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The map label for this gene is ompA [H]

Identifier: 94311700

GI number: 94311700

Start: 3009933

End: 3010817

Strand: Direct

Name: ompA [H]

Synonym: Rmet_2768

Alternate gene names: 94311700

Gene position: 3009933-3010817 (Clockwise)

Preceding gene: 335055629

Following gene: 94311701

Centisome position: 76.63

GC content: 62.26

Gene sequence:

>885_bases
TTGCCGAGTGCGGAATTACAGACAATTACATCTCTCACAGTCTCGGGCTTGTGCACGCGCCGCCATATGCCTATTGTAGT
GCGCCAATCTTGGGATCCCGCGTGCCGACAGGCGGTATGCGGGATCGTCCTGAGTGTTTTTGATTGCATCATGAAAGTTG
TACTGCCAGTGGGCGGCATTACGCGCCAGGCGTTAACATGCAGGATGGCTTTGGCAAAACATTTACGGGAATCACCAGAA
GGAGAAAGCATGAATTTCAAGCTCGTCACCGTCTCGCTCGTCGCGGCTGCGGCCCTGGCGGGTTGCGCCACCGAACAACA
GACCAATACGGCGGTCGGCACCGGAGTCGGTGCGGCGGTAGGCGCGGGGATCGGTAACCTGATCGGCGGCAACACCACTG
GCACGCTGGTCGGCGCGGCAGTGGGCGGCGCGCTCGGCGGCGCCACCGGTTACAACTGGAATGCTATCCGCGGCAAGCTG
AACAAGGACACCGCGGGCACCGGCACCCAGATCACCGAGCAGCCGGACGGCTCCCTGAAGGTCAACATCCCGAGCCAGGT
CACGTTCGACACGGACAGCTCGACGATCAAGCCGTCGTTCCGCAACGTGCTCGACCAGGTGGCCCAGACGCTAGCGCAGC
ATCAGGACGTGTCGGCCAACGTCGTTGGCCATACGGACAGCACCGGCAACCCGCAATACAACATGCAGCTCTCGCAACGC
CGCGCCCAGAGCGTGGCTGGCTACCTGGGTGACCGTGGCGTCGCCCGGACCCGCCTGAGCGCCGAAGGCCGGGGCCAAAC
CCAGCCCGTCGCGGACAATTCGACCGAGGCTGGCCGTGCCCAAAATCGTCGCGTCGAAATTTTCTTGAAACCAATTTCTG
GGTGA

Upstream 100 bases:

>100_bases
GACTCCGCTTCTAATATGGATATGTGGGGTTGAGGCACGCAATGCTAACAAAGTCGCCCACACGATATGGTCTTGTGGCC
CGCGCCGCCGGGAAACCCCT

Downstream 100 bases:

>100_bases
CCAGTCATAGAGTTCAGGTACCGCTTGCCACCGTTGCTGGCTCGCGATGGGTGGCTGACCTCCCGGGCGGTACCTGATTT
CTCCTCCTTTTCCGTTGTGG

Product: outer membrane protein, OmpA/MotB family(modular protein)

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 294; Mature: 293

Protein sequence:

>294_residues
MPSAELQTITSLTVSGLCTRRHMPIVVRQSWDPACRQAVCGIVLSVFDCIMKVVLPVGGITRQALTCRMALAKHLRESPE
GESMNFKLVTVSLVAAAALAGCATEQQTNTAVGTGVGAAVGAGIGNLIGGNTTGTLVGAAVGGALGGATGYNWNAIRGKL
NKDTAGTGTQITEQPDGSLKVNIPSQVTFDTDSSTIKPSFRNVLDQVAQTLAQHQDVSANVVGHTDSTGNPQYNMQLSQR
RAQSVAGYLGDRGVARTRLSAEGRGQTQPVADNSTEAGRAQNRRVEIFLKPISG

Sequences:

>Translated_294_residues
MPSAELQTITSLTVSGLCTRRHMPIVVRQSWDPACRQAVCGIVLSVFDCIMKVVLPVGGITRQALTCRMALAKHLRESPE
GESMNFKLVTVSLVAAAALAGCATEQQTNTAVGTGVGAAVGAGIGNLIGGNTTGTLVGAAVGGALGGATGYNWNAIRGKL
NKDTAGTGTQITEQPDGSLKVNIPSQVTFDTDSSTIKPSFRNVLDQVAQTLAQHQDVSANVVGHTDSTGNPQYNMQLSQR
RAQSVAGYLGDRGVARTRLSAEGRGQTQPVADNSTEAGRAQNRRVEIFLKPISG
>Mature_293_residues
PSAELQTITSLTVSGLCTRRHMPIVVRQSWDPACRQAVCGIVLSVFDCIMKVVLPVGGITRQALTCRMALAKHLRESPEG
ESMNFKLVTVSLVAAAALAGCATEQQTNTAVGTGVGAAVGAGIGNLIGGNTTGTLVGAAVGGALGGATGYNWNAIRGKLN
KDTAGTGTQITEQPDGSLKVNIPSQVTFDTDSSTIKPSFRNVLDQVAQTLAQHQDVSANVVGHTDSTGNPQYNMQLSQRR
AQSVAGYLGDRGVARTRLSAEGRGQTQPVADNSTEAGRAQNRRVEIFLKPISG

Specific function: Unknown

COG id: COG2885

COG function: function code M; Outer membrane protein and related peptidoglycan-associated (lipo)proteins

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein (Potential). Cell inner membrane; Lipid-anchor (Probable) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 OmpA-like domain [H]

Homologues:

Organism=Escherichia coli, GI48994946, Length=214, Percent_Identity=42.9906542056075, Blast_Score=130, Evalue=1e-31,
Organism=Escherichia coli, GI1787191, Length=122, Percent_Identity=36.8852459016393, Blast_Score=74, Evalue=1e-14,
Organism=Escherichia coli, GI1786962, Length=98, Percent_Identity=35.7142857142857, Blast_Score=69, Evalue=3e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001035
- InterPro:   IPR006664
- InterPro:   IPR006690
- InterPro:   IPR006665 [H]

Pfam domain/function: PF00691 OmpA [H]

EC number: NA

Molecular weight: Translated: 30587; Mature: 30456

Theoretical pI: Translated: 9.10; Mature: 9.10

Prosite motif: PS01068 OMPA_1 ; PS51123 OMPA_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.0 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
4.1 %Cys+Met (Translated Protein)
2.0 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPSAELQTITSLTVSGLCTRRHMPIVVRQSWDPACRQAVCGIVLSVFDCIMKVVLPVGGI
CCCCHHHHHHHHHHHHHHHCCCCCEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCH
TRQALTCRMALAKHLRESPEGESMNFKLVTVSLVAAAALAGCATEQQTNTAVGTGVGAAV
HHHHHHHHHHHHHHHHCCCCCCCCEEEEHHHHHHHHHHHHHHCCCCCCCCHHHCCCHHHH
GAGIGNLIGGNTTGTLVGAAVGGALGGATGYNWNAIRGKLNKDTAGTGTQITEQPDGSLK
HCCHHHHCCCCCCHHHHHHHHHHHHCCCCCCCCHHHCCCCCCCCCCCCCEECCCCCCCEE
VNIPSQVTFDTDSSTIKPSFRNVLDQVAQTLAQHQDVSANVVGHTDSTGNPQYNMQLSQR
EECCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCCCCCCCHHHHHH
RAQSVAGYLGDRGVARTRLSAEGRGQTQPVADNSTEAGRAQNRRVEIFLKPISG
HHHHHHHHHCCCCHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEECCC
>Mature Secondary Structure 
PSAELQTITSLTVSGLCTRRHMPIVVRQSWDPACRQAVCGIVLSVFDCIMKVVLPVGGI
CCCHHHHHHHHHHHHHHHCCCCCEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCH
TRQALTCRMALAKHLRESPEGESMNFKLVTVSLVAAAALAGCATEQQTNTAVGTGVGAAV
HHHHHHHHHHHHHHHHCCCCCCCCEEEEHHHHHHHHHHHHHHCCCCCCCCHHHCCCHHHH
GAGIGNLIGGNTTGTLVGAAVGGALGGATGYNWNAIRGKLNKDTAGTGTQITEQPDGSLK
HCCHHHHCCCCCCHHHHHHHHHHHHCCCCCCCCHHHCCCCCCCCCCCCCEECCCCCCCEE
VNIPSQVTFDTDSSTIKPSFRNVLDQVAQTLAQHQDVSANVVGHTDSTGNPQYNMQLSQR
EECCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCCCCCCCHHHHHH
RAQSVAGYLGDRGVARTRLSAEGRGQTQPVADNSTEAGRAQNRRVEIFLKPISG
HHHHHHHHHCCCCHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEECCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 8041620; 9278503; 2180922 [H]