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The map label for this gene is virD4

Identifier: 94311272

GI number: 94311272

Start: 2548986

End: 2551175

Strand: Direct

Name: virD4

Synonym: Rmet_2336

Alternate gene names: NA

Gene position: 2548986-2551175 (Clockwise)

Preceding gene: 94311271

Following gene: 94311273

Centisome position: 64.89

GC content: 65.62

Gene sequence:

>2190_bases
ATGTCGGGCAAACAGCCGGTCGAGGTTCTGCTACGCCCAGCGGTGGAGCTATACACCGTCGCGGCGTGTGCAGGCGCCGC
GTTTCTGTGCCTGGTGGCCCCATGGTCGCTCGCGCTGAGCCCGGCCATGGGCATCGGCAGCGCCTTGGCGTTCGGCGCCT
ACGGCGCGATCCGCTACCGCGATGCCCGCATCATCCTGCGCTACCGGCGCAACATCCGCCGTCTGCCGCGTTACGTGATG
ACCAGCAAGGACGTGCCGGTCAGCCAGCAGCGCCTATTCGTGGGGCGCGGCTTTCTCTGGGAGCAGAAGCACACGCATCG
GCTGATGCAGACGTACCGGCCCGAGTTCCGCCGCTACGTCGAGCCGACGCCGGCCTACCGGCTGACCAGGCGCCTGGAGG
AACGGCTGGAGTTCGCGCCATTGCCGCTCTCGCGCCTGCCGAAGCTCACCGGCTGGGACGCGCCTTTCAACCCCGTGCGC
CCGTTGCCGCCTGTCGGCGGCCTGCCAAGGCTGCACGGCATCGAGCCCGACGAAGTGGACGTCAGCCTGCCGCTGGGCGA
GCGCGTCGGGCACTCGCTGGTGCTGGGCACCACGCGGGTGGGCAAGACGCGCCTGGCCGAGTTGTTCGTCACGCAGGACA
TCCGTCGCAGGAATGCTGCCGGCGAGCATGAGGTCGTCATCGTCATCGACCCCAAGGGGGATGCCGATCTCTTGAAACGG
ATGTACGTCGAAGCCCAGCGCGCTGGCCGCGAAGGCGAGTTCTACATCTTCCACTTGGGCTGGCCGGAAATCAGCGCCCG
CTACAACGCCGTGGGCCGCTTCGGTCGGATCTCGGAAGTGGCGACACGCATCGCGGGGCAGCTCTCCGGCGAAGGCAACA
GCGCGGCGTTCCGCGAGTTCGCATGGCGCTTCGTGAACATCATCGCCCGCGCCCTGGTGGAACTGGGGCAGCGCCCGGAC
TACATGCTGATCCAGCGCCACGTCATCAACATCGACGCGCTGTTCATTGAGTACGCCCAGCACTACTTTGCCAAGACGGA
GCCCAAGGCCTGGGAGGTGATCGTCCAGATCGAGGCCAAGCTCAACGAGAAGAACATCCCAAGGAACATGATCGGGCGCG
AGAAGCGTGTGGTGGCGCTGGAGCAATACCTCTCCCAGGCGCGCAACTACGACCCTGTGCTCGATGGCCTGCGCTCGGCG
GTGCGCTACGACAAGACCTACTTCGACAAGATCGTTGCATCGCTGCTGCCGCTGCTGGAAAAGCTCACGAGCGGCAAGAT
CGCCCAGCTCCTGGCGCCGAACTACTCCGACCTGGCCGACCCGCGCCCGATCTTCGACTGGATGCAGGTGATCAGGAAGC
GCGCCGTCGTCTATGTCGGCTTGGACGCGCTGTCCGATGCGGAGGTCGCCGCAGCGGTCGGCAACTCGATGTTCAGCGAT
CTCGTCTCGGTGGCTGGGCACATCTACAAGCACGGAATCGACGATGGCCTGCCGGGCGCATCGGCTGGTGCGCGCGTGCC
GATCAACGTGCATGCGGACGAGTTCAATGAATTGATGGGTGACGAGTTCATTCCGCTCATCAACAAGGGCGGTGGCGCGG
GCCTGCAAGTCACCGCCTACACGCAAACGCTTTCGGACATCGAGGCCCGCATCGGCAACCGCGCGAAGGCCGGCCAAGTG
ATCGGGAATTTCAACAATTTATTCATGTTGCGCGTGCGCGAGACGGCCACCGCGGAACTGCTGACGAGGCAGTTGCCGAA
GGTCGAGGTCTATACGACCACCATCGTCTCGGGCGCGACGGACAGCTCAGACATCCGCGGCGCGACGGACTTCACGTCGA
ACACCCAGGACCGCATCAGCATGGCCAGCGTGCCGATGATCGAGCCGTCACACGTCGTCGGTCTGCCCAAGGGCCAATGC
TTCGCGCTGCTGCAGGGCGGCCAGCTTTGGAAGGTGCGCATGCCGCTTCCGGCGCCAGACCCCGATGAAGTGATGCCGAC
GGACTTGCAGCAACTGGCCGGGTATATGCGCCAGAGCTACAGCGAGGCCACGCAGTGGTGGGAGTTCACCAGTTCCGCAG
CCTTGCCGCATGCAGCCTTGCCCGACGACCTGCTGGATGACGCCGCTCCAGCCGAGCCTGACGCGGTGGCCACCGGCGCC
GACGACAGCACCGGCGAGGCCGCACCATGA

Upstream 100 bases:

>100_bases
GTGCCGCTCGCGCCCGTGGCCGGCGACGACCTGGCCGATCGCCTGGGCCTGCGGCACTACCCGGCGCTGATCACGGCCAC
CGGCATCGAGCAATGAAGCC

Downstream 100 bases:

>100_bases
AGGATGCCGCCTCGACCGCGCAGCGGGAGCAGAACCAGCGCCAGGGGCTGATCGTCGGCACCATCACCTTGCCGTTCCGG
CTGCTCGGGGTGCTCATCGG

Product: VirD4, type IV secretory pathway, VirD4 components

Products: NA

Alternate protein names: None

Number of amino acids: Translated: 729; Mature: 728

Protein sequence:

>729_residues
MSGKQPVEVLLRPAVELYTVAACAGAAFLCLVAPWSLALSPAMGIGSALAFGAYGAIRYRDARIILRYRRNIRRLPRYVM
TSKDVPVSQQRLFVGRGFLWEQKHTHRLMQTYRPEFRRYVEPTPAYRLTRRLEERLEFAPLPLSRLPKLTGWDAPFNPVR
PLPPVGGLPRLHGIEPDEVDVSLPLGERVGHSLVLGTTRVGKTRLAELFVTQDIRRRNAAGEHEVVIVIDPKGDADLLKR
MYVEAQRAGREGEFYIFHLGWPEISARYNAVGRFGRISEVATRIAGQLSGEGNSAAFREFAWRFVNIIARALVELGQRPD
YMLIQRHVINIDALFIEYAQHYFAKTEPKAWEVIVQIEAKLNEKNIPRNMIGREKRVVALEQYLSQARNYDPVLDGLRSA
VRYDKTYFDKIVASLLPLLEKLTSGKIAQLLAPNYSDLADPRPIFDWMQVIRKRAVVYVGLDALSDAEVAAAVGNSMFSD
LVSVAGHIYKHGIDDGLPGASAGARVPINVHADEFNELMGDEFIPLINKGGGAGLQVTAYTQTLSDIEARIGNRAKAGQV
IGNFNNLFMLRVRETATAELLTRQLPKVEVYTTTIVSGATDSSDIRGATDFTSNTQDRISMASVPMIEPSHVVGLPKGQC
FALLQGGQLWKVRMPLPAPDPDEVMPTDLQQLAGYMRQSYSEATQWWEFTSSAALPHAALPDDLLDDAAPAEPDAVATGA
DDSTGEAAP

Sequences:

>Translated_729_residues
MSGKQPVEVLLRPAVELYTVAACAGAAFLCLVAPWSLALSPAMGIGSALAFGAYGAIRYRDARIILRYRRNIRRLPRYVM
TSKDVPVSQQRLFVGRGFLWEQKHTHRLMQTYRPEFRRYVEPTPAYRLTRRLEERLEFAPLPLSRLPKLTGWDAPFNPVR
PLPPVGGLPRLHGIEPDEVDVSLPLGERVGHSLVLGTTRVGKTRLAELFVTQDIRRRNAAGEHEVVIVIDPKGDADLLKR
MYVEAQRAGREGEFYIFHLGWPEISARYNAVGRFGRISEVATRIAGQLSGEGNSAAFREFAWRFVNIIARALVELGQRPD
YMLIQRHVINIDALFIEYAQHYFAKTEPKAWEVIVQIEAKLNEKNIPRNMIGREKRVVALEQYLSQARNYDPVLDGLRSA
VRYDKTYFDKIVASLLPLLEKLTSGKIAQLLAPNYSDLADPRPIFDWMQVIRKRAVVYVGLDALSDAEVAAAVGNSMFSD
LVSVAGHIYKHGIDDGLPGASAGARVPINVHADEFNELMGDEFIPLINKGGGAGLQVTAYTQTLSDIEARIGNRAKAGQV
IGNFNNLFMLRVRETATAELLTRQLPKVEVYTTTIVSGATDSSDIRGATDFTSNTQDRISMASVPMIEPSHVVGLPKGQC
FALLQGGQLWKVRMPLPAPDPDEVMPTDLQQLAGYMRQSYSEATQWWEFTSSAALPHAALPDDLLDDAAPAEPDAVATGA
DDSTGEAAP
>Mature_728_residues
SGKQPVEVLLRPAVELYTVAACAGAAFLCLVAPWSLALSPAMGIGSALAFGAYGAIRYRDARIILRYRRNIRRLPRYVMT
SKDVPVSQQRLFVGRGFLWEQKHTHRLMQTYRPEFRRYVEPTPAYRLTRRLEERLEFAPLPLSRLPKLTGWDAPFNPVRP
LPPVGGLPRLHGIEPDEVDVSLPLGERVGHSLVLGTTRVGKTRLAELFVTQDIRRRNAAGEHEVVIVIDPKGDADLLKRM
YVEAQRAGREGEFYIFHLGWPEISARYNAVGRFGRISEVATRIAGQLSGEGNSAAFREFAWRFVNIIARALVELGQRPDY
MLIQRHVINIDALFIEYAQHYFAKTEPKAWEVIVQIEAKLNEKNIPRNMIGREKRVVALEQYLSQARNYDPVLDGLRSAV
RYDKTYFDKIVASLLPLLEKLTSGKIAQLLAPNYSDLADPRPIFDWMQVIRKRAVVYVGLDALSDAEVAAAVGNSMFSDL
VSVAGHIYKHGIDDGLPGASAGARVPINVHADEFNELMGDEFIPLINKGGGAGLQVTAYTQTLSDIEARIGNRAKAGQVI
GNFNNLFMLRVRETATAELLTRQLPKVEVYTTTIVSGATDSSDIRGATDFTSNTQDRISMASVPMIEPSHVVGLPKGQCF
ALLQGGQLWKVRMPLPAPDPDEVMPTDLQQLAGYMRQSYSEATQWWEFTSSAALPHAALPDDLLDDAAPAEPDAVATGAD
DSTGEAAP

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 80779; Mature: 80647

Theoretical pI: Translated: 7.44; Mature: 7.44

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSGKQPVEVLLRPAVELYTVAACAGAAFLCLVAPWSLALSPAMGIGSALAFGAYGAIRYR
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCEEEE
DARIILRYRRNIRRLPRYVMTSKDVPVSQQRLFVGRGFLWEQKHTHRLMQTYRPEFRRYV
CHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHEEECCCCEECHHHHHHHHHHHCHHHHHHC
EPTPAYRLTRRLEERLEFAPLPLSRLPKLTGWDAPFNPVRPLPPVGGLPRLHGIEPDEVD
CCCHHHHHHHHHHHHHCCCCCCHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEE
VSLPLGERVGHSLVLGTTRVGKTRLAELFVTQDIRRRNAAGEHEVVIVIDPKGDADLLKR
EECCCHHHCCCEEEEECCCCCHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCHHHHHH
MYVEAQRAGREGEFYIFHLGWPEISARYNAVGRFGRISEVATRIAGQLSGEGNSAAFREF
HHHHHHHCCCCCCEEEEEECCCHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCHHHHHHH
AWRFVNIIARALVELGQRPDYMLIQRHVINIDALFIEYAQHYFAKTEPKAWEVIVQIEAK
HHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEEEC
LNEKNIPRNMIGREKRVVALEQYLSQARNYDPVLDGLRSAVRYDKTYFDKIVASLLPLLE
CCCCCCCHHHHCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
KLTSGKIAQLLAPNYSDLADPRPIFDWMQVIRKRAVVYVGLDALSDAEVAAAVGNSMFSD
HHCCCCHHHHHCCCCHHCCCCCHHHHHHHHHHHCCEEEEECCCCCCHHHHHHHHHHHHHH
LVSVAGHIYKHGIDDGLPGASAGARVPINVHADEFNELMGDEFIPLINKGGGAGLQVTAY
HHHHHHHHHHHCCCCCCCCCCCCCEEEEEECHHHHHHHHCCCCCHHEECCCCCCEEEEEH
TQTLSDIEARIGNRAKAGQVIGNFNNLFMLRVRETATAELLTRQLPKVEVYTTTIVSGAT
HHHHHHHHHHHCCCCHHCHHHCCCCCEEEEEECHHHHHHHHHHHCCCEEEEEEEEEECCC
DSSDIRGATDFTSNTQDRISMASVPMIEPSHVVGLPKGQCFALLQGGQLWKVRMPLPAPD
CCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCEECCCCCCEEEEEECCCEEEEECCCCCCC
PDEVMPTDLQQLAGYMRQSYSEATQWWEFTSSAALPHAALPDDLLDDAAPAEPDAVATGA
CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHCCCCCCCCCEECCC
DDSTGEAAP
CCCCCCCCC
>Mature Secondary Structure 
SGKQPVEVLLRPAVELYTVAACAGAAFLCLVAPWSLALSPAMGIGSALAFGAYGAIRYR
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCEEEE
DARIILRYRRNIRRLPRYVMTSKDVPVSQQRLFVGRGFLWEQKHTHRLMQTYRPEFRRYV
CHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHEEECCCCEECHHHHHHHHHHHCHHHHHHC
EPTPAYRLTRRLEERLEFAPLPLSRLPKLTGWDAPFNPVRPLPPVGGLPRLHGIEPDEVD
CCCHHHHHHHHHHHHHCCCCCCHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEE
VSLPLGERVGHSLVLGTTRVGKTRLAELFVTQDIRRRNAAGEHEVVIVIDPKGDADLLKR
EECCCHHHCCCEEEEECCCCCHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCHHHHHH
MYVEAQRAGREGEFYIFHLGWPEISARYNAVGRFGRISEVATRIAGQLSGEGNSAAFREF
HHHHHHHCCCCCCEEEEEECCCHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCHHHHHHH
AWRFVNIIARALVELGQRPDYMLIQRHVINIDALFIEYAQHYFAKTEPKAWEVIVQIEAK
HHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEEEC
LNEKNIPRNMIGREKRVVALEQYLSQARNYDPVLDGLRSAVRYDKTYFDKIVASLLPLLE
CCCCCCCHHHHCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
KLTSGKIAQLLAPNYSDLADPRPIFDWMQVIRKRAVVYVGLDALSDAEVAAAVGNSMFSD
HHCCCCHHHHHCCCCHHCCCCCHHHHHHHHHHHCCEEEEECCCCCCHHHHHHHHHHHHHH
LVSVAGHIYKHGIDDGLPGASAGARVPINVHADEFNELMGDEFIPLINKGGGAGLQVTAY
HHHHHHHHHHHCCCCCCCCCCCCCEEEEEECHHHHHHHHCCCCCHHEECCCCCCEEEEEH
TQTLSDIEARIGNRAKAGQVIGNFNNLFMLRVRETATAELLTRQLPKVEVYTTTIVSGAT
HHHHHHHHHHHCCCCHHCHHHCCCCCEEEEEECHHHHHHHHHHHCCCEEEEEEEEEECCC
DSSDIRGATDFTSNTQDRISMASVPMIEPSHVVGLPKGQCFALLQGGQLWKVRMPLPAPD
CCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCEECCCCCCEEEEEECCCEEEEECCCCCCC
PDEVMPTDLQQLAGYMRQSYSEATQWWEFTSSAALPHAALPDDLLDDAAPAEPDAVATGA
CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHCCCCCCCCCEECCC
DDSTGEAAP
CCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA