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The map label for this gene is yqgF [C]

Identifier: 94311674

GI number: 94311674

Start: 2977750

End: 2978199

Strand: Reverse

Name: yqgF [C]

Synonym: Rmet_2742

Alternate gene names: 94311674

Gene position: 2978199-2977750 (Counterclockwise)

Preceding gene: 94311675

Following gene: 94311673

Centisome position: 75.82

GC content: 64.22

Gene sequence:

>450_bases
GTGACGCGGGACATGCCTGACCAGCTGGGGCGCGAGACGCCCCGCGACGGCACGGTGCTCGCCTTCGACTATGGCGAGAA
AAAAATCGGCGTGGCGCTCGGTAATTTCATCACCCGGCAAGCCAGCGCACTTACGATCCTTCCGAATGTGACGGTCGAGG
CCCGCTTCGACGCCGTTGGCGAACTGATTCGCCAGTGGACGCCGGTGCGACTCGTGGTCGGGATGCCGGTCAATCCGGAA
GCTGGCCCCGATGACGAAGAACAGCCCTCGATGCGGCTTGCGCGCCGCTTTGGAAACCAGTTGAACGGACGCTTCAATCT
GCCCGTGGAATGGGTGGACGAACGCTACTCCTCGCGCGCCGCCGCCATGGCTGGCGCCAAGCGAGGCGCGCTCGACGCCG
AGGCAGCCCGGATCATCCTGCAACAGTATTTCGACGAACTCCCGCTATGA

Upstream 100 bases:

>100_bases
ACCGTTCAGGCCGATCCCGAGATCATTTTCAGCGTGCCCCCCGAGGAGCGTTTTGCAGCGGCCATTCGCCTGCTCGGCAT
CGACATCTCGATGCTTTCGG

Downstream 100 bases:

>100_bases
CCCAGACCTCTACACCCGACGCCGAGGCGCTGTATCACGCGCTGCGCGACCAGGCCCAAGCCCTGATGCCCTCCAGCGAG
CGTGCGCGCTGGTCCGTCGC

Product: Holliday junction resolvase-like protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 149; Mature: 148

Protein sequence:

>149_residues
MTRDMPDQLGRETPRDGTVLAFDYGEKKIGVALGNFITRQASALTILPNVTVEARFDAVGELIRQWTPVRLVVGMPVNPE
AGPDDEEQPSMRLARRFGNQLNGRFNLPVEWVDERYSSRAAAMAGAKRGALDAEAARIILQQYFDELPL

Sequences:

>Translated_149_residues
MTRDMPDQLGRETPRDGTVLAFDYGEKKIGVALGNFITRQASALTILPNVTVEARFDAVGELIRQWTPVRLVVGMPVNPE
AGPDDEEQPSMRLARRFGNQLNGRFNLPVEWVDERYSSRAAAMAGAKRGALDAEAARIILQQYFDELPL
>Mature_148_residues
TRDMPDQLGRETPRDGTVLAFDYGEKKIGVALGNFITRQASALTILPNVTVEARFDAVGELIRQWTPVRLVVGMPVNPEA
GPDDEEQPSMRLARRFGNQLNGRFNLPVEWVDERYSSRAAAMAGAKRGALDAEAARIILQQYFDELPL

Specific function: Could be a nuclease that resolves Holliday junction intermediates in genetic recombination

COG id: COG0816

COG function: function code L; Predicted endonuclease involved in recombination (possible Holliday junction resolvase in Mycoplasmas and B. subtilis)

Gene ontology:

Cell location: Cytoplasm (Potential)

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the yqgF HJR family

Homologues:

Organism=Escherichia coli, GI1789318, Length=139, Percent_Identity=35.2517985611511, Blast_Score=85, Evalue=2e-18,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RUVX_RALME (Q1LJR1)

Other databases:

- EMBL:   CP000352
- RefSeq:   YP_584884.1
- ProteinModelPortal:   Q1LJR1
- SMR:   Q1LJR1
- STRING:   Q1LJR1
- GeneID:   4039568
- GenomeReviews:   CP000352_GR
- KEGG:   rme:Rmet_2742
- eggNOG:   COG0816
- HOGENOM:   HBG607919
- OMA:   ESYFENQ
- PhylomeDB:   Q1LJR1
- ProtClustDB:   PRK00109
- BioCyc:   RMET266264:RMET_2742-MONOMER
- GO:   GO:0005737
- HAMAP:   MF_00651
- InterPro:   IPR005227
- InterPro:   IPR006641
- InterPro:   IPR012337
- Gene3D:   G3DSA:3.30.420.140
- SMART:   SM00732
- TIGRFAMs:   TIGR00250

Pfam domain/function: PF03652 UPF0081; SSF53098 RNaseH_fold

EC number: NA

Molecular weight: Translated: 16573; Mature: 16442

Theoretical pI: Translated: 4.80; Mature: 4.80

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.4 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTRDMPDQLGRETPRDGTVLAFDYGEKKIGVALGNFITRQASALTILPNVTVEARFDAVG
CCCCCCHHHCCCCCCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEECCCCEEEHHHHHHH
ELIRQWTPVRLVVGMPVNPEAGPDDEEQPSMRLARRFGNQLNGRFNLPVEWVDERYSSRA
HHHHCCCCEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHCCCEECCCHHHHHHHHHHHH
AAMAGAKRGALDAEAARIILQQYFDELPL
HHHHCCCCCCCHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure 
TRDMPDQLGRETPRDGTVLAFDYGEKKIGVALGNFITRQASALTILPNVTVEARFDAVG
CCCCCHHHCCCCCCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEECCCCEEEHHHHHHH
ELIRQWTPVRLVVGMPVNPEAGPDDEEQPSMRLARRFGNQLNGRFNLPVEWVDERYSSRA
HHHHCCCCEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHCCCEECCCHHHHHHHHHHHH
AAMAGAKRGALDAEAARIILQQYFDELPL
HHHHCCCCCCCHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA