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The map label for this gene is phoD [H]

Identifier: 94311549

GI number: 94311549

Start: 2842060

End: 2844099

Strand: Direct

Name: phoD [H]

Synonym: Rmet_2613

Alternate gene names: 94311549

Gene position: 2842060-2844099 (Clockwise)

Preceding gene: 94311548

Following gene: 335055616

Centisome position: 72.35

GC content: 64.46

Gene sequence:

>2040_bases
GTGGATCGCCGCAAATTTCTGCAATGGGGAAGTTTCGTCACCGTGACGGTGGCCACCACCGGCCTGGCCGGCTGCGGTGG
TGACGACAACGCCTCGCCCGCCACCCCCTCGACCAATCCGCCCACGACGCCGCCCGCCAGCGAGCCGGGCAACACGTTCA
CGTTCCAGCAAGGCGTGGCATCCGGCGACCCGAAACCCGATAGCGTCGTGCTCTGGACGCGCGTGGACGGCAACAACGGC
AGCAAGCCCGTCAACGTGCAACTGCAGGTGTCGACACAGGCGGACTTCAGCACGCTGATCGTCAACAGCACACTGGCTGC
CTCGCCTGACTGGGACTACACGCTGCGCAACAAGGTGACGGGCCTGTCCGCCGGCACCACGTACTACTACCGTTTCCAGG
TTGGCAATCAGACCAGTCCCGTGGGCCGCACCAAGACCGCGCCCGCCGCCGGCACGCCACTGTCGCAACTGAAGTTCGCC
TTCATCACCTGCCAGGACTGGAGCGTGAATCACTGGGCCGGCATGGAGGAGCTTGTCAACGAAGACCTCGATTTCGTGGT
CCACATGGGCGACTACATCTACGAGACCGTCGGCGCGGCGTTCCAGACCGGCAAGGTGGAAACGCGCCACGCACAATTGA
CGCTGCCCAATGGCACGCTGCGCGACGATGGCGCCCACTACGCGACCACGATCGACGACTATCGCTACCTCTACAAGTCA
TATCGCAGCGATCCGCGTCTGCAGGCGCTGCACGCGCGCTTTCCCGTGATCGCAATCTGGGACGACCACGAATTCTCCGA
CGACTGTTGGCAGGACCATCAGACCTATACCGCCGCTGACGATGCCACGCCGCGCACCGCGCGCCGGCGCGCGGCGAACC
AGGCGTGGTTCGAGTTCATGCCAGCCGACGTCAGCTTCGACCAGGCGGATACGTCGTTCCACAACATCCAGATCTACCGT
TCGTTCACGTTCGGCAACCTGGCCACGCTGGTGATGACGGACGAGCGGCTCTATCGCGCCGATCATGTGATTCCGGAACA
GGCGGCGGGCAGCGAAATCGGCAGCCGCTACTTCGTGCCGAAGACCACGCTGGCCGCGCTGGAGGGCAGCAAGCTGGCCG
CCGCTGGTGGCGCGCTGACGCCGGTGTCGATACTTGGCGACACCCAACGCGGCTGGTGGCAACAGCAGATAGGCAATGCC
ACGACCACGTGGAAGCTGTGGGGCAACGAGGTCTCGTTGCTACGCATGCAGATTGACGGGGCGCTGGCGGTCGGATCGTT
GCTGGCCGACGCCGTGATCGCGCAAATTCCCGCGCTGGGATCGCAGAAGCGGCCCCTGACCGGCGCCATTGCGCAGGATC
TGAAGGACGCAAAGGCCGCCAACAGCTACCAGGCACCGGCCTTTACCCAGTTGCGCGGCCTGCTGGCGGGACTGACCGTG
CCCGCGCTCCAGATCAACGCCATCGTGGCCGCGCTGACCAGTGGTCTGCCGCCTGCGATGCTGATCGACCAGTTCATTCT
CAACGCCGACCAGTGGGATGGCTACAACGCCGAGCGCAAGGCCATGATGGCCTTCCTGAAGATGCAGCGCATCAGCAATG
TGGTGGCGCTGACCGGCGACATCCACGCGTTCTTCGCGGGCCCGGTCATGGACGACTACGACGCCGCGACGCCAGTCCCG
GTCATGGTGGATCTGGTCACGGCGGGTCTGTCGAGCAACTCGTTCCAGAGCTACTTCAAGAGCGTGGTAGACAGCGACGC
AGCATTCGCGGACGCAAAACCGCTGGTCTACACGACCGATGGCAACGGGGCGATGGTGAACACGTTCAACACGACGCTGA
CGTCGTTTAATCCGTGGCTGACGTATGTGAACTCCGACGCGCAGGGTTACGCGGTGGTGACGCTGGCGGCTTCGAAGCTG
AGTTGCAGCTTTCACAAGCTCAAGCCAATCGCGGACGGCGTGGCCCCGGCGATGCCGGCGACAGCCAGTGTGCAGGTGGT
GGAGGTTGCGGCGGGAACGCCTGCGGTGACGCTGGCCTGA

Upstream 100 bases:

>100_bases
AGAAAAGCGCTAATCGAGCTGACATCCAGACACATGGCGGTCACGGGACCACCGAACAATTTGCGATTCCTGCATCACAT
AACAAGGAAGGGAACGCAAA

Downstream 100 bases:

>100_bases
TACCAGTTTGATGCGGCAATGCGCCCCTCTCCCACACGTGGGCGAGGGGCGAAAAACTAGCGACTGTTACTGATGCCGCT
TGTCGTGCTCGATCACAGCA

Product: alkaline phosphatase

Products: NA

Alternate protein names: APaseD [H]

Number of amino acids: Translated: 679; Mature: 679

Protein sequence:

>679_residues
MDRRKFLQWGSFVTVTVATTGLAGCGGDDNASPATPSTNPPTTPPASEPGNTFTFQQGVASGDPKPDSVVLWTRVDGNNG
SKPVNVQLQVSTQADFSTLIVNSTLAASPDWDYTLRNKVTGLSAGTTYYYRFQVGNQTSPVGRTKTAPAAGTPLSQLKFA
FITCQDWSVNHWAGMEELVNEDLDFVVHMGDYIYETVGAAFQTGKVETRHAQLTLPNGTLRDDGAHYATTIDDYRYLYKS
YRSDPRLQALHARFPVIAIWDDHEFSDDCWQDHQTYTAADDATPRTARRRAANQAWFEFMPADVSFDQADTSFHNIQIYR
SFTFGNLATLVMTDERLYRADHVIPEQAAGSEIGSRYFVPKTTLAALEGSKLAAAGGALTPVSILGDTQRGWWQQQIGNA
TTTWKLWGNEVSLLRMQIDGALAVGSLLADAVIAQIPALGSQKRPLTGAIAQDLKDAKAANSYQAPAFTQLRGLLAGLTV
PALQINAIVAALTSGLPPAMLIDQFILNADQWDGYNAERKAMMAFLKMQRISNVVALTGDIHAFFAGPVMDDYDAATPVP
VMVDLVTAGLSSNSFQSYFKSVVDSDAAFADAKPLVYTTDGNGAMVNTFNTTLTSFNPWLTYVNSDAQGYAVVTLAASKL
SCSFHKLKPIADGVAPAMPATASVQVVEVAAGTPAVTLA

Sequences:

>Translated_679_residues
MDRRKFLQWGSFVTVTVATTGLAGCGGDDNASPATPSTNPPTTPPASEPGNTFTFQQGVASGDPKPDSVVLWTRVDGNNG
SKPVNVQLQVSTQADFSTLIVNSTLAASPDWDYTLRNKVTGLSAGTTYYYRFQVGNQTSPVGRTKTAPAAGTPLSQLKFA
FITCQDWSVNHWAGMEELVNEDLDFVVHMGDYIYETVGAAFQTGKVETRHAQLTLPNGTLRDDGAHYATTIDDYRYLYKS
YRSDPRLQALHARFPVIAIWDDHEFSDDCWQDHQTYTAADDATPRTARRRAANQAWFEFMPADVSFDQADTSFHNIQIYR
SFTFGNLATLVMTDERLYRADHVIPEQAAGSEIGSRYFVPKTTLAALEGSKLAAAGGALTPVSILGDTQRGWWQQQIGNA
TTTWKLWGNEVSLLRMQIDGALAVGSLLADAVIAQIPALGSQKRPLTGAIAQDLKDAKAANSYQAPAFTQLRGLLAGLTV
PALQINAIVAALTSGLPPAMLIDQFILNADQWDGYNAERKAMMAFLKMQRISNVVALTGDIHAFFAGPVMDDYDAATPVP
VMVDLVTAGLSSNSFQSYFKSVVDSDAAFADAKPLVYTTDGNGAMVNTFNTTLTSFNPWLTYVNSDAQGYAVVTLAASKL
SCSFHKLKPIADGVAPAMPATASVQVVEVAAGTPAVTLA
>Mature_679_residues
MDRRKFLQWGSFVTVTVATTGLAGCGGDDNASPATPSTNPPTTPPASEPGNTFTFQQGVASGDPKPDSVVLWTRVDGNNG
SKPVNVQLQVSTQADFSTLIVNSTLAASPDWDYTLRNKVTGLSAGTTYYYRFQVGNQTSPVGRTKTAPAAGTPLSQLKFA
FITCQDWSVNHWAGMEELVNEDLDFVVHMGDYIYETVGAAFQTGKVETRHAQLTLPNGTLRDDGAHYATTIDDYRYLYKS
YRSDPRLQALHARFPVIAIWDDHEFSDDCWQDHQTYTAADDATPRTARRRAANQAWFEFMPADVSFDQADTSFHNIQIYR
SFTFGNLATLVMTDERLYRADHVIPEQAAGSEIGSRYFVPKTTLAALEGSKLAAAGGALTPVSILGDTQRGWWQQQIGNA
TTTWKLWGNEVSLLRMQIDGALAVGSLLADAVIAQIPALGSQKRPLTGAIAQDLKDAKAANSYQAPAFTQLRGLLAGLTV
PALQINAIVAALTSGLPPAMLIDQFILNADQWDGYNAERKAMMAFLKMQRISNVVALTGDIHAFFAGPVMDDYDAATPVP
VMVDLVTAGLSSNSFQSYFKSVVDSDAAFADAKPLVYTTDGNGAMVNTFNTTLTSFNPWLTYVNSDAQGYAVVTLAASKL
SCSFHKLKPIADGVAPAMPATASVQVVEVAAGTPAVTLA

Specific function: Unknown

COG id: COG3540

COG function: function code P; Phosphodiesterase/alkaline phosphatase D

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the PhoD family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR018946
- InterPro:   IPR006311 [H]

Pfam domain/function: PF09423 PhoD [H]

EC number: =3.1.3.1 [H]

Molecular weight: Translated: 73193; Mature: 73193

Theoretical pI: Translated: 4.92; Mature: 4.92

Prosite motif: PS00013 PROKAR_LIPOPROTEIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDRRKFLQWGSFVTVTVATTGLAGCGGDDNASPATPSTNPPTTPPASEPGNTFTFQQGVA
CCHHHHHHCCCEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCC
SGDPKPDSVVLWTRVDGNNGSKPVNVQLQVSTQADFSTLIVNSTLAASPDWDYTLRNKVT
CCCCCCCCEEEEEEECCCCCCCCEEEEEEEECCCCCEEEEEECEECCCCCCCEEHHCCCC
GLSAGTTYYYRFQVGNQTSPVGRTKTAPAAGTPLSQLKFAFITCQDWSVNHWAGMEELVN
CCCCCCEEEEEEEECCCCCCCCCCCCCCCCCCCHHHEEEEEEEEECCCCHHHCCHHHHHC
EDLDFVVHMGDYIYETVGAAFQTGKVETRHAQLTLPNGTLRDDGAHYATTIDDYRYLYKS
CCCCEEEEHHHHHHHHHHHHHHCCCEEEEEEEEECCCCCCCCCCCEEEEEHHHHHHHHHH
YRSDPRLQALHARFPVIAIWDDHEFSDDCWQDHQTYTAADDATPRTARRRAANQAWFEFM
HCCCCCHHHHHCCCCEEEEECCCCCCHHHHHCCCCEECCCCCCCHHHHHHHHHHHHHEEE
PADVSFDQADTSFHNIQIYRSFTFGNLATLVMTDERLYRADHVIPEQAAGSEIGSRYFVP
CCCCCCCCCCCCEEEEEEEEEECCCCEEEEEEECHHHHHHHCCCCCHHCCCHHCCEEECC
KTTLAALEGSKLAAAGGALTPVSILGDTQRGWWQQQIGNATTTWKLWGNEVSLLRMQIDG
CHHHHHHCCCCEEECCCCCCCHHEECCCCCCHHHHHHCCCCEEEEEECCCEEEEEEEECC
ALAVGSLLADAVIAQIPALGSQKRPLTGAIAQDLKDAKAANSYQAPAFTQLRGLLAGLTV
HHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHCCC
PALQINAIVAALTSGLPPAMLIDQFILNADQWDGYNAERKAMMAFLKMQRISNVVALTGD
CHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHCCEEEEECC
IHAFFAGPVMDDYDAATPVPVMVDLVTAGLSSNSFQSYFKSVVDSDAAFADAKPLVYTTD
EEEEEECCCCCCCCCCCCCHHHHHHHHHCCCCCHHHHHHHHHHCCCCCCCCCCCEEEEEC
GNGAMVNTFNTTLTSFNPWLTYVNSDAQGYAVVTLAASKLSCSFHKLKPIADGVAPAMPA
CCCEEEEEECCEECCCCCEEEEECCCCCCEEEEEEEECHHCCCHHHCCHHHCCCCCCCCC
TASVQVVEVAAGTPAVTLA
CCCEEEEEEECCCCEEEEC
>Mature Secondary Structure
MDRRKFLQWGSFVTVTVATTGLAGCGGDDNASPATPSTNPPTTPPASEPGNTFTFQQGVA
CCHHHHHHCCCEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCC
SGDPKPDSVVLWTRVDGNNGSKPVNVQLQVSTQADFSTLIVNSTLAASPDWDYTLRNKVT
CCCCCCCCEEEEEEECCCCCCCCEEEEEEEECCCCCEEEEEECEECCCCCCCEEHHCCCC
GLSAGTTYYYRFQVGNQTSPVGRTKTAPAAGTPLSQLKFAFITCQDWSVNHWAGMEELVN
CCCCCCEEEEEEEECCCCCCCCCCCCCCCCCCCHHHEEEEEEEEECCCCHHHCCHHHHHC
EDLDFVVHMGDYIYETVGAAFQTGKVETRHAQLTLPNGTLRDDGAHYATTIDDYRYLYKS
CCCCEEEEHHHHHHHHHHHHHHCCCEEEEEEEEECCCCCCCCCCCEEEEEHHHHHHHHHH
YRSDPRLQALHARFPVIAIWDDHEFSDDCWQDHQTYTAADDATPRTARRRAANQAWFEFM
HCCCCCHHHHHCCCCEEEEECCCCCCHHHHHCCCCEECCCCCCCHHHHHHHHHHHHHEEE
PADVSFDQADTSFHNIQIYRSFTFGNLATLVMTDERLYRADHVIPEQAAGSEIGSRYFVP
CCCCCCCCCCCCEEEEEEEEEECCCCEEEEEEECHHHHHHHCCCCCHHCCCHHCCEEECC
KTTLAALEGSKLAAAGGALTPVSILGDTQRGWWQQQIGNATTTWKLWGNEVSLLRMQIDG
CHHHHHHCCCCEEECCCCCCCHHEECCCCCCHHHHHHCCCCEEEEEECCCEEEEEEEECC
ALAVGSLLADAVIAQIPALGSQKRPLTGAIAQDLKDAKAANSYQAPAFTQLRGLLAGLTV
HHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHCCC
PALQINAIVAALTSGLPPAMLIDQFILNADQWDGYNAERKAMMAFLKMQRISNVVALTGD
CHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHCCEEEEECC
IHAFFAGPVMDDYDAATPVPVMVDLVTAGLSSNSFQSYFKSVVDSDAAFADAKPLVYTTD
EEEEEECCCCCCCCCCCCCHHHHHHHHHCCCCCHHHHHHHHHHCCCCCCCCCCCEEEEEC
GNGAMVNTFNTTLTSFNPWLTYVNSDAQGYAVVTLAASKLSCSFHKLKPIADGVAPAMPA
CCCEEEEEECCEECCCCCEEEEECCCCCCEEEEEEEECHHCCCHHHCCHHHCCCCCCCCC
TASVQVVEVAAGTPAVTLA
CCCEEEEEEECCCCEEEEC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8760916; 9384377; 7704254; 25878 [H]