDGTGFDAMQSFKTVIPG
ARFIFMSAEATPEIVGRARALSACGFVGKHLDANAFTAAVRKVLAGDTSFPSDEALSGRSQSFGPAHGIPVTPAELGLTP
RQGSVLALVLEGLPNKVIARKLGLTENTVKEHVSAILQRLGVRTRMQVMSRMERFRLRQ
>Mature_219_residues
MLNAAPTLLVVDDHPMALSGTTAFLAEVMPDVAVHSAGSAKEALHSLNQGLRPDIVLLDIWLNDGTGFDAMQSFKTVIPG
ARFIFMSAEATPEIVGRARALSACGFVGKHLDANAFTAAVRKVLAGDTSFPSDEALSGRSQSFGPAHGIPVTPAELGLTP
RQGSVLALVLEGLPNKVIARKLGLTENTVKEHVSAILQRLGVRTRMQVMSRMERFRLRQ

Specific function: Unknown

COG id: COG2197

COG function: function code TK; Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain

Gene ontology:

Cell location: Cytoplasm (Probable) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 response regulatory domain [H]

Homologues:

Organism=Escherichia coli, GI1786747, Length=167, Percent_Identity=31.7365269461078, Blast_Score=76, Evalue=2e-15,
Organism=Escherichia coli, GI1788521, Length=201, Percent_Identity=28.8557213930348, Blast_Score=69, Evalue=3e-13,
Organism=Escherichia coli, GI1787473, Length=194, Percent_Identity=31.4432989690722, Blast_Score=68, Evalue=6e-13,
Organism=Escherichia coli, GI1790102, Length=207, Percent_Identity=28.5024154589372, Blast_Score=65, Evalue=5e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011006
- InterPro:   IPR001789
- InterPro:   IPR000792
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00196 GerE; PF00072 Response_reg [H]

EC number: NA

Molecular weight: Translated: 23378; Mature: 23378

Theoretical pI: Translated: 9.38; Mature: 9.38

Prosite motif: PS50110 RESPONSE_REGULATORY ; PS00622 HTH_LUXR_1 ; PS50043 HTH_LUXR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
3.7 %Met     (Translated Protein)
4.1 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
3.7 %Met     (Mature Protein)
4.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLNAAPTLLVVDDHPMALSGTTAFLAEVMPDVAVHSAGSAKEALHSLNQGLRPDIVLLDI
CCCCCCEEEEECCCCCEECCHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCCCEEEEEE
WLNDGTGFDAMQSFKTVIPGARFIFMSAEATPEIVGRARALSACGFVGKHLDANAFTAAV
EECCCCCHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHH
RKVLAGDTSFPSDEALSGRSQSFGPAHGIPVTPAELGLTPRQGSVLALVLEGLPNKVIAR
HHHHHCCCCCCCCHHHCCCCCCCCCCCCCCCCHHHHCCCCCCCCEEEHHHHCCCHHHHHH
KLGLTENTVKEHVSAILQRLGVRTRMQVMSRMERFRLRQ
HHCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MLNAAPTLLVVDDHPMALSGTTAFLAEVMPDVAVHSAGSAKEALHSLNQGLRPDIVLLDI
CCCCCCEEEEECCCCCEECCHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCCCEEEEEE
WLNDGTGFDAMQSFKTVIPGARFIFMSAEATPEIVGRARALSACGFVGKHLDANAFTAAV
EECCCCCHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHH
RKVLAGDTSFPSDEALSGRSQSFGPAHGIPVTPAELGLTPRQGSVLALVLEGLPNKVIAR
HHHHHCCCCCCCCHHHCCCCCCCCCCCCCCCCHHHHCCCCCCCCEEEHHHHCCCHHHHHH
KLGLTENTVKEHVSAILQRLGVRTRMQVMSRMERFRLRQ
HHCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 1360005; 11677609 [H]