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The map label for this gene is ybfI [H]

Identifier: 94311389

GI number: 94311389

Start: 2664867

End: 2665706

Strand: Direct

Name: ybfI [H]

Synonym: Rmet_2453

Alternate gene names: 94311389

Gene position: 2664867-2665706 (Clockwise)

Preceding gene: 94311388

Following gene: 94311390

Centisome position: 67.84

GC content: 64.05

Gene sequence:

>840_bases
GTGAGCCCCCAAAGCTGGATCGATCTCAGGCAGGATGCCAGCACTGGCATCGAGACGATTCGCGCCCATTTCACTGGCCA
CGCCTACGATCCTCACTGGCATGACAGCTACCTGGTCGGATACACCGAGCAGGGCATTCAGCAGTTCCACTGTCGCCGCG
AAGTCCAGCGCAGCACCCCCGGCAAGGTGTTCACGCTGGAGCCTGGCGAGATCCATGATGGCTACGCGGTGGCGCCGGAA
GGCTTCACCTACTCGATGCTCTATCTCGACGCACAGTGGATGGAGCGCGAGCTACGCGCCGTATTCGAGGACGCCCCAGC
GCACTGCCAACCCGGCTTTGCTCAGACCCTGAGAGAAGACCCTGCGCTGATCTCGGCCATCGGTAGCGCCTATACGGTCC
TGCAGCAGCCCGAATTGCGCATCGTCCGTCAGTCGGCACTCGATGCGCTGCTCGCCCAACTGACAGCGCATCTGCATTGG
CGCGCGCATCACGCATTCGACCCGCGCTTGCCCCTGGTGGCACAGCGGGCGCGCGACTATCTCCACGACCACCTTGATCA
CGATATCGGGCTCGATGACCTGGCTGCGATCAGCGGCGTGGATCGCTATCGACTGACACGCGCATTCAAAGCGGCATTCG
GCATCGCGCCGCATGCCTATCTGGTGCAGATGCGTCTGGCGCGCGCACGACACCTCCTGGCCCGAGGCGCAACGCCAGCC
GATGTCGCCGTCGCGCTCGGCTTTGCCGACCAGAGCCATCTGGGACGCTGGTTCCGGCGCGCCTATGGCCTGACACCCGC
GCACTACCGCAAGCGCTGCTCAAATCTTCCAGACGCGTGA

Upstream 100 bases:

>100_bases
TTTTGCGCGTCCGACACCCCTCCCCTGCACAAACGTTCCAGAGCCTTCGCATCAGACTGTATAAGATGCCCGCTCAAGGA
ACCGAAACGCAAAAATCGCT

Downstream 100 bases:

>100_bases
GACATCGGCCGCAACAATGGCCACATGCTCGACACGCTCCCTTTCCTTCCTTTCCTGCTTTTCGCGATCGTTGCGTCGAT
CACGCCCGGCCCGACCAACG

Product: AraC family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 279; Mature: 278

Protein sequence:

>279_residues
MSPQSWIDLRQDASTGIETIRAHFTGHAYDPHWHDSYLVGYTEQGIQQFHCRREVQRSTPGKVFTLEPGEIHDGYAVAPE
GFTYSMLYLDAQWMERELRAVFEDAPAHCQPGFAQTLREDPALISAIGSAYTVLQQPELRIVRQSALDALLAQLTAHLHW
RAHHAFDPRLPLVAQRARDYLHDHLDHDIGLDDLAAISGVDRYRLTRAFKAAFGIAPHAYLVQMRLARARHLLARGATPA
DVAVALGFADQSHLGRWFRRAYGLTPAHYRKRCSNLPDA

Sequences:

>Translated_279_residues
MSPQSWIDLRQDASTGIETIRAHFTGHAYDPHWHDSYLVGYTEQGIQQFHCRREVQRSTPGKVFTLEPGEIHDGYAVAPE
GFTYSMLYLDAQWMERELRAVFEDAPAHCQPGFAQTLREDPALISAIGSAYTVLQQPELRIVRQSALDALLAQLTAHLHW
RAHHAFDPRLPLVAQRARDYLHDHLDHDIGLDDLAAISGVDRYRLTRAFKAAFGIAPHAYLVQMRLARARHLLARGATPA
DVAVALGFADQSHLGRWFRRAYGLTPAHYRKRCSNLPDA
>Mature_278_residues
SPQSWIDLRQDASTGIETIRAHFTGHAYDPHWHDSYLVGYTEQGIQQFHCRREVQRSTPGKVFTLEPGEIHDGYAVAPEG
FTYSMLYLDAQWMERELRAVFEDAPAHCQPGFAQTLREDPALISAIGSAYTVLQQPELRIVRQSALDALLAQLTAHLHWR
AHHAFDPRLPLVAQRARDYLHDHLDHDIGLDDLAAISGVDRYRLTRAFKAAFGIAPHAYLVQMRLARARHLLARGATPAD
VAVALGFADQSHLGRWFRRAYGLTPAHYRKRCSNLPDA

Specific function: Positive Activator Of Genes Required For L-Rhamnose Utilization, Probably Of The Rhamnose Transporter Gene (Rhat). [C]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH araC/xylS-type DNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR003313
- InterPro:   IPR018060 [H]

Pfam domain/function: PF02311 AraC_binding; PF00165 HTH_AraC [H]

EC number: NA

Molecular weight: Translated: 31548; Mature: 31417

Theoretical pI: Translated: 7.34; Mature: 7.34

Prosite motif: PS01124 HTH_ARAC_FAMILY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
2.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSPQSWIDLRQDASTGIETIRAHFTGHAYDPHWHDSYLVGYTEQGIQQFHCRREVQRSTP
CCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEECCHHHHHHHHHHHHHHHHCCC
GKVFTLEPGEIHDGYAVAPEGFTYSMLYLDAQWMERELRAVFEDAPAHCQPGFAQTLRED
CCEEEECCCCCCCCEEECCCCCEEEHEEHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHCC
PALISAIGSAYTVLQQPELRIVRQSALDALLAQLTAHLHWRAHHAFDPRLPLVAQRARDY
HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHH
LHDHLDHDIGLDDLAAISGVDRYRLTRAFKAAFGIAPHAYLVQMRLARARHLLARGATPA
HHHHHCCCCCHHHHHHHHCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCH
DVAVALGFADQSHLGRWFRRAYGLTPAHYRKRCSNLPDA
HHHHHCCCCCHHHHHHHHHHHHCCCHHHHHHHHCCCCCC
>Mature Secondary Structure 
SPQSWIDLRQDASTGIETIRAHFTGHAYDPHWHDSYLVGYTEQGIQQFHCRREVQRSTP
CCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEECCHHHHHHHHHHHHHHHHCCC
GKVFTLEPGEIHDGYAVAPEGFTYSMLYLDAQWMERELRAVFEDAPAHCQPGFAQTLRED
CCEEEECCCCCCCCEEECCCCCEEEHEEHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHCC
PALISAIGSAYTVLQQPELRIVRQSALDALLAQLTAHLHWRAHHAFDPRLPLVAQRARDY
HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHH
LHDHLDHDIGLDDLAAISGVDRYRLTRAFKAAFGIAPHAYLVQMRLARARHLLARGATPA
HHHHHCCCCCHHHHHHHHCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCH
DVAVALGFADQSHLGRWFRRAYGLTPAHYRKRCSNLPDA
HHHHHCCCCCHHHHHHHHHHHHCCCHHHHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]