Click here to switch to the map view.

The map label for this gene is yfdE [H]

Identifier: 94311472

GI number: 94311472

Start: 2760930

End: 2762051

Strand: Direct

Name: yfdE [H]

Synonym: Rmet_2536

Alternate gene names: 94311472

Gene position: 2760930-2762051 (Clockwise)

Preceding gene: 94311471

Following gene: 94311473

Centisome position: 70.29

GC content: 66.4

Gene sequence:

>1122_bases
ATGCTGTCTGGCATCAGGATTGTGGAAATCTGTGGGATCGGCCCGGGCCCGTTTTGCGCAATGCACCTTGCGGACCTCGG
CGCGGACGTGATTGCGATAGAGCGCACGGCCTCCGGAGAGTCCGGCGCTCCGGCAGACGGCAGCGTGCTCAATCGCGGCA
AGCGTTCAGTGGTTGCCGACCTGAAGACGGCCGAAGGCCGGGAGCTGGTGCTGCGCCTGATCGAAGATGCGGATGCGCTG
ATCGAAGGCATGCGTCCGGGCGTCATGGAGCGCCTCGGGCTCGGGCCTGACGTGCTCCAGCAGCGCAACCCCCGCCTGGT
CTACGGCCGCATGACAGGCTGGGGCCAGTACGGTCCACTGGCACAAGCTGCCGGGCACGACAACAACTACATTTCGCTCT
CAGGCGCGCTCTACTACAATGGCGCCCCTTCCGAGCCGCCCTCCTCGGCCATCACACTGGTCGGTGATGTGGGCGGCGGC
GCGCTCTACCTCGCAATTGGCCTGCTGTCCGGCATCCTGAACGCACGCGCGACCGGCAAGGGTACGGTGGTCGATGCGGC
CATCACCGATGGCTCGGCCCACATGCTGCAACTACTGCTTGCCACGCGCAAGAAGGGCCTGGTGACGGGCGTGCGTGGCC
AGAACGTTCACGACAGCTCGCACTTCTTCGCCACCTATCGTTGCGCCGACGGCCACTTTGTCACGCTGGGCGCGCTTGAG
CCGCAGTTCTATGCCTTGCTGCTGCAAAAGCTCGGCCTGGCCGAGGACCCGCGCTTCGCCCGGCAATGGGATCGCCAACG
CTGGCCGGAACTGCATCGCCACTTTGCCGAGCTGTTTGCCAGCAGGACGCGTGCGGAATGGTGCGCGCTGCTCGAGAACA
CGGATGTCTGCTTCGGGCCGGTACTGAGCCCCGAAGAAGCCGCGGCGCATCCGCACAACGTCGCTCGCGGCGTGTACTTC
GAAAGCGACAGACAACTGCAGGCTGCGCCGGCACCGCGCTTCGACGGCCAGGCCCGGCGACCGGGGCCGATACCGACGCC
CGGCCAGCATACGGAAGAGATCGCGGCCATCCTTGCCGGCAAGGATGCGCACGGGCTATGGCATTCCCCCCGTGCAGGCT
GA

Upstream 100 bases:

>100_bases
GGCGCCAACGCGCCCTAAGCTTGGCTGGCCTGCCGTCCGGCACCGGCGCCGCAGCGACTGACACGTGCCAGCGGCTTCAC
CTCGGAGAACGAAGAACATC

Downstream 100 bases:

>100_bases
CCGGAGCCACCGCATGCGCCGCAGCACATACGCGGACAGTGCACGGGATTGCGCCACGGCGCAACGCGGGCGCCTGCAGC
CCCGGCTGTCCGCGCTGATC

Product: alpha-methylacyl-CoA racemase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 373; Mature: 373

Protein sequence:

>373_residues
MLSGIRIVEICGIGPGPFCAMHLADLGADVIAIERTASGESGAPADGSVLNRGKRSVVADLKTAEGRELVLRLIEDADAL
IEGMRPGVMERLGLGPDVLQQRNPRLVYGRMTGWGQYGPLAQAAGHDNNYISLSGALYYNGAPSEPPSSAITLVGDVGGG
ALYLAIGLLSGILNARATGKGTVVDAAITDGSAHMLQLLLATRKKGLVTGVRGQNVHDSSHFFATYRCADGHFVTLGALE
PQFYALLLQKLGLAEDPRFARQWDRQRWPELHRHFAELFASRTRAEWCALLENTDVCFGPVLSPEEAAAHPHNVARGVYF
ESDRQLQAAPAPRFDGQARRPGPIPTPGQHTEEIAAILAGKDAHGLWHSPRAG

Sequences:

>Translated_373_residues
MLSGIRIVEICGIGPGPFCAMHLADLGADVIAIERTASGESGAPADGSVLNRGKRSVVADLKTAEGRELVLRLIEDADAL
IEGMRPGVMERLGLGPDVLQQRNPRLVYGRMTGWGQYGPLAQAAGHDNNYISLSGALYYNGAPSEPPSSAITLVGDVGGG
ALYLAIGLLSGILNARATGKGTVVDAAITDGSAHMLQLLLATRKKGLVTGVRGQNVHDSSHFFATYRCADGHFVTLGALE
PQFYALLLQKLGLAEDPRFARQWDRQRWPELHRHFAELFASRTRAEWCALLENTDVCFGPVLSPEEAAAHPHNVARGVYF
ESDRQLQAAPAPRFDGQARRPGPIPTPGQHTEEIAAILAGKDAHGLWHSPRAG
>Mature_373_residues
MLSGIRIVEICGIGPGPFCAMHLADLGADVIAIERTASGESGAPADGSVLNRGKRSVVADLKTAEGRELVLRLIEDADAL
IEGMRPGVMERLGLGPDVLQQRNPRLVYGRMTGWGQYGPLAQAAGHDNNYISLSGALYYNGAPSEPPSSAITLVGDVGGG
ALYLAIGLLSGILNARATGKGTVVDAAITDGSAHMLQLLLATRKKGLVTGVRGQNVHDSSHFFATYRCADGHFVTLGALE
PQFYALLLQKLGLAEDPRFARQWDRQRWPELHRHFAELFASRTRAEWCALLENTDVCFGPVLSPEEAAAHPHNVARGVYF
ESDRQLQAAPAPRFDGQARRPGPIPTPGQHTEEIAAILAGKDAHGLWHSPRAG

Specific function: Unknown

COG id: COG1804

COG function: function code C; Predicted acyl-CoA transferases/carnitine dehydratase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the CaiB/BaiF CoA-transferase family [H]

Homologues:

Organism=Homo sapiens, GI42794625, Length=357, Percent_Identity=44.2577030812325, Blast_Score=303, Evalue=3e-82,
Organism=Homo sapiens, GI266456254, Length=357, Percent_Identity=44.2577030812325, Blast_Score=302, Evalue=4e-82,
Organism=Homo sapiens, GI266458393, Length=252, Percent_Identity=46.4285714285714, Blast_Score=228, Evalue=1e-59,
Organism=Homo sapiens, GI266458397, Length=249, Percent_Identity=46.1847389558233, Blast_Score=224, Evalue=9e-59,
Organism=Homo sapiens, GI300863128, Length=375, Percent_Identity=26.9333333333333, Blast_Score=142, Evalue=5e-34,
Organism=Homo sapiens, GI300863124, Length=353, Percent_Identity=27.4787535410765, Blast_Score=139, Evalue=5e-33,
Organism=Homo sapiens, GI42822893, Length=134, Percent_Identity=51.4925373134328, Blast_Score=138, Evalue=8e-33,
Organism=Homo sapiens, GI266458395, Length=134, Percent_Identity=51.4925373134328, Blast_Score=138, Evalue=8e-33,
Organism=Homo sapiens, GI300863126, Length=375, Percent_Identity=24.5333333333333, Blast_Score=110, Evalue=3e-24,
Organism=Homo sapiens, GI13376042, Length=353, Percent_Identity=24.929178470255, Blast_Score=104, Evalue=1e-22,
Organism=Escherichia coli, GI87082093, Length=373, Percent_Identity=30.2949061662198, Blast_Score=145, Evalue=5e-36,
Organism=Escherichia coli, GI1788717, Length=363, Percent_Identity=26.4462809917355, Blast_Score=104, Evalue=8e-24,
Organism=Escherichia coli, GI1786222, Length=379, Percent_Identity=27.9683377308707, Blast_Score=92, Evalue=8e-20,
Organism=Caenorhabditis elegans, GI115535051, Length=340, Percent_Identity=33.5294117647059, Blast_Score=192, Evalue=2e-49,
Organism=Caenorhabditis elegans, GI32564160, Length=343, Percent_Identity=32.3615160349854, Blast_Score=183, Evalue=1e-46,
Organism=Drosophila melanogaster, GI24585488, Length=354, Percent_Identity=40.3954802259887, Blast_Score=256, Evalue=2e-68,
Organism=Drosophila melanogaster, GI24648431, Length=381, Percent_Identity=30.7086614173228, Blast_Score=145, Evalue=4e-35,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003673 [H]

Pfam domain/function: PF02515 CoA_transf_3 [H]

EC number: NA

Molecular weight: Translated: 39868; Mature: 39868

Theoretical pI: Translated: 6.84; Mature: 6.84

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLSGIRIVEICGIGPGPFCAMHLADLGADVIAIERTASGESGAPADGSVLNRGKRSVVAD
CCCCCEEEEEECCCCCHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCHHHHCCCHHHHHH
LKTAEGRELVLRLIEDADALIEGMRPGVMERLGLGPDVLQQRNPRLVYGRMTGWGQYGPL
HHCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHCCCHHHHHCCCCEEEEEECCCCCCCCCH
AQAAGHDNNYISLSGALYYNGAPSEPPSSAITLVGDVGGGALYLAIGLLSGILNARATGK
HHHCCCCCCEEEEEEEEEECCCCCCCCCCEEEEEEECCCHHHHHHHHHHHHHHHCCCCCC
GTVVDAAITDGSAHMLQLLLATRKKGLVTGVRGQNVHDSSHFFATYRCADGHFVTLGALE
CEEEEEEECCCHHHHHHHHHHHHHCCCEECCCCCCCCCCCCEEEEEEECCCCEEEEECCC
PQFYALLLQKLGLAEDPRFARQWDRQRWPELHRHFAELFASRTRAEWCALLENTDVCFGP
HHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEECC
VLSPEEAAAHPHNVARGVYFESDRQLQAAPAPRFDGQARRPGPIPTPGQHTEEIAAILAG
CCCCHHHHCCCCHHHCCCEECCCCCEECCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCC
KDAHGLWHSPRAG
CCCCCCCCCCCCC
>Mature Secondary Structure
MLSGIRIVEICGIGPGPFCAMHLADLGADVIAIERTASGESGAPADGSVLNRGKRSVVAD
CCCCCEEEEEECCCCCHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCHHHHCCCHHHHHH
LKTAEGRELVLRLIEDADALIEGMRPGVMERLGLGPDVLQQRNPRLVYGRMTGWGQYGPL
HHCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHCCCHHHHHCCCCEEEEEECCCCCCCCCH
AQAAGHDNNYISLSGALYYNGAPSEPPSSAITLVGDVGGGALYLAIGLLSGILNARATGK
HHHCCCCCCEEEEEEEEEECCCCCCCCCCEEEEEEECCCHHHHHHHHHHHHHHHCCCCCC
GTVVDAAITDGSAHMLQLLLATRKKGLVTGVRGQNVHDSSHFFATYRCADGHFVTLGALE
CEEEEEEECCCHHHHHHHHHHHHHCCCEECCCCCCCCCCCCEEEEEEECCCCEEEEECCC
PQFYALLLQKLGLAEDPRFARQWDRQRWPELHRHFAELFASRTRAEWCALLENTDVCFGP
HHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEECC
VLSPEEAAAHPHNVARGVYFESDRQLQAAPAPRFDGQARRPGPIPTPGQHTEEIAAILAG
CCCCHHHHCCCCHHHCCCEECCCCCEECCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCC
KDAHGLWHSPRAG
CCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9205837; 9278503; 8125343 [H]